Wall clock time and date at job start Mon Mar 30 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.53005 * 109.47146 * 240.00251 * 2 1 3 5 5 C 1.50704 * 109.46772 * 174.99445 * 4 2 1 6 6 H 1.07999 * 120.00623 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99625 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46945 * 90.00655 * 9 7 5 11 11 H 1.48497 * 109.47202 * 210.00437 * 9 7 5 12 12 H 1.48495 * 109.47356 * 330.01011 * 9 7 5 13 13 N 1.46895 * 109.47253 * 119.99891 * 2 1 3 14 14 C 1.46901 * 111.00178 * 275.00034 * 13 2 1 15 15 H 1.09007 * 115.55630 * 9.31090 * 14 13 2 16 16 C 1.52996 * 117.50214 * 223.62543 * 14 13 2 17 17 C 1.52995 * 117.50024 * 155.00103 * 14 13 2 18 18 H 1.08997 * 117.51845 * 214.97700 * 17 14 13 19 19 C 1.53006 * 117.49943 * 0.02562 * 17 14 13 20 20 H 1.08998 * 115.54561 * 34.42962 * 19 17 14 21 21 C 1.53000 * 117.49988 * 248.76622 * 19 17 14 22 22 C 1.52993 * 117.50097 * 180.10069 * 19 17 14 23 23 H 1.09006 * 117.50059 * 359.97438 * 22 19 17 24 24 C 1.52998 * 117.49908 * 214.97852 * 22 19 17 25 25 H 1.09002 * 109.46829 * 60.00191 * 1 2 3 26 26 H 1.09007 * 109.46652 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47318 * 299.99668 * 1 2 3 28 28 H 1.08992 * 109.46808 * 294.99569 * 4 2 1 29 29 H 1.09000 * 109.47290 * 54.99713 * 4 2 1 30 30 H 0.96996 * 120.00470 * 179.97438 * 8 7 5 31 31 H 1.00894 * 111.00429 * 38.95697 * 13 2 1 32 32 H 1.09001 * 117.50123 * 145.02252 * 16 14 13 33 33 H 1.09009 * 117.49697 * 359.97438 * 16 14 13 34 34 H 1.09002 * 117.50034 * 359.97438 * 21 19 17 35 35 H 1.08994 * 117.49821 * 145.02184 * 21 19 17 36 36 H 1.09000 * 109.46849 * 60.00735 * 24 22 19 37 37 H 1.09003 * 109.47159 * 179.97438 * 24 22 19 38 38 H 1.08998 * 109.47474 * 300.00215 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6147 -1.3128 6 1 4.0791 -0.0859 -0.5393 7 6 4.2305 -1.1933 -2.3579 8 7 3.5766 -1.8376 -3.2996 9 14 6.0921 -1.0607 -2.4370 10 1 6.7011 -2.2127 -1.7247 11 1 6.5291 -1.0691 -3.8562 12 1 6.5261 0.2050 -1.7929 13 7 2.0197 -0.6924 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.6226 1.1992 2.1953 16 6 3.3267 0.1579 3.2348 17 6 1.9931 -0.3910 3.7455 18 1 1.4744 0.1816 4.5144 19 6 1.8456 -1.9109 3.8421 20 1 2.3665 -2.4833 3.0746 21 6 0.5109 -2.4603 4.3494 22 6 1.7538 -2.5243 5.2407 23 1 1.7989 -1.8451 6.0921 24 6 2.3996 -3.8946 5.4548 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.7517 -1.7714 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 4.0609 -2.2443 -4.0350 31 1 1.4497 -1.4979 1.4100 32 1 3.6854 1.0919 3.6676 33 1 4.0986 -0.5640 2.9678 34 1 -0.2621 -1.7391 4.6148 35 1 0.1539 -3.3946 3.9161 36 1 3.4659 -3.8317 5.2374 37 1 2.2580 -4.2052 6.4900 38 1 1.9355 -4.6230 4.7899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716579614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:31 Heat of formation + Delta-G solvation = 14.183154 kcal Electronic energy + Delta-G solvation = -15360.444244 eV Core-core repulsion = 13009.946117 eV Total energy + Delta-G solvation = -2350.498127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96299 -37.90580 -36.04602 -34.36150 -30.35871 -29.37651 -28.95663 -25.09306 -24.40731 -22.39265 -21.65914 -21.29235 -20.51625 -18.37457 -16.96733 -16.73967 -16.25353 -15.32663 -15.14991 -14.81687 -14.37453 -14.25133 -13.92331 -13.54276 -13.31963 -13.20053 -13.00720 -12.71877 -12.50592 -12.39692 -12.32072 -12.02763 -11.97643 -11.78072 -11.67186 -11.14144 -11.06073 -10.68088 -10.48778 -10.11592 -8.84293 -8.09469 -6.14021 1.40482 1.41880 1.52589 2.47297 2.62368 3.19873 3.29308 3.38041 3.62788 3.97316 4.12827 4.22746 4.33387 4.37737 4.41201 4.43295 4.52448 4.56339 4.64140 4.83377 4.94474 4.97064 4.97671 5.00816 5.10150 5.21363 5.23131 5.29739 5.33464 5.44708 5.51670 5.53706 5.70565 5.90429 6.36708 6.55297 6.73739 6.99963 7.51374 9.02764 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.006783 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.935127 B = 4127.031129 C = 4540.260732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 H 0.059 0.941 4 C 0.037 3.963 5 C -0.497 4.497 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.649 5.649 14 C 0.018 3.982 15 H 0.099 0.901 16 C -0.173 4.173 17 C -0.114 4.114 18 H 0.119 0.881 19 C -0.134 4.134 20 H 0.087 0.913 21 C -0.168 4.168 22 C -0.142 4.142 23 H 0.112 0.888 24 C -0.124 4.124 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.065 0.935 28 H -0.011 1.011 29 H -0.007 1.007 30 H 0.258 0.742 31 H 0.337 0.663 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 1.244 17.428 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 H 0.077 0.923 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.279 5.279 14 C -0.093 4.093 15 H 0.117 0.883 16 C -0.211 4.211 17 C -0.133 4.133 18 H 0.137 0.863 19 C -0.152 4.152 20 H 0.105 0.895 21 C -0.205 4.205 22 C -0.160 4.160 23 H 0.130 0.870 24 C -0.181 4.181 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.011 0.989 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.753 1.229 17.090 17.782 hybrid contribution 0.118 -0.088 -0.521 0.542 sum -4.635 1.141 16.569 17.243 Atomic orbital electron populations 1.22424 0.96632 1.01645 1.01927 1.21513 0.92088 0.96767 0.90525 0.92313 1.18998 0.95156 0.94101 0.91762 1.21479 0.93397 1.32208 1.06431 0.92713 1.25867 1.02916 0.95739 0.95787 1.70091 1.37047 1.38129 1.13096 0.85570 0.80653 0.78581 0.76924 1.20468 1.21014 1.19141 1.60082 1.57276 1.08610 1.01977 1.22496 1.02478 0.96916 0.87362 0.88295 1.23185 0.91799 1.02651 1.03509 1.22081 1.00940 0.93554 0.96766 0.86312 1.21677 1.02034 0.93370 0.98157 0.89528 1.23163 0.91054 1.02869 1.03422 1.22421 1.01045 0.98961 0.93544 0.87014 1.21382 1.00096 0.94219 1.02393 0.92518 0.93083 0.91599 0.99285 0.98867 0.93284 0.84261 0.87621 0.90539 0.88009 0.88787 0.92816 0.90741 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 9.16 71.98 0.66 -4.90 16 2 C 0.10 4.15 2.43 44.92 0.11 4.26 16 3 H 0.06 2.47 7.73 -2.38 -0.02 2.46 16 4 C 0.04 1.99 4.65 29.85 0.14 2.13 16 5 C -0.50 -29.04 8.84 25.60 0.23 -28.81 16 6 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 9 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.65 -24.61 5.92 -469.47 -2.78 -27.39 16 14 C 0.02 0.56 5.95 44.91 0.27 0.82 16 15 H 0.10 2.85 7.77 -2.38 -0.02 2.83 16 16 C -0.17 -4.97 10.18 30.59 0.31 -4.66 16 17 C -0.11 -2.83 5.85 -10.79 -0.06 -2.89 16 18 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 19 C -0.13 -3.33 4.50 -10.79 -0.05 -3.38 16 20 H 0.09 2.66 7.55 -2.39 -0.02 2.64 16 21 C -0.17 -3.44 9.90 30.62 0.30 -3.14 16 22 C -0.14 -2.83 6.13 -10.77 -0.07 -2.90 16 23 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 24 C -0.12 -2.31 10.19 71.98 0.73 -1.58 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 27 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.34 12.24 7.01 -89.70 -0.63 11.61 16 32 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 Total: -1.00 -64.89 313.00 2.94 -61.96 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.37 Total: 20.56 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.03 Total: -45.02 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.50 Total: -86.15 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -64.89 2.94 -61.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716579614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.141 kcal (2) G-P(sol) polarization free energy of solvation -64.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds