Wall clock time and date at job start Mon Mar 30 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 108.96576 * 2 1 4 4 C 1.54072 * 108.97750 * 241.19216 * 2 1 3 5 5 H 1.08997 * 108.91643 * 77.54724 * 4 2 1 6 6 C 1.50700 * 108.92017 * 318.99497 * 4 2 1 7 7 H 1.08001 * 120.00036 * 351.88109 * 6 4 2 8 8 C 1.37877 * 120.00021 * 171.88427 * 6 4 2 9 9 N 1.31515 * 120.00048 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00145 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47105 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47121 * 119.99837 * 10 8 6 13 13 H 1.48500 * 109.47307 * 240.00142 * 10 8 6 14 14 C 1.54294 * 112.28678 * 198.26811 * 4 2 1 15 15 C 1.50461 * 113.03131 * 318.30392 * 14 4 2 16 16 C 1.54509 * 108.84030 * 92.16144 * 15 14 4 17 17 C 1.45862 * 111.59972 * 282.79037 * 16 15 14 18 18 N 1.44275 * 108.97888 * 118.72347 * 2 1 3 19 19 C 1.46900 * 110.99530 * 339.95748 * 18 2 1 20 20 C 1.53009 * 117.49716 * 258.36565 * 19 18 2 21 21 C 1.52994 * 60.00020 * 252.51386 * 20 19 18 22 22 H 1.09000 * 109.47427 * 186.21817 * 1 2 3 23 23 H 1.09002 * 109.47205 * 306.22585 * 1 2 3 24 24 H 1.09003 * 109.46995 * 66.22602 * 1 2 3 25 25 H 0.96996 * 120.00102 * 179.97438 * 9 8 6 26 26 H 1.09000 * 108.76672 * 197.38617 * 14 4 2 27 27 H 1.08998 * 108.67740 * 79.15983 * 14 4 2 28 28 H 1.08998 * 109.57459 * 332.35564 * 15 14 4 29 29 H 1.08992 * 109.67769 * 212.02910 * 15 14 4 30 30 H 1.09000 * 109.04810 * 162.25241 * 16 15 14 31 31 H 1.08992 * 109.05813 * 43.34326 * 16 15 14 32 32 H 1.09000 * 108.79776 * 182.21058 * 17 16 15 33 33 H 1.09003 * 108.79925 * 300.44789 * 17 16 15 34 34 H 1.09000 * 115.55807 * 44.07694 * 19 18 2 35 35 H 1.09001 * 117.49416 * 0.02562 * 20 19 18 36 36 H 1.09000 * 117.49833 * 145.02384 * 20 19 18 37 37 H 1.09001 * 117.49786 * 252.51030 * 21 20 19 38 38 H 1.08994 * 117.52226 * 107.48046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8842 1.0307 0.0000 4 6 2.0310 -0.7021 -1.2767 5 1 1.9357 -0.0157 -2.1180 6 6 1.1726 -1.9129 -1.5374 7 1 0.4478 -2.2296 -0.8019 8 6 1.3125 -2.6166 -2.7148 9 7 2.1954 -2.2313 -3.6102 10 14 0.2489 -4.1179 -3.0377 11 1 -0.6576 -4.3400 -1.8827 12 1 -0.5582 -3.8981 -4.2646 13 1 1.1166 -5.3087 -3.2227 14 6 3.5033 -1.1484 -1.1596 15 6 4.3791 -0.1205 -0.4960 16 6 4.4281 -0.4110 1.0207 17 6 3.2107 0.0309 1.6917 18 7 1.9992 -0.6557 1.1964 19 6 0.9520 -0.6840 2.2263 20 6 1.0494 0.3375 3.3612 21 6 1.3548 -1.1372 3.6310 22 1 -0.3634 -1.0216 0.1113 23 1 -0.3634 0.6073 0.8290 24 1 -0.3633 0.4143 -0.9405 25 1 2.2941 -2.7266 -4.4383 26 1 3.8903 -1.3464 -2.1591 27 1 3.5435 -2.0705 -0.5796 28 1 3.9663 0.8742 -0.6642 29 1 5.3857 -0.1732 -0.9107 30 1 5.2823 0.1085 1.4550 31 1 4.5498 -1.4832 1.1739 32 1 3.3100 -0.1592 2.7604 33 1 3.0942 1.1037 1.5374 34 1 -0.0443 -0.9547 1.8765 35 1 1.8904 1.0308 3.3434 36 1 0.1172 0.7392 3.7582 37 1 0.6234 -1.7057 4.2055 38 1 2.3966 -1.4148 3.7909 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709961952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:51 Heat of formation + Delta-G solvation = 21.398431 kcal Electronic energy + Delta-G solvation = -16670.824549 eV Core-core repulsion = 14320.639299 eV Total energy + Delta-G solvation = -2350.185250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00194 -37.45110 -35.34128 -34.24022 -32.44009 -28.88537 -28.14415 -25.68845 -23.66270 -23.25144 -22.44043 -20.65202 -19.73705 -18.13019 -17.46237 -16.82643 -16.46286 -15.48566 -15.21044 -14.85789 -14.47388 -14.06916 -13.97647 -13.45494 -13.15865 -12.84263 -12.79434 -12.66739 -12.41308 -12.26181 -12.01016 -11.93482 -11.60993 -11.43356 -11.28056 -11.14797 -10.90543 -10.73429 -10.41531 -10.30856 -8.71817 -7.98511 -6.03415 1.40722 1.43465 1.53609 2.50279 2.92757 3.23942 3.33959 3.95480 3.97442 4.12147 4.20537 4.31157 4.47592 4.48817 4.52862 4.65021 4.73408 4.75943 4.83722 4.99245 5.01831 5.09024 5.13166 5.19911 5.23271 5.31786 5.34471 5.44531 5.50942 5.56290 5.73133 5.82616 6.04058 6.19825 6.43361 6.56073 6.68008 7.07039 7.60408 9.09512 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.010602 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.252080 B = 2640.427032 C = 3183.571051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.104 3.896 3 H 0.022 0.978 4 C 0.059 3.941 5 H -0.012 1.012 6 C -0.490 4.490 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.928 5.928 10 Si 0.943 3.057 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.289 1.289 14 C -0.080 4.080 15 C -0.111 4.111 16 C -0.107 4.107 17 C 0.054 3.946 18 N -0.496 5.496 19 C 0.003 3.997 20 C -0.211 4.211 21 C -0.172 4.172 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 5.094 12.877 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.004 4.004 3 H 0.040 0.960 4 C 0.040 3.960 5 H 0.006 0.994 6 C -0.529 4.529 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.569 5.569 10 Si 0.770 3.230 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.215 1.215 14 C -0.119 4.119 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.073 4.073 18 N -0.218 5.218 19 C -0.106 4.106 20 C -0.251 4.251 21 C -0.209 4.209 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.176 4.541 12.566 13.363 hybrid contribution -0.569 -0.195 -0.782 0.986 sum -0.394 4.346 11.785 12.567 Atomic orbital electron populations 1.22063 0.95399 1.01456 1.00203 1.21339 0.94823 0.93439 0.90833 0.95977 1.19091 0.92493 0.94044 0.90418 0.99420 1.21595 1.18798 1.11196 1.01269 0.92249 1.25706 0.96891 1.00109 0.96709 1.70098 1.36622 1.41320 1.08909 0.85725 0.79047 0.80325 0.77865 1.19010 1.21235 1.21511 1.20984 0.96346 0.96948 0.97598 1.21395 0.98732 0.98734 0.96049 1.20561 0.97509 1.01554 0.94825 1.21131 0.90782 0.95662 0.99719 1.61431 1.04272 1.52926 1.03181 1.22989 0.96892 1.03986 0.86716 1.23566 1.03877 0.92710 1.04930 1.23141 1.02700 0.97093 0.97996 0.92254 0.92099 0.94115 0.93767 0.95667 0.95506 0.93458 0.92777 0.89819 0.92784 0.89854 0.94923 0.86033 0.88645 0.87834 0.87432 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 6.86 71.98 0.49 -4.57 16 2 C 0.10 4.26 2.11 45.77 0.10 4.35 16 3 H 0.02 0.89 6.50 -2.39 -0.02 0.87 16 4 C 0.06 2.96 2.02 -10.74 -0.02 2.94 16 5 H -0.01 -0.71 8.13 -2.39 -0.02 -0.73 16 6 C -0.49 -26.91 7.49 25.60 0.19 -26.72 16 7 H 0.06 3.22 5.79 -2.91 -0.02 3.20 16 8 C 0.00 0.13 5.32 84.65 0.45 0.58 16 9 N -0.93 -55.73 11.91 21.45 0.26 -55.48 16 10 Si 0.94 45.21 29.54 68.60 2.03 47.24 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 C -0.08 -3.92 4.41 30.21 0.13 -3.79 16 15 C -0.11 -4.26 5.60 30.29 0.17 -4.09 16 16 C -0.11 -3.38 5.53 28.92 0.16 -3.22 16 17 C 0.05 1.65 3.62 83.94 0.30 1.96 16 18 N -0.50 -17.99 4.46 -860.91 -3.84 -21.83 16 19 C 0.00 0.10 4.72 44.92 0.21 0.31 16 20 C -0.21 -4.94 9.63 30.60 0.29 -4.65 16 21 C -0.17 -4.18 9.82 30.59 0.30 -3.88 16 22 H 0.06 2.39 5.19 -2.39 -0.01 2.38 16 23 H 0.06 1.90 6.95 -2.39 -0.02 1.88 16 24 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.02 1.38 6.96 -2.39 -0.02 1.36 16 27 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 28 H 0.05 1.79 7.15 -2.39 -0.02 1.77 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.85 7.59 -2.39 -0.02 1.83 16 32 H 0.08 2.19 5.03 -2.39 -0.01 2.17 16 33 H 0.03 0.98 7.04 -2.39 -0.02 0.96 16 34 H 0.12 3.81 5.54 -2.39 -0.01 3.80 16 35 H 0.10 2.18 6.33 -2.39 -0.02 2.17 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.27 6.92 -2.39 -0.02 2.25 16 Total: -1.00 -61.55 275.68 2.25 -59.30 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.03 Total: 11.54 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 2.78 Total: -40.77 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.59 Total: -77.31 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -61.55 2.25 -59.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.698 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds