Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47353 * 2 1 4 4 C 1.53007 * 109.46662 * 240.00530 * 2 1 3 5 5 C 1.52996 * 109.46925 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47480 * 59.99804 * 5 4 2 7 7 C 1.53003 * 109.46952 * 300.00265 * 6 5 4 8 8 H 1.09000 * 109.46733 * 299.99522 * 7 6 5 9 9 N 1.46498 * 109.46848 * 179.97438 * 7 6 5 10 10 C 1.36942 * 119.99981 * 299.99439 * 9 7 6 11 11 H 1.08001 * 119.99587 * 307.94542 * 10 9 7 12 12 C 1.38817 * 119.99688 * 127.94717 * 10 9 7 13 13 N 1.31610 * 119.99994 * 345.53630 * 12 10 9 14 14 Si 1.86800 * 119.99439 * 165.53995 * 12 10 9 15 15 H 1.48491 * 109.47505 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46824 * 120.00181 * 14 12 10 17 17 H 1.48503 * 109.46889 * 239.99254 * 14 12 10 18 18 C 1.46502 * 120.00221 * 120.00252 * 9 7 6 19 19 C 1.52995 * 117.50289 * 181.99914 * 18 9 7 20 20 C 1.52998 * 117.50114 * 113.37195 * 18 9 7 21 21 C 1.52994 * 109.47541 * 120.00546 * 2 1 3 22 22 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46403 * 299.99249 * 1 2 3 24 24 H 1.08994 * 109.47635 * 59.99329 * 1 2 3 25 25 H 1.09000 * 109.46803 * 299.99807 * 4 2 1 26 26 H 1.08994 * 109.46980 * 59.99739 * 4 2 1 27 27 H 1.09000 * 109.46955 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47311 * 299.99605 * 5 4 2 29 29 H 1.08997 * 109.47295 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47011 * 59.99617 * 6 5 4 31 31 H 0.97003 * 120.00116 * 176.54507 * 13 12 10 32 32 H 1.09000 * 115.54640 * 327.70259 * 18 9 7 33 33 H 1.09003 * 117.49383 * 359.97438 * 19 18 9 34 34 H 1.08997 * 117.50022 * 145.01303 * 19 18 9 35 35 H 1.09003 * 117.49773 * 214.97533 * 20 18 9 36 36 H 1.08988 * 117.50091 * 0.02562 * 20 18 9 37 37 H 1.09000 * 109.47089 * 299.99906 * 21 2 1 38 38 H 1.09000 * 109.47243 * 59.99386 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2498 6 6 4.0806 -1.4416 -0.0006 7 6 3.5706 -0.7204 1.2487 8 1 3.9336 0.3073 1.2485 9 7 4.0590 -1.4111 2.4448 10 6 3.7282 -2.7222 2.6614 11 1 2.6939 -3.0310 2.6261 12 6 4.7223 -3.6541 2.9265 13 7 5.9828 -3.3560 2.6935 14 14 4.2707 -5.3314 3.6138 15 1 2.7981 -5.4160 3.7852 16 1 4.7218 -6.3892 2.6742 17 1 4.9335 -5.5222 4.9290 18 6 4.9013 -0.6992 3.4092 19 6 5.4181 -1.4884 4.6137 20 6 4.3189 -0.4406 4.8001 21 6 2.0401 -0.7213 1.2491 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 1.6766 -1.7488 -1.2494 26 1 1.6765 -0.2073 -2.1392 27 1 3.9332 -1.2348 -2.1396 28 1 3.9329 0.3071 -1.2500 29 1 5.1705 -1.4416 -0.0012 30 1 3.7175 -2.4694 -0.0004 31 1 6.6815 -3.9878 2.9253 32 1 5.5565 0.0634 2.9881 33 1 5.1310 -2.5373 4.6888 34 1 6.4135 -1.2453 4.9852 35 1 4.5913 0.4920 5.2944 36 1 3.3093 -0.8004 4.9979 37 1 1.6768 -0.2076 2.1391 38 1 1.6767 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706766229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 22.094722 kcal Electronic energy + Delta-G solvation = -16403.729320 eV Core-core repulsion = 14053.574264 eV Total energy + Delta-G solvation = -2350.155056 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.36582 -36.37346 -32.83017 -31.79971 -31.05371 -27.72817 -25.77793 -24.37344 -21.49137 -20.98791 -20.50626 -19.55850 -18.95424 -16.19477 -15.18793 -14.49435 -14.41778 -13.97052 -13.70334 -13.24918 -13.09087 -12.71896 -12.12710 -11.84216 -11.44912 -11.37257 -11.16203 -11.03653 -10.85587 -10.57672 -10.35364 -10.23344 -10.13300 -10.05821 -9.74867 -9.53495 -9.27190 -9.10523 -8.77224 -8.12625 -6.26694 -5.65459 -3.50116 3.32904 3.42806 3.45409 4.45530 5.11156 5.21846 5.26742 5.37249 5.52058 5.57658 5.73841 5.85521 6.03353 6.10047 6.15643 6.21532 6.27137 6.31916 6.36720 6.42086 6.49930 6.52220 6.62230 6.64218 6.74628 6.78018 6.81762 7.05064 7.07907 7.10852 7.31834 7.39223 7.51265 7.70233 7.88557 8.68316 9.30236 9.81567 10.51832 11.23652 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.010008 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651661 B = 2797.096696 C = 3095.621024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.115 4.115 7 C 0.183 3.817 8 H 0.042 0.958 9 N -0.551 5.551 10 C -0.270 4.270 11 H 0.053 0.947 12 C 0.037 3.963 13 N -0.867 5.867 14 Si 0.880 3.120 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.286 1.286 18 C 0.152 3.848 19 C -0.153 4.153 20 C -0.247 4.247 21 C -0.117 4.117 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 5.662 -4.203 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.154 4.154 7 C 0.077 3.923 8 H 0.061 0.939 9 N -0.267 5.267 10 C -0.400 4.400 11 H 0.070 0.930 12 C -0.166 4.166 13 N -0.506 5.506 14 Si 0.709 3.291 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.213 1.213 18 C 0.043 3.957 19 C -0.192 4.192 20 C -0.288 4.288 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.228 5.536 -4.260 8.725 hybrid contribution -0.021 -1.028 0.534 1.158 sum -5.250 4.508 -3.726 7.859 Atomic orbital electron populations 1.21817 0.96254 1.01381 1.00653 1.21137 0.94489 0.99308 0.96036 0.92085 1.21551 0.96139 1.00313 0.96659 1.21580 0.95102 1.00146 0.98820 1.21825 1.00305 1.00199 0.93113 1.20324 0.91318 0.93771 0.86903 0.93937 1.43229 1.57413 1.08273 1.17827 1.18728 0.90898 0.83216 1.47140 0.92961 1.25462 0.95767 0.96865 0.98528 1.70128 0.98925 1.35708 1.45813 0.86624 0.78537 0.85207 0.78778 1.19894 1.21432 1.21269 1.20650 0.95201 0.96167 0.83633 1.22934 0.94827 0.98253 1.03156 1.23517 0.98827 0.99605 1.06846 1.21977 0.98260 1.00243 0.95107 0.92960 0.93140 0.93555 0.92279 0.93347 0.93198 0.93067 0.92521 0.91631 0.93765 0.90793 0.87571 0.91989 0.91908 0.90261 0.93146 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 2 C -0.09 -1.38 2.72 -90.62 -0.25 -1.63 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.63 5.20 -26.73 -0.14 -1.77 16 5 C -0.12 -1.92 5.92 -26.73 -0.16 -2.08 16 6 C -0.12 -2.36 5.17 -26.73 -0.14 -2.50 16 7 C 0.18 3.85 2.65 -67.91 -0.18 3.67 16 8 H 0.04 0.87 7.93 -51.93 -0.41 0.46 16 9 N -0.55 -13.41 2.57 -158.12 -0.41 -13.82 16 10 C -0.27 -7.11 7.41 -15.06 -0.11 -7.23 16 11 H 0.05 1.43 7.12 -52.49 -0.37 1.05 16 12 C 0.04 0.98 3.14 -17.43 -0.05 0.93 16 13 N -0.87 -24.13 11.57 55.49 0.64 -23.49 16 14 Si 0.88 21.08 29.44 -169.99 -5.00 16.08 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 C 0.15 3.60 5.98 -67.93 -0.41 3.19 16 19 C -0.15 -3.64 8.34 -26.73 -0.22 -3.86 16 20 C -0.25 -5.33 10.37 -26.73 -0.28 -5.61 16 21 C -0.12 -2.18 4.44 -26.71 -0.12 -2.30 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.49 7.66 -51.93 -0.40 1.10 16 31 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 32 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.11 2.79 5.08 -51.93 -0.26 2.53 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.78 8.14 -51.94 -0.42 1.35 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.29 7.17 -51.93 -0.37 0.92 16 LS Contribution 292.71 15.07 4.41 4.41 Total: -1.00 -26.96 292.71 -8.94 -35.90 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.87 Total: 1.66 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -1.71 Total: -20.74 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.24 Total: -37.31 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.00 Total: 16.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.96 -8.94 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706766229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.995 kcal (2) G-P(sol) polarization free energy of solvation -26.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds