Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47353 * 2 1 4 4 C 1.53007 * 109.46662 * 240.00530 * 2 1 3 5 5 C 1.52996 * 109.46925 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47480 * 59.99804 * 5 4 2 7 7 C 1.53003 * 109.46952 * 300.00265 * 6 5 4 8 8 H 1.09000 * 109.46733 * 299.99522 * 7 6 5 9 9 N 1.46498 * 109.46848 * 179.97438 * 7 6 5 10 10 C 1.36942 * 119.99981 * 299.99439 * 9 7 6 11 11 H 1.08001 * 119.99587 * 307.94542 * 10 9 7 12 12 C 1.38817 * 119.99688 * 127.94717 * 10 9 7 13 13 N 1.31610 * 119.99994 * 345.53630 * 12 10 9 14 14 Si 1.86800 * 119.99439 * 165.53995 * 12 10 9 15 15 H 1.48491 * 109.47505 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46824 * 120.00181 * 14 12 10 17 17 H 1.48503 * 109.46889 * 239.99254 * 14 12 10 18 18 C 1.46502 * 120.00221 * 120.00252 * 9 7 6 19 19 C 1.52995 * 117.50289 * 181.99914 * 18 9 7 20 20 C 1.52998 * 117.50114 * 113.37195 * 18 9 7 21 21 C 1.52994 * 109.47541 * 120.00546 * 2 1 3 22 22 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46403 * 299.99249 * 1 2 3 24 24 H 1.08994 * 109.47635 * 59.99329 * 1 2 3 25 25 H 1.09000 * 109.46803 * 299.99807 * 4 2 1 26 26 H 1.08994 * 109.46980 * 59.99739 * 4 2 1 27 27 H 1.09000 * 109.46955 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.47311 * 299.99605 * 5 4 2 29 29 H 1.08997 * 109.47295 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47011 * 59.99617 * 6 5 4 31 31 H 0.97003 * 120.00116 * 176.54507 * 13 12 10 32 32 H 1.09000 * 115.54640 * 327.70259 * 18 9 7 33 33 H 1.09003 * 117.49383 * 359.97438 * 19 18 9 34 34 H 1.08997 * 117.50022 * 145.01303 * 19 18 9 35 35 H 1.09003 * 117.49773 * 214.97533 * 20 18 9 36 36 H 1.08988 * 117.50091 * 0.02562 * 20 18 9 37 37 H 1.09000 * 109.47089 * 299.99906 * 21 2 1 38 38 H 1.09000 * 109.47243 * 59.99386 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2498 6 6 4.0806 -1.4416 -0.0006 7 6 3.5706 -0.7204 1.2487 8 1 3.9336 0.3073 1.2485 9 7 4.0590 -1.4111 2.4448 10 6 3.7282 -2.7222 2.6614 11 1 2.6939 -3.0310 2.6261 12 6 4.7223 -3.6541 2.9265 13 7 5.9828 -3.3560 2.6935 14 14 4.2707 -5.3314 3.6138 15 1 2.7981 -5.4160 3.7852 16 1 4.7218 -6.3892 2.6742 17 1 4.9335 -5.5222 4.9290 18 6 4.9013 -0.6992 3.4092 19 6 5.4181 -1.4884 4.6137 20 6 4.3189 -0.4406 4.8001 21 6 2.0401 -0.7213 1.2491 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 1.6766 -1.7488 -1.2494 26 1 1.6765 -0.2073 -2.1392 27 1 3.9332 -1.2348 -2.1396 28 1 3.9329 0.3071 -1.2500 29 1 5.1705 -1.4416 -0.0012 30 1 3.7175 -2.4694 -0.0004 31 1 6.6815 -3.9878 2.9253 32 1 5.5565 0.0634 2.9881 33 1 5.1310 -2.5373 4.6888 34 1 6.4135 -1.2453 4.9852 35 1 4.5913 0.4920 5.2944 36 1 3.3093 -0.8004 4.9979 37 1 1.6768 -0.2076 2.1391 38 1 1.6767 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706766229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 9.567960 kcal Electronic energy + Delta-G solvation = -16404.272521 eV Core-core repulsion = 14053.574264 eV Total energy + Delta-G solvation = -2350.698257 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91988 -38.09656 -34.56874 -33.57066 -32.59238 -29.43174 -27.06684 -26.33934 -22.96405 -22.77566 -22.09735 -21.36902 -20.39888 -18.15970 -16.94424 -16.48366 -15.88638 -15.59407 -15.09436 -14.88454 -14.65188 -14.16233 -13.80733 -13.25962 -13.18431 -13.08580 -12.79855 -12.61970 -12.53211 -12.23376 -12.06379 -11.98023 -11.68606 -11.54666 -11.29238 -11.20441 -10.89660 -10.76610 -10.54809 -10.15993 -8.27331 -7.64295 -5.56780 1.38597 1.44028 1.51566 2.47183 3.24644 3.48616 3.61674 3.95008 4.09551 4.21828 4.42368 4.45007 4.50119 4.65567 4.69293 4.73522 4.77135 4.89739 4.91039 4.95605 4.98966 5.03816 5.13510 5.18285 5.22675 5.29971 5.41647 5.44487 5.54518 5.58456 5.59889 5.72101 5.76616 5.81253 5.84599 6.60946 7.30489 7.89104 8.52032 9.17013 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.010008 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651661 B = 2797.096696 C = 3095.621024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.105 4.105 5 C -0.111 4.111 6 C -0.105 4.105 7 C 0.176 3.824 8 H 0.051 0.949 9 N -0.566 5.566 10 C -0.268 4.268 11 H 0.039 0.961 12 C 0.001 3.999 13 N -0.893 5.893 14 Si 0.931 3.069 15 H -0.271 1.271 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.133 3.867 19 C -0.165 4.165 20 C -0.217 4.217 21 C -0.105 4.105 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 7.119 -4.898 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.144 4.144 7 C 0.071 3.929 8 H 0.069 0.931 9 N -0.284 5.284 10 C -0.399 4.399 11 H 0.056 0.944 12 C -0.199 4.199 13 N -0.533 5.533 14 Si 0.758 3.242 15 H -0.196 1.196 16 H -0.216 1.216 17 H -0.213 1.213 18 C 0.025 3.975 19 C -0.203 4.203 20 C -0.258 4.258 21 C -0.144 4.144 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.405 7.001 -4.958 10.706 hybrid contribution 0.347 -1.448 0.758 1.671 sum -6.059 5.552 -4.201 9.229 Atomic orbital electron populations 1.21771 0.94392 1.01472 1.02049 1.21115 0.96030 0.99282 0.94068 0.90808 1.21537 0.94748 1.00187 0.97803 1.21520 0.96305 1.00396 0.96661 1.21666 0.98197 0.98995 0.95545 1.20533 0.92811 0.93730 0.85846 0.93086 1.43450 1.57628 1.08028 1.19266 1.18709 0.90241 0.84412 1.46546 0.94389 1.25915 0.95711 0.99249 0.99043 1.70220 0.99472 1.36509 1.47098 0.85831 0.78255 0.82091 0.77980 1.19581 1.21646 1.21264 1.20823 0.95900 0.96509 0.84263 1.22812 0.96071 0.97259 1.04155 1.23444 0.97487 0.99902 1.04942 1.21817 0.96344 0.99201 0.97051 0.93564 0.92840 0.91105 0.93329 0.90110 0.92074 0.91491 0.95623 0.94864 0.94195 0.90207 0.90346 0.91047 0.88629 0.91272 0.93830 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 2 C -0.09 -2.40 2.72 -10.79 -0.03 -2.43 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.85 5.20 30.60 0.16 -2.69 16 5 C -0.11 -3.39 5.92 30.59 0.18 -3.21 16 6 C -0.10 -4.34 5.17 30.60 0.16 -4.19 16 7 C 0.18 7.40 2.65 45.01 0.12 7.52 16 8 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 9 N -0.57 -27.94 2.57 -654.16 -1.68 -29.62 16 10 C -0.27 -14.49 7.41 84.03 0.62 -13.87 16 11 H 0.04 2.15 7.12 -2.91 -0.02 2.13 16 12 C 0.00 0.07 3.14 84.86 0.27 0.34 16 13 N -0.89 -50.87 11.57 21.65 0.25 -50.62 16 14 Si 0.93 44.25 29.44 68.60 2.02 46.27 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 C 0.13 6.27 5.98 44.99 0.27 6.54 16 19 C -0.16 -7.79 8.34 30.59 0.26 -7.53 16 20 C -0.22 -9.07 10.37 30.59 0.32 -8.75 16 21 C -0.10 -3.87 4.44 30.61 0.14 -3.73 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 1.56 7.66 -2.39 -0.02 1.54 16 31 H 0.25 13.82 8.32 -92.71 -0.77 13.05 16 32 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.08 4.18 5.08 -2.39 -0.01 4.17 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.56 7.17 -2.39 -0.02 1.55 16 Total: -1.00 -58.54 292.71 4.70 -53.85 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.99 Total: 14.75 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.12 Total: -34.62 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.43 Total: -80.24 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.02 Total: 46.27 kcal Total: -58.54 4.70 -53.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706766229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.414 kcal (2) G-P(sol) polarization free energy of solvation -58.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds