Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47146 * 240.00251 * 2 1 3 5 5 C 1.50704 * 109.46772 * 174.99445 * 4 2 1 6 6 H 1.07999 * 120.00623 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99625 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46945 * 90.00655 * 9 7 5 11 11 H 1.48497 * 109.47202 * 210.00437 * 9 7 5 12 12 H 1.48495 * 109.47356 * 330.01011 * 9 7 5 13 13 N 1.46895 * 109.47253 * 119.99891 * 2 1 3 14 14 C 1.46901 * 111.00178 * 275.00034 * 13 2 1 15 15 H 1.09007 * 115.55630 * 9.31090 * 14 13 2 16 16 C 1.52996 * 117.50214 * 223.62543 * 14 13 2 17 17 C 1.52995 * 117.50024 * 155.00103 * 14 13 2 18 18 H 1.08997 * 117.51845 * 214.97700 * 17 14 13 19 19 C 1.53006 * 117.49943 * 0.02562 * 17 14 13 20 20 H 1.08998 * 115.54561 * 34.42962 * 19 17 14 21 21 C 1.53000 * 117.49988 * 248.76622 * 19 17 14 22 22 C 1.52993 * 117.50097 * 180.10069 * 19 17 14 23 23 H 1.09006 * 117.50059 * 359.97438 * 22 19 17 24 24 C 1.52998 * 117.49908 * 214.97852 * 22 19 17 25 25 H 1.09002 * 109.46829 * 60.00191 * 1 2 3 26 26 H 1.09007 * 109.46652 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47318 * 299.99668 * 1 2 3 28 28 H 1.08992 * 109.46808 * 294.99569 * 4 2 1 29 29 H 1.09000 * 109.47290 * 54.99713 * 4 2 1 30 30 H 0.96996 * 120.00470 * 179.97438 * 8 7 5 31 31 H 1.00894 * 111.00429 * 38.95697 * 13 2 1 32 32 H 1.09001 * 117.50123 * 145.02252 * 16 14 13 33 33 H 1.09009 * 117.49697 * 359.97438 * 16 14 13 34 34 H 1.09002 * 117.50034 * 359.97438 * 21 19 17 35 35 H 1.08994 * 117.49821 * 145.02184 * 21 19 17 36 36 H 1.09000 * 109.46849 * 60.00735 * 24 22 19 37 37 H 1.09003 * 109.47159 * 179.97438 * 24 22 19 38 38 H 1.08998 * 109.47474 * 300.00215 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6147 -1.3128 6 1 4.0791 -0.0859 -0.5393 7 6 4.2305 -1.1933 -2.3579 8 7 3.5766 -1.8376 -3.2996 9 14 6.0921 -1.0607 -2.4370 10 1 6.7011 -2.2127 -1.7247 11 1 6.5291 -1.0691 -3.8562 12 1 6.5261 0.2050 -1.7929 13 7 2.0197 -0.6924 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.6226 1.1992 2.1953 16 6 3.3267 0.1579 3.2348 17 6 1.9931 -0.3910 3.7455 18 1 1.4744 0.1816 4.5144 19 6 1.8456 -1.9109 3.8421 20 1 2.3665 -2.4833 3.0746 21 6 0.5109 -2.4603 4.3494 22 6 1.7538 -2.5243 5.2407 23 1 1.7989 -1.8451 6.0921 24 6 2.3996 -3.8946 5.4548 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.7517 -1.7714 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 4.0609 -2.2443 -4.0350 31 1 1.4497 -1.4979 1.4100 32 1 3.6854 1.0919 3.6676 33 1 4.0986 -0.5640 2.9678 34 1 -0.2621 -1.7391 4.6148 35 1 0.1539 -3.3946 3.9161 36 1 3.4659 -3.8317 5.2374 37 1 2.2580 -4.2052 6.4900 38 1 1.9355 -4.6230 4.7899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716579614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = 30.811027 kcal Electronic energy + Delta-G solvation = -15359.723205 eV Core-core repulsion = 13009.946117 eV Total energy + Delta-G solvation = -2349.777089 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.83267 -36.62004 -34.58066 -32.26613 -28.78822 -28.37199 -27.17142 -23.38290 -23.04303 -21.19665 -20.60339 -19.73332 -19.36650 -16.18505 -15.74033 -15.31577 -14.37875 -14.15074 -13.69574 -13.61328 -13.14436 -12.74462 -12.65393 -12.15617 -11.80986 -11.64878 -11.48067 -11.42442 -11.09876 -10.96325 -10.78806 -10.59379 -10.49699 -10.35580 -9.99735 -9.75282 -9.23435 -9.05677 -8.89015 -8.21015 -7.41940 -5.83339 -3.80477 3.42657 3.48148 3.52481 3.64562 4.37007 4.55459 4.60838 4.72639 4.95408 5.09038 5.29979 5.40997 5.47242 5.48578 5.53602 5.72163 5.78619 5.81617 5.82496 5.83833 5.90839 6.01685 6.06814 6.13943 6.23069 6.27866 6.44643 6.51310 6.62270 6.67348 7.08151 7.63577 7.74578 8.08709 8.11916 8.23011 8.65578 9.25258 9.80600 11.28907 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.006783 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.935127 B = 4127.031129 C = 4540.260732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.631 5.631 14 C 0.038 3.962 15 H 0.090 0.910 16 C -0.165 4.165 17 C -0.145 4.145 18 H 0.094 0.906 19 C -0.110 4.110 20 H 0.114 0.886 21 C -0.178 4.178 22 C -0.154 4.154 23 H 0.098 0.902 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.018 0.982 30 H 0.256 0.744 31 H 0.335 0.665 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 0.616 15.312 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.261 5.261 14 C -0.073 4.073 15 H 0.108 0.892 16 C -0.204 4.204 17 C -0.164 4.164 18 H 0.112 0.888 19 C -0.128 4.128 20 H 0.132 0.868 21 C -0.215 4.215 22 C -0.172 4.172 23 H 0.117 0.883 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.622 0.593 14.957 15.666 hybrid contribution 0.082 0.140 0.119 0.201 sum -4.540 0.734 15.076 15.762 Atomic orbital electron populations 1.22582 0.99487 1.01173 1.00559 1.21867 0.89858 0.98162 0.92042 0.91686 1.19113 0.96280 0.95345 0.89726 1.21168 0.91893 1.32655 1.06720 0.92282 1.25007 0.97940 0.96006 0.96070 1.69964 1.35119 1.37160 1.12421 0.86636 0.86564 0.78292 0.76689 1.20966 1.21656 1.20091 1.60274 1.56839 1.07774 1.01240 1.22453 1.00983 0.96773 0.87134 0.89205 1.23163 0.91929 1.02099 1.03195 1.22062 1.02695 0.93299 0.98345 0.88779 1.21774 1.00205 0.93674 0.97180 0.86757 1.23104 0.91378 1.02757 1.04213 1.22322 1.01727 0.98693 0.94456 0.88344 1.21348 1.00635 0.94630 1.01274 0.92567 0.93093 0.94383 0.96576 0.96429 0.93402 0.84466 0.89559 0.88174 0.89283 0.88890 0.92152 0.92600 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.16 37.16 0.34 -2.72 16 2 C 0.09 1.84 2.43 -67.71 -0.16 1.68 16 3 H 0.06 1.37 7.73 -51.92 -0.40 0.97 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.49 -13.90 8.84 -34.44 -0.30 -14.20 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.49 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.63 -11.95 5.92 -99.74 -0.59 -12.54 16 14 C 0.04 0.61 5.95 -67.72 -0.40 0.20 16 15 H 0.09 1.39 7.77 -51.93 -0.40 0.98 16 16 C -0.17 -2.47 10.18 -26.73 -0.27 -2.75 16 17 C -0.14 -1.95 5.85 -90.62 -0.53 -2.48 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 19 C -0.11 -1.44 4.50 -90.62 -0.41 -1.85 16 20 H 0.11 1.73 7.55 -51.93 -0.39 1.34 16 21 C -0.18 -2.03 9.90 -26.69 -0.26 -2.29 16 22 C -0.15 -1.72 6.13 -90.58 -0.56 -2.28 16 23 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 24 C -0.12 -1.24 10.19 37.16 0.38 -0.87 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 31 H 0.34 6.04 7.01 -39.29 -0.28 5.77 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -29.93 313.00 -9.48 -39.41 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.91 Total: 3.52 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -2.41 Total: -25.51 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.15 Total: -39.60 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.93 -9.48 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds