Wall clock time and date at job start Mon Mar 30 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47051 * 2 1 4 4 H 1.09000 * 109.47076 * 180.34107 * 3 2 1 5 5 C 1.50697 * 109.47288 * 300.34325 * 3 2 1 6 6 H 1.08003 * 120.00155 * 120.00259 * 5 3 2 7 7 C 1.37883 * 119.99598 * 299.99891 * 5 3 2 8 8 N 1.31511 * 120.00350 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99623 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46761 * 120.00316 * 9 7 5 12 12 H 1.48500 * 109.47266 * 240.00153 * 9 7 5 13 13 N 1.46905 * 109.47230 * 60.34434 * 3 2 1 14 14 C 1.48556 * 111.00232 * 50.06697 * 13 3 2 15 15 C 1.54376 * 104.70231 * 159.10063 * 14 13 3 16 16 C 1.54268 * 105.05880 * 336.08774 * 15 14 13 17 17 C 1.48854 * 111.13214 * 165.38861 * 13 3 2 18 18 H 1.08998 * 110.39752 * 319.79352 * 17 13 3 19 19 C 1.52997 * 110.49317 * 82.16594 * 17 13 3 20 20 C 1.53001 * 117.49797 * 245.46315 * 19 17 13 21 21 C 1.53004 * 117.50145 * 176.80525 * 19 17 13 22 22 H 1.09001 * 109.47121 * 185.49725 * 1 2 3 23 23 H 1.08992 * 109.47341 * 305.50059 * 1 2 3 24 24 H 1.08998 * 109.47171 * 65.50461 * 1 2 3 25 25 H 1.09002 * 109.47551 * 239.99586 * 2 1 3 26 26 H 1.09006 * 109.47049 * 119.99983 * 2 1 3 27 27 H 0.96994 * 120.00057 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41202 * 40.25852 * 14 13 3 29 29 H 1.09004 * 110.40967 * 277.94234 * 14 13 3 30 30 H 1.09004 * 110.32270 * 94.97673 * 15 14 13 31 31 H 1.08993 * 110.32835 * 217.19461 * 15 14 13 32 32 H 1.09005 * 110.32127 * 118.89246 * 16 15 14 33 33 H 1.08994 * 110.32653 * 241.00148 * 16 15 14 34 34 H 1.08999 * 115.55213 * 31.12740 * 19 17 13 35 35 H 1.09000 * 117.49789 * 0.02562 * 20 19 17 36 36 H 1.09003 * 117.50114 * 145.01741 * 20 19 17 37 37 H 1.09001 * 117.50226 * 214.97999 * 21 19 17 38 38 H 1.09006 * 117.49501 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1299 1.4425 -0.0061 5 6 1.5307 2.1553 -1.2261 6 1 0.9104 3.0333 -1.1218 7 6 1.8568 1.6867 -2.4812 8 7 2.6126 0.6180 -2.6083 9 14 1.2250 2.5700 -4.0011 10 1 0.4024 3.7359 -3.5900 11 1 2.3752 3.0386 -4.8152 12 1 0.3956 1.6378 -4.8065 13 7 1.5571 2.1326 1.2036 14 6 1.8352 1.3323 2.4239 15 6 1.7891 2.3533 3.5809 16 6 2.0941 3.7160 2.9253 17 6 2.2988 3.4036 1.4274 18 1 3.3580 3.2689 1.2084 19 6 1.7148 4.5237 0.5641 20 6 2.6054 5.1055 -0.5355 21 6 2.3114 5.9235 0.7245 22 1 -0.3633 -1.0229 0.0984 23 1 -0.3633 0.5967 0.8366 24 1 -0.3633 0.4261 -0.9351 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.8417 0.2882 -3.4912 28 1 2.8218 0.8734 2.3609 29 1 1.0696 0.5684 2.5602 30 1 0.7987 2.3654 4.0359 31 1 2.5467 2.1142 4.3272 32 1 1.2534 4.3969 3.0587 33 1 3.0004 4.1466 3.3511 34 1 0.6462 4.4523 0.3611 35 1 3.6072 4.6900 -0.6442 36 1 2.1227 5.4172 -1.4618 37 1 1.6355 6.7730 0.6267 38 1 3.1198 6.0464 1.4454 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706661388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:10 Heat of formation + Delta-G solvation = 8.532900 kcal Electronic energy + Delta-G solvation = -16587.999632 eV Core-core repulsion = 14237.256491 eV Total energy + Delta-G solvation = -2350.743141 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36352 -37.37421 -35.94213 -33.36250 -31.14891 -29.43951 -27.90993 -25.27127 -23.41711 -23.13090 -22.24245 -20.51099 -20.47152 -18.16719 -17.05970 -16.68517 -16.07254 -15.70096 -15.13789 -14.99459 -14.38591 -14.05442 -13.89426 -13.30169 -13.23282 -12.98381 -12.85982 -12.44288 -12.33146 -12.26478 -12.00692 -11.93026 -11.62466 -11.55021 -11.35960 -11.19689 -11.00140 -10.72950 -10.50324 -10.28503 -9.01089 -8.00441 -6.04881 1.38505 1.42179 1.51658 2.46779 3.06818 3.28955 3.45817 3.92610 3.96882 4.19120 4.27360 4.34009 4.41827 4.55201 4.61246 4.73545 4.73756 4.86435 4.88310 4.89391 5.02439 5.07976 5.11770 5.22362 5.24006 5.30234 5.37412 5.41089 5.45389 5.51609 5.59948 5.78748 5.83039 5.90724 6.38201 6.47869 6.74625 7.06297 7.60508 9.06512 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.013039 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.151341 B = 2146.941765 C = 3049.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C 0.216 3.784 4 H -0.049 1.049 5 C -0.468 4.468 6 H 0.065 0.935 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.938 3.062 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.501 5.501 14 C 0.026 3.974 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.100 3.900 18 H 0.014 0.986 19 C -0.116 4.116 20 C -0.182 4.182 21 C -0.158 4.158 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.254 0.746 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 6.209 9.987 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C 0.109 3.891 4 H -0.031 1.031 5 C -0.507 4.507 6 H 0.083 0.917 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.766 3.234 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.225 5.225 14 C -0.102 4.102 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.008 4.008 18 H 0.032 0.968 19 C -0.135 4.135 20 C -0.219 4.219 21 C -0.196 4.196 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.194 6.185 9.758 11.760 hybrid contribution 1.013 -0.301 -1.496 1.832 sum -1.180 5.884 8.262 10.212 Atomic orbital electron populations 1.21326 0.95612 0.98637 1.00903 1.21492 0.96563 0.97750 0.99151 1.19183 0.89996 0.91613 0.88323 1.03145 1.21292 1.28890 1.10828 0.89690 0.91702 1.25519 0.96074 0.95859 1.01233 1.70024 1.39337 1.24693 1.22961 0.85786 0.77974 0.79008 0.80635 1.18946 1.21475 1.21323 1.65436 1.52056 1.03319 1.01712 1.23093 0.98382 0.97227 0.91476 1.22284 1.02747 0.93770 0.96469 1.22286 1.02315 0.97704 0.92361 1.22080 0.93379 0.90314 0.95060 0.96792 1.21857 0.98022 0.93098 1.00484 1.22722 1.00308 1.05278 0.93568 1.23083 1.03383 0.93901 0.99205 0.94417 0.92645 0.94884 0.92234 0.95569 0.93647 0.96522 0.90646 0.90118 0.90228 0.90173 0.90541 0.89151 0.91187 0.90385 0.87485 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.32 71.98 0.67 -4.02 16 2 C -0.11 -5.40 4.99 30.59 0.15 -5.24 16 3 C 0.22 10.92 1.64 44.17 0.07 10.99 16 4 H -0.05 -2.86 7.78 -2.39 -0.02 -2.88 16 5 C -0.47 -25.01 6.17 25.60 0.16 -24.85 16 6 H 0.06 3.47 5.65 -2.91 -0.02 3.45 16 7 C 0.01 0.54 5.30 84.66 0.45 0.99 16 8 N -0.93 -54.28 11.32 21.45 0.24 -54.03 16 9 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 N -0.50 -20.97 4.16 -835.34 -3.47 -24.44 16 14 C 0.03 0.94 4.81 86.45 0.42 1.35 16 15 C -0.11 -3.07 7.00 31.49 0.22 -2.85 16 16 C -0.11 -3.03 6.29 31.49 0.20 -2.83 16 17 C 0.10 3.75 2.45 45.00 0.11 3.86 16 18 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 19 C -0.12 -4.21 3.32 -10.79 -0.04 -4.24 16 20 C -0.18 -6.67 9.42 30.62 0.29 -6.39 16 21 C -0.16 -4.48 9.97 30.62 0.31 -4.18 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 2.28 6.81 -2.39 -0.02 2.27 16 24 H 0.03 1.56 7.41 -2.39 -0.02 1.55 16 25 H 0.06 3.29 6.08 -2.39 -0.01 3.28 16 26 H 0.03 1.16 6.67 -2.38 -0.02 1.15 16 27 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.02 0.63 7.85 -2.39 -0.02 0.61 16 29 H 0.08 2.59 7.06 -2.38 -0.02 2.57 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.07 7.86 -2.38 -0.02 2.05 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.09 3.56 7.59 -2.39 -0.02 3.55 16 35 H 0.07 2.79 8.07 -2.39 -0.02 2.77 16 36 H 0.08 2.92 8.14 -2.39 -0.02 2.91 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -59.91 288.73 2.81 -57.10 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.01 Total: 12.24 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.01 Total: -37.40 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.23 Total: -78.47 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -59.91 2.81 -57.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706661388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.637 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds