Wall clock time and date at job start Mon Mar 30 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 108.96576 * 2 1 4 4 C 1.54072 * 108.97750 * 241.19216 * 2 1 3 5 5 H 1.08997 * 108.91643 * 77.54724 * 4 2 1 6 6 C 1.50700 * 108.92017 * 318.99497 * 4 2 1 7 7 H 1.08001 * 120.00036 * 351.88109 * 6 4 2 8 8 C 1.37877 * 120.00021 * 171.88427 * 6 4 2 9 9 N 1.31515 * 120.00048 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00145 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47105 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47121 * 119.99837 * 10 8 6 13 13 H 1.48500 * 109.47307 * 240.00142 * 10 8 6 14 14 C 1.54294 * 112.28678 * 198.26811 * 4 2 1 15 15 C 1.50461 * 113.03131 * 318.30392 * 14 4 2 16 16 C 1.54509 * 108.84030 * 92.16144 * 15 14 4 17 17 C 1.45862 * 111.59972 * 282.79037 * 16 15 14 18 18 N 1.44275 * 108.97888 * 118.72347 * 2 1 3 19 19 C 1.46900 * 110.99530 * 339.95748 * 18 2 1 20 20 C 1.53009 * 117.49716 * 258.36565 * 19 18 2 21 21 C 1.52994 * 60.00020 * 252.51386 * 20 19 18 22 22 H 1.09000 * 109.47427 * 186.21817 * 1 2 3 23 23 H 1.09002 * 109.47205 * 306.22585 * 1 2 3 24 24 H 1.09003 * 109.46995 * 66.22602 * 1 2 3 25 25 H 0.96996 * 120.00102 * 179.97438 * 9 8 6 26 26 H 1.09000 * 108.76672 * 197.38617 * 14 4 2 27 27 H 1.08998 * 108.67740 * 79.15983 * 14 4 2 28 28 H 1.08998 * 109.57459 * 332.35564 * 15 14 4 29 29 H 1.08992 * 109.67769 * 212.02910 * 15 14 4 30 30 H 1.09000 * 109.04810 * 162.25241 * 16 15 14 31 31 H 1.08992 * 109.05813 * 43.34326 * 16 15 14 32 32 H 1.09000 * 108.79776 * 182.21058 * 17 16 15 33 33 H 1.09003 * 108.79925 * 300.44789 * 17 16 15 34 34 H 1.09000 * 115.55807 * 44.07694 * 19 18 2 35 35 H 1.09001 * 117.49416 * 0.02562 * 20 19 18 36 36 H 1.09000 * 117.49833 * 145.02384 * 20 19 18 37 37 H 1.09001 * 117.49786 * 252.51030 * 21 20 19 38 38 H 1.08994 * 117.52226 * 107.48046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8842 1.0307 0.0000 4 6 2.0310 -0.7021 -1.2767 5 1 1.9357 -0.0157 -2.1180 6 6 1.1726 -1.9129 -1.5374 7 1 0.4478 -2.2296 -0.8019 8 6 1.3125 -2.6166 -2.7148 9 7 2.1954 -2.2313 -3.6102 10 14 0.2489 -4.1179 -3.0377 11 1 -0.6576 -4.3400 -1.8827 12 1 -0.5582 -3.8981 -4.2646 13 1 1.1166 -5.3087 -3.2227 14 6 3.5033 -1.1484 -1.1596 15 6 4.3791 -0.1205 -0.4960 16 6 4.4281 -0.4110 1.0207 17 6 3.2107 0.0309 1.6917 18 7 1.9992 -0.6557 1.1964 19 6 0.9520 -0.6840 2.2263 20 6 1.0494 0.3375 3.3612 21 6 1.3548 -1.1372 3.6310 22 1 -0.3634 -1.0216 0.1113 23 1 -0.3634 0.6073 0.8290 24 1 -0.3633 0.4143 -0.9405 25 1 2.2941 -2.7266 -4.4383 26 1 3.8903 -1.3464 -2.1591 27 1 3.5435 -2.0705 -0.5796 28 1 3.9663 0.8742 -0.6642 29 1 5.3857 -0.1732 -0.9107 30 1 5.2823 0.1085 1.4550 31 1 4.5498 -1.4832 1.1739 32 1 3.3100 -0.1592 2.7604 33 1 3.0942 1.1037 1.5374 34 1 -0.0443 -0.9547 1.8765 35 1 1.8904 1.0308 3.3434 36 1 0.1172 0.7392 3.7582 37 1 0.6234 -1.7057 4.2055 38 1 2.3966 -1.4148 3.7909 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709961952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:51 Heat of formation + Delta-G solvation = 37.442139 kcal Electronic energy + Delta-G solvation = -16670.128841 eV Core-core repulsion = 14320.639299 eV Total energy + Delta-G solvation = -2349.489542 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58809 -35.98954 -33.66989 -32.53174 -30.67251 -27.32027 -26.34118 -23.90508 -22.20744 -21.98844 -20.98300 -19.10000 -18.10037 -16.40904 -15.93255 -15.27798 -14.64145 -13.88273 -13.70481 -13.28331 -12.90440 -12.65816 -12.25970 -11.73472 -11.56788 -11.31251 -11.18983 -11.00628 -10.82196 -10.68165 -10.41855 -10.28974 -10.09217 -10.00967 -9.79989 -9.40251 -9.32407 -8.96790 -8.43645 -8.19701 -7.32101 -5.85285 -3.84505 3.37554 3.45860 3.49455 4.13629 4.51028 4.56282 5.16848 5.25817 5.31713 5.33672 5.48024 5.74314 5.86104 5.88076 5.99499 6.03504 6.04654 6.18982 6.25191 6.26892 6.35510 6.41932 6.50824 6.62119 6.68298 6.86227 6.87780 7.07791 7.19554 7.39373 7.56532 7.79626 7.88242 7.99855 8.19701 8.25666 8.66844 9.17611 9.76766 11.23756 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.010602 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.252080 B = 2640.427032 C = 3183.571051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 H 0.020 0.980 4 C 0.063 3.937 5 H 0.026 0.974 6 C -0.489 4.489 7 H 0.060 0.940 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.884 3.116 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.287 1.287 14 C -0.096 4.096 15 C -0.115 4.115 16 C -0.113 4.113 17 C 0.055 3.945 18 N -0.474 5.474 19 C 0.035 3.965 20 C -0.233 4.233 21 C -0.183 4.183 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.255 0.745 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 4.638 10.338 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 H 0.038 0.962 4 C 0.044 3.956 5 H 0.045 0.955 6 C -0.527 4.527 7 H 0.078 0.922 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.214 1.214 14 C -0.134 4.134 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.072 4.072 18 N -0.196 5.196 19 C -0.075 4.075 20 C -0.273 4.273 21 C -0.221 4.221 22 H 0.091 0.909 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.476 4.084 10.003 10.815 hybrid contribution -0.664 -0.064 -0.010 0.667 sum -0.188 4.021 9.993 10.773 Atomic orbital electron populations 1.22174 0.96268 1.01871 0.99761 1.21655 0.94207 0.93993 0.91487 0.96228 1.19123 0.92000 0.95266 0.89218 0.95547 1.21291 1.19032 1.10823 1.01598 0.92151 1.24970 0.95554 0.97344 0.96530 1.69952 1.35018 1.40085 1.08542 0.86667 0.80556 0.83647 0.77868 1.19938 1.21480 1.21370 1.21220 0.96011 0.96442 0.99769 1.21481 0.99305 1.00412 0.94088 1.20593 0.95730 1.01818 0.96958 1.21075 0.91949 0.95600 0.98602 1.61585 1.02744 1.52375 1.02855 1.23006 0.97705 1.00525 0.86237 1.23548 1.02932 0.92941 1.07859 1.23060 1.02209 0.96513 1.00291 0.90864 0.95181 0.92668 0.93489 0.91819 0.93388 0.93518 0.93899 0.93309 0.91588 0.92146 0.95513 0.85273 0.89079 0.89588 0.89074 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 6.86 37.16 0.25 -2.50 16 2 C 0.09 1.95 2.11 -68.56 -0.14 1.80 16 3 H 0.02 0.40 6.50 -51.93 -0.34 0.07 16 4 C 0.06 1.54 2.02 -90.53 -0.18 1.36 16 5 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 6 C -0.49 -13.10 7.49 -34.44 -0.26 -13.36 16 7 H 0.06 1.61 5.79 -52.49 -0.30 1.31 16 8 C 0.06 1.55 5.32 -17.82 -0.09 1.46 16 9 N -0.90 -25.91 11.91 55.43 0.66 -25.25 16 10 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C -0.10 -2.27 4.41 -27.32 -0.12 -2.40 16 15 C -0.12 -2.23 5.60 -27.21 -0.15 -2.38 16 16 C -0.11 -1.92 5.53 -29.32 -0.16 -2.08 16 17 C 0.06 0.92 3.62 -6.71 -0.02 0.90 16 18 N -0.47 -8.96 4.46 -223.46 -1.00 -9.96 16 19 C 0.04 0.57 4.72 -67.71 -0.32 0.25 16 20 C -0.23 -3.20 9.63 -26.73 -0.26 -3.46 16 21 C -0.18 -2.56 9.82 -26.73 -0.26 -2.82 16 22 H 0.07 1.48 5.19 -51.93 -0.27 1.21 16 23 H 0.03 0.49 6.95 -51.93 -0.36 0.13 16 24 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.68 6.96 -51.93 -0.36 1.32 16 27 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 28 H 0.05 0.90 7.15 -51.93 -0.37 0.53 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.18 7.59 -51.93 -0.39 0.79 16 32 H 0.06 0.91 5.03 -51.93 -0.26 0.65 16 33 H 0.03 0.45 7.04 -51.93 -0.37 0.08 16 34 H 0.13 2.15 5.54 -51.93 -0.29 1.86 16 35 H 0.09 1.25 6.33 -51.93 -0.33 0.92 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 LS Contribution 275.68 15.07 4.15 4.15 Total: -1.00 -27.89 275.68 -8.97 -36.86 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.05 Total: 0.82 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -1.72 Total: -23.23 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.34 Total: -35.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.89 -8.97 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.303 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds