Wall clock time and date at job start Mon Mar 30 2020 02:38:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52995 * 109.47197 * 2 1
4 4 H 1.09005 * 109.47054 * 55.00300 * 3 2 1
5 5 C 1.50699 * 109.47303 * 175.00287 * 3 2 1
6 6 H 1.07993 * 119.99988 * 119.99958 * 5 3 2
7 7 C 1.37884 * 119.99699 * 300.27604 * 5 3 2
8 8 N 1.31510 * 119.99759 * 179.72350 * 7 5 3
9 9 Si 1.86798 * 120.00051 * 359.72644 * 7 5 3
10 10 H 1.48501 * 109.47177 * 89.99746 * 9 7 5
11 11 H 1.48500 * 109.47240 * 210.00114 * 9 7 5
12 12 H 1.48506 * 109.46913 * 329.99590 * 9 7 5
13 13 N 1.46899 * 109.47535 * 295.00405 * 3 2 1
14 14 C 1.48564 * 110.99920 * 290.42172 * 13 3 2
15 15 C 1.54382 * 104.59417 * 200.96086 * 14 13 3
16 16 C 1.54262 * 105.06100 * 23.84363 * 15 14 13
17 17 C 1.48552 * 111.00517 * 174.99760 * 13 3 2
18 18 H 1.09001 * 110.41081 * 40.14228 * 17 13 3
19 19 C 1.53001 * 110.41233 * 277.81980 * 17 13 3
20 20 C 1.53000 * 117.50072 * 6.66634 * 19 17 13
21 21 C 1.52993 * 117.49703 * 298.04183 * 19 17 13
22 22 H 1.09000 * 109.46631 * 299.99589 * 1 2 3
23 23 H 1.08997 * 109.47102 * 59.99640 * 1 2 3
24 24 H 1.09002 * 109.46790 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.46631 * 240.00411 * 2 1 3
26 26 H 1.08997 * 109.47102 * 120.00360 * 2 1 3
27 27 H 0.96999 * 119.99944 * 179.97438 * 8 7 5
28 28 H 1.09007 * 110.40638 * 319.73422 * 14 13 3
29 29 H 1.08991 * 110.41641 * 82.17653 * 14 13 3
30 30 H 1.09004 * 110.32031 * 264.95172 * 15 14 13
31 31 H 1.08991 * 110.32583 * 142.74527 * 15 14 13
32 32 H 1.08996 * 110.32594 * 241.10833 * 16 15 14
33 33 H 1.09004 * 110.40642 * 118.94243 * 16 15 14
34 34 H 1.09009 * 115.54819 * 152.37446 * 19 17 13
35 35 H 1.08998 * 117.49353 * 359.97438 * 20 19 17
36 36 H 1.08997 * 117.50117 * 145.01906 * 20 19 17
37 37 H 1.09006 * 117.49819 * 214.97623 * 21 19 17
38 38 H 1.09000 * 117.50285 * 359.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 0.8419
5 6 3.5420 1.4443 0.1238
6 1 4.1472 1.8888 -0.6524
7 6 4.1436 0.8733 1.2252
8 7 5.4544 0.8700 1.3306
9 14 3.0967 0.1042 2.5676
10 1 2.8697 -1.3302 2.2577
11 1 3.7972 0.2242 3.8715
12 1 1.7908 0.8075 2.6408
13 7 1.6514 2.0993 -1.2551
14 6 2.4048 1.5373 -2.4057
15 6 2.3184 2.6263 -3.4965
16 6 2.0684 3.9419 -2.7307
17 6 2.0249 3.5371 -1.2416
18 1 3.0035 3.6713 -0.7806
19 6 0.9686 4.3558 -0.4967
20 6 -0.1487 3.5887 0.2133
21 6 -0.4500 4.3666 -1.0693
22 1 -0.3632 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5139 0.8899
27 1 5.8777 0.4687 2.1056
28 1 3.4437 1.3583 -2.1287
29 1 1.9383 0.6150 -2.7515
30 1 1.4896 2.4190 -4.1735
31 1 3.2555 2.6827 -4.0502
32 1 1.1170 4.3803 -3.0318
33 1 2.8819 4.6454 -2.9082
34 1 1.3286 5.2711 -0.0266
35 1 -0.1314 2.5007 0.1493
36 1 -0.5239 3.9990 1.1507
37 1 -1.0237 5.2887 -0.9756
38 1 -0.6308 3.7907 -1.9770
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000706661390.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:13
Heat of formation + Delta-G solvation = 32.104865 kcal
Electronic energy + Delta-G solvation = -16772.255350 eV
Core-core repulsion = 14422.534367 eV
Total energy + Delta-G solvation = -2349.720984 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.17928 -35.66013 -34.23636 -31.96414 -29.83677 -27.99313 -26.58681 -23.07181
-22.28614 -22.10487 -20.45487 -19.35323 -18.44242 -16.85843 -15.66707 -15.40393
-14.51325 -14.18126 -13.58359 -13.07791 -12.72405 -12.71114 -12.37945 -12.09866
-11.83665 -11.51916 -11.07284 -10.95839 -10.75185 -10.71347 -10.51933 -10.30736
-10.05201 -9.95501 -9.76952 -9.54987 -9.43964 -9.23434 -9.10670 -8.54434
-7.22633 -6.11159 -4.10847 3.26164 3.37477 3.39643 4.36976 4.38330
4.98608 5.20103 5.26077 5.39413 5.57056 5.59390 5.66041 5.73452
5.99079 6.00366 6.05709 6.13225 6.22509 6.25328 6.28347 6.42954
6.45801 6.59282 6.63898 6.65594 6.67909 6.80667 6.86351 6.94348
6.96489 6.99570 7.13258 7.27754 7.59321 8.02846 8.13950 8.45489
8.90823 9.52644 11.01293
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.026100 B = 0.011989 C = 0.010777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1072.539153 B = 2334.894562 C = 2597.420204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.119 4.119
3 C 0.166 3.834
4 H 0.046 0.954
5 C -0.543 4.543
6 H 0.080 0.920
7 C 0.074 3.926
8 N -0.899 5.899
9 Si 0.886 3.114
10 H -0.279 1.279
11 H -0.299 1.299
12 H -0.263 1.263
13 N -0.495 5.495
14 C 0.030 3.970
15 C -0.124 4.124
16 C -0.116 4.116
17 C 0.091 3.909
18 H 0.073 0.927
19 C -0.135 4.135
20 C -0.177 4.177
21 C -0.177 4.177
22 H 0.042 0.958
23 H 0.062 0.938
24 H 0.033 0.967
25 H 0.056 0.944
26 H 0.045 0.955
27 H 0.263 0.737
28 H 0.071 0.929
29 H 0.062 0.938
30 H 0.057 0.943
31 H 0.056 0.944
32 H 0.065 0.935
33 H 0.056 0.944
34 H 0.093 0.907
35 H 0.120 0.880
36 H 0.075 0.925
37 H 0.077 0.923
38 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.227 3.703 -5.171 11.207
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.157 4.157
3 C 0.058 3.942
4 H 0.064 0.936
5 C -0.581 4.581
6 H 0.097 0.903
7 C -0.128 4.128
8 N -0.536 5.536
9 Si 0.717 3.283
10 H -0.206 1.206
11 H -0.227 1.227
12 H -0.188 1.188
13 N -0.218 5.218
14 C -0.098 4.098
15 C -0.162 4.162
16 C -0.154 4.154
17 C -0.018 4.018
18 H 0.091 0.909
19 C -0.154 4.154
20 C -0.214 4.214
21 C -0.214 4.214
22 H 0.061 0.939
23 H 0.081 0.919
24 H 0.052 0.948
25 H 0.075 0.925
26 H 0.064 0.936
27 H 0.073 0.927
28 H 0.089 0.911
29 H 0.081 0.919
30 H 0.076 0.924
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.075 0.925
34 H 0.111 0.889
35 H 0.138 0.862
36 H 0.093 0.907
37 H 0.095 0.905
38 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -9.656 3.567 -5.107 11.491
hybrid contribution 0.576 -0.427 1.027 1.253
sum -9.079 3.140 -4.079 10.437
Atomic orbital electron populations
1.21793 0.97571 0.99431 1.01539 1.21876 0.93863 0.99450 1.00529
1.19892 0.94632 0.90550 0.89131 0.93605 1.21619 0.90705 1.38707
1.07099 0.90259 1.24970 0.94682 0.95360 0.97823 1.69913 1.08810
1.45084 1.29835 0.86870 0.80800 0.79794 0.80877 1.20632 1.22719
1.18813 1.65517 1.51177 1.01140 1.04000 1.23066 0.99650 0.96357
0.90736 1.22285 1.00335 0.95678 0.97901 1.22319 1.00954 0.96954
0.95210 1.22011 0.96753 0.89368 0.93646 0.90947 1.22166 0.89635
1.00224 1.03382 1.23153 1.02277 1.01462 0.94466 1.22791 0.98751
1.01442 0.98446 0.93882 0.91857 0.94766 0.92498 0.93648 0.92717
0.91094 0.91918 0.92435 0.92485 0.91669 0.92503 0.88902 0.86214
0.90666 0.90476 0.88839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.65 8.68 37.16 0.32 -2.33 16
2 C -0.12 -2.57 4.90 -26.73 -0.13 -2.70 16
3 C 0.17 3.77 0.59 -68.87 -0.04 3.73 16
4 H 0.05 1.11 5.36 -51.93 -0.28 0.83 16
5 C -0.54 -14.55 7.14 -34.44 -0.25 -14.80 16
6 H 0.08 2.31 5.90 -52.49 -0.31 2.00 16
7 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16
8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16
9 Si 0.89 21.90 24.41 -169.99 -4.15 17.75 16
10 H -0.28 -6.78 6.82 56.52 0.39 -6.39 16
11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16
12 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16
13 N -0.49 -9.76 3.44 -215.62 -0.74 -10.50 16
14 C 0.03 0.57 5.47 -2.18 -0.01 0.56 16
15 C -0.12 -1.97 7.00 -25.35 -0.18 -2.15 16
16 C -0.12 -1.85 6.44 -25.35 -0.16 -2.02 16
17 C 0.09 1.71 2.54 -66.08 -0.17 1.54 16
18 H 0.07 1.60 6.63 -51.93 -0.34 1.26 16
19 C -0.14 -2.30 5.87 -90.62 -0.53 -2.83 16
20 C -0.18 -2.97 8.80 -26.73 -0.24 -3.21 16
21 C -0.18 -2.64 9.27 -26.73 -0.25 -2.88 16
22 H 0.04 0.77 7.62 -51.93 -0.40 0.37 16
23 H 0.06 1.11 7.57 -51.93 -0.39 0.71 16
24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
25 H 0.06 1.22 7.04 -51.93 -0.37 0.85 16
26 H 0.05 1.05 3.19 -51.93 -0.17 0.88 16
27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
28 H 0.07 1.58 5.53 -51.93 -0.29 1.29 16
29 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16
30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
32 H 0.06 0.96 6.53 -51.93 -0.34 0.62 16
33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16
35 H 0.12 2.20 3.72 -51.93 -0.19 2.01 16
36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.09 1.42 7.56 -51.93 -0.39 1.03 16
LS Contribution 274.02 15.07 4.13 4.13
Total: -1.00 -28.03 274.02 -7.72 -35.75
By element:
Atomic # 1 Polarization: 10.22 SS G_CDS: -6.00 Total: 4.22 kcal
Atomic # 6 Polarization: -23.35 SS G_CDS: -1.73 Total: -25.08 kcal
Atomic # 7 Polarization: -36.80 SS G_CDS: 0.03 Total: -36.77 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -28.03 -7.72 -35.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706661390.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.853 kcal
(2) G-P(sol) polarization free energy of solvation -28.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds