Wall clock time and date at job start Mon Mar 30 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47197 * 2 1 4 4 H 1.09005 * 109.47054 * 55.00300 * 3 2 1 5 5 C 1.50699 * 109.47303 * 175.00287 * 3 2 1 6 6 H 1.07993 * 119.99988 * 119.99958 * 5 3 2 7 7 C 1.37884 * 119.99699 * 300.27604 * 5 3 2 8 8 N 1.31510 * 119.99759 * 179.72350 * 7 5 3 9 9 Si 1.86798 * 120.00051 * 359.72644 * 7 5 3 10 10 H 1.48501 * 109.47177 * 89.99746 * 9 7 5 11 11 H 1.48500 * 109.47240 * 210.00114 * 9 7 5 12 12 H 1.48506 * 109.46913 * 329.99590 * 9 7 5 13 13 N 1.46899 * 109.47535 * 295.00405 * 3 2 1 14 14 C 1.48564 * 110.99920 * 290.42172 * 13 3 2 15 15 C 1.54382 * 104.59417 * 200.96086 * 14 13 3 16 16 C 1.54262 * 105.06100 * 23.84363 * 15 14 13 17 17 C 1.48552 * 111.00517 * 174.99760 * 13 3 2 18 18 H 1.09001 * 110.41081 * 40.14228 * 17 13 3 19 19 C 1.53001 * 110.41233 * 277.81980 * 17 13 3 20 20 C 1.53000 * 117.50072 * 6.66634 * 19 17 13 21 21 C 1.52993 * 117.49703 * 298.04183 * 19 17 13 22 22 H 1.09000 * 109.46631 * 299.99589 * 1 2 3 23 23 H 1.08997 * 109.47102 * 59.99640 * 1 2 3 24 24 H 1.09002 * 109.46790 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46631 * 240.00411 * 2 1 3 26 26 H 1.08997 * 109.47102 * 120.00360 * 2 1 3 27 27 H 0.96999 * 119.99944 * 179.97438 * 8 7 5 28 28 H 1.09007 * 110.40638 * 319.73422 * 14 13 3 29 29 H 1.08991 * 110.41641 * 82.17653 * 14 13 3 30 30 H 1.09004 * 110.32031 * 264.95172 * 15 14 13 31 31 H 1.08991 * 110.32583 * 142.74527 * 15 14 13 32 32 H 1.08996 * 110.32594 * 241.10833 * 16 15 14 33 33 H 1.09004 * 110.40642 * 118.94243 * 16 15 14 34 34 H 1.09009 * 115.54819 * 152.37446 * 19 17 13 35 35 H 1.08998 * 117.49353 * 359.97438 * 20 19 17 36 36 H 1.08997 * 117.50117 * 145.01906 * 20 19 17 37 37 H 1.09006 * 117.49819 * 214.97623 * 21 19 17 38 38 H 1.09000 * 117.50285 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1436 0.8733 1.2252 8 7 5.4544 0.8700 1.3306 9 14 3.0967 0.1042 2.5676 10 1 2.8697 -1.3302 2.2577 11 1 3.7972 0.2242 3.8715 12 1 1.7908 0.8075 2.6408 13 7 1.6514 2.0993 -1.2551 14 6 2.4048 1.5373 -2.4057 15 6 2.3184 2.6263 -3.4965 16 6 2.0684 3.9419 -2.7307 17 6 2.0249 3.5371 -1.2416 18 1 3.0035 3.6713 -0.7806 19 6 0.9686 4.3558 -0.4967 20 6 -0.1487 3.5887 0.2133 21 6 -0.4500 4.3666 -1.0693 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.8777 0.4687 2.1056 28 1 3.4437 1.3583 -2.1287 29 1 1.9383 0.6150 -2.7515 30 1 1.4896 2.4190 -4.1735 31 1 3.2555 2.6827 -4.0502 32 1 1.1170 4.3803 -3.0318 33 1 2.8819 4.6454 -2.9082 34 1 1.3286 5.2711 -0.0266 35 1 -0.1314 2.5007 0.1493 36 1 -0.5239 3.9990 1.1507 37 1 -1.0237 5.2887 -0.9756 38 1 -0.6308 3.7907 -1.9770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706661390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:13 Heat of formation + Delta-G solvation = 32.104865 kcal Electronic energy + Delta-G solvation = -16772.255350 eV Core-core repulsion = 14422.534367 eV Total energy + Delta-G solvation = -2349.720984 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17928 -35.66013 -34.23636 -31.96414 -29.83677 -27.99313 -26.58681 -23.07181 -22.28614 -22.10487 -20.45487 -19.35323 -18.44242 -16.85843 -15.66707 -15.40393 -14.51325 -14.18126 -13.58359 -13.07791 -12.72405 -12.71114 -12.37945 -12.09866 -11.83665 -11.51916 -11.07284 -10.95839 -10.75185 -10.71347 -10.51933 -10.30736 -10.05201 -9.95501 -9.76952 -9.54987 -9.43964 -9.23434 -9.10670 -8.54434 -7.22633 -6.11159 -4.10847 3.26164 3.37477 3.39643 4.36976 4.38330 4.98608 5.20103 5.26077 5.39413 5.57056 5.59390 5.66041 5.73452 5.99079 6.00366 6.05709 6.13225 6.22509 6.25328 6.28347 6.42954 6.45801 6.59282 6.63898 6.65594 6.67909 6.80667 6.86351 6.94348 6.96489 6.99570 7.13258 7.27754 7.59321 8.02846 8.13950 8.45489 8.90823 9.52644 11.01293 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.011989 C = 0.010777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.539153 B = 2334.894562 C = 2597.420204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.166 3.834 4 H 0.046 0.954 5 C -0.543 4.543 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.263 1.263 13 N -0.495 5.495 14 C 0.030 3.970 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.091 3.909 18 H 0.073 0.927 19 C -0.135 4.135 20 C -0.177 4.177 21 C -0.177 4.177 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 3.703 -5.171 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.058 3.942 4 H 0.064 0.936 5 C -0.581 4.581 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.188 1.188 13 N -0.218 5.218 14 C -0.098 4.098 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.018 4.018 18 H 0.091 0.909 19 C -0.154 4.154 20 C -0.214 4.214 21 C -0.214 4.214 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.656 3.567 -5.107 11.491 hybrid contribution 0.576 -0.427 1.027 1.253 sum -9.079 3.140 -4.079 10.437 Atomic orbital electron populations 1.21793 0.97571 0.99431 1.01539 1.21876 0.93863 0.99450 1.00529 1.19892 0.94632 0.90550 0.89131 0.93605 1.21619 0.90705 1.38707 1.07099 0.90259 1.24970 0.94682 0.95360 0.97823 1.69913 1.08810 1.45084 1.29835 0.86870 0.80800 0.79794 0.80877 1.20632 1.22719 1.18813 1.65517 1.51177 1.01140 1.04000 1.23066 0.99650 0.96357 0.90736 1.22285 1.00335 0.95678 0.97901 1.22319 1.00954 0.96954 0.95210 1.22011 0.96753 0.89368 0.93646 0.90947 1.22166 0.89635 1.00224 1.03382 1.23153 1.02277 1.01462 0.94466 1.22791 0.98751 1.01442 0.98446 0.93882 0.91857 0.94766 0.92498 0.93648 0.92717 0.91094 0.91918 0.92435 0.92485 0.91669 0.92503 0.88902 0.86214 0.90666 0.90476 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.68 37.16 0.32 -2.33 16 2 C -0.12 -2.57 4.90 -26.73 -0.13 -2.70 16 3 C 0.17 3.77 0.59 -68.87 -0.04 3.73 16 4 H 0.05 1.11 5.36 -51.93 -0.28 0.83 16 5 C -0.54 -14.55 7.14 -34.44 -0.25 -14.80 16 6 H 0.08 2.31 5.90 -52.49 -0.31 2.00 16 7 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.89 21.90 24.41 -169.99 -4.15 17.75 16 10 H -0.28 -6.78 6.82 56.52 0.39 -6.39 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 13 N -0.49 -9.76 3.44 -215.62 -0.74 -10.50 16 14 C 0.03 0.57 5.47 -2.18 -0.01 0.56 16 15 C -0.12 -1.97 7.00 -25.35 -0.18 -2.15 16 16 C -0.12 -1.85 6.44 -25.35 -0.16 -2.02 16 17 C 0.09 1.71 2.54 -66.08 -0.17 1.54 16 18 H 0.07 1.60 6.63 -51.93 -0.34 1.26 16 19 C -0.14 -2.30 5.87 -90.62 -0.53 -2.83 16 20 C -0.18 -2.97 8.80 -26.73 -0.24 -3.21 16 21 C -0.18 -2.64 9.27 -26.73 -0.25 -2.88 16 22 H 0.04 0.77 7.62 -51.93 -0.40 0.37 16 23 H 0.06 1.11 7.57 -51.93 -0.39 0.71 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.22 7.04 -51.93 -0.37 0.85 16 26 H 0.05 1.05 3.19 -51.93 -0.17 0.88 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.07 1.58 5.53 -51.93 -0.29 1.29 16 29 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.96 6.53 -51.93 -0.34 0.62 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 35 H 0.12 2.20 3.72 -51.93 -0.19 2.01 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.42 7.56 -51.93 -0.39 1.03 16 LS Contribution 274.02 15.07 4.13 4.13 Total: -1.00 -28.03 274.02 -7.72 -35.75 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.00 Total: 4.22 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.73 Total: -25.08 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.03 Total: -36.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.03 -7.72 -35.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706661390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.853 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds