Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09001 * 109.47027 * 305.62814 * 3 2 1 5 5 C 1.50700 * 109.47043 * 185.62327 * 3 2 1 6 6 H 1.07997 * 120.00276 * 245.08390 * 5 3 2 7 7 C 1.37870 * 119.99798 * 65.08697 * 5 3 2 8 8 N 1.31522 * 120.00288 * 7.00471 * 7 5 3 9 9 Si 1.86799 * 120.00054 * 187.00592 * 7 5 3 10 10 H 1.48498 * 109.47214 * 84.98960 * 9 7 5 11 11 H 1.48498 * 109.47221 * 204.99428 * 9 7 5 12 12 H 1.48504 * 109.47100 * 324.99155 * 9 7 5 13 13 N 1.46908 * 109.47143 * 65.62345 * 3 2 1 14 14 C 1.46897 * 111.00135 * 275.00220 * 13 3 2 15 15 H 1.09003 * 115.55264 * 9.41088 * 14 13 3 16 16 C 1.53001 * 117.49672 * 223.74914 * 14 13 3 17 17 C 1.52993 * 117.49879 * 155.08935 * 14 13 3 18 18 H 1.09001 * 117.49743 * 214.97271 * 17 14 13 19 19 C 1.53004 * 117.50202 * 359.97438 * 17 14 13 20 20 H 1.09008 * 115.54169 * 34.33391 * 19 17 14 21 21 C 1.52994 * 117.50189 * 248.62416 * 19 17 14 22 22 C 1.52993 * 117.50202 * 179.97438 * 19 17 14 23 23 H 1.09006 * 117.50086 * 215.00574 * 22 19 17 24 24 C 1.53010 * 117.49781 * 0.02562 * 22 19 17 25 25 H 1.09004 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47754 * 299.99965 * 1 2 3 27 27 H 1.09002 * 109.47264 * 60.00429 * 1 2 3 28 28 H 1.08999 * 109.46760 * 119.99544 * 2 1 3 29 29 H 1.08995 * 109.47272 * 240.00021 * 2 1 3 30 30 H 0.96994 * 120.00245 * 180.02562 * 8 7 5 31 31 H 1.00907 * 110.99867 * 151.04361 * 13 3 2 32 32 H 1.08998 * 117.49930 * 359.97438 * 16 14 13 33 33 H 1.08995 * 117.50022 * 144.99409 * 16 14 13 34 34 H 1.08999 * 117.49531 * 0.02562 * 21 19 17 35 35 H 1.09004 * 117.49812 * 145.01744 * 21 19 17 36 36 H 1.08998 * 109.46445 * 60.00054 * 24 22 19 37 37 H 1.08998 * 109.46577 * 179.97438 * 24 22 19 38 38 H 1.08992 * 109.47211 * 299.99992 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1392 6 1 4.1571 1.8118 0.6679 7 6 4.1261 0.9786 -1.2970 8 7 3.3776 0.6613 -2.3309 9 14 5.9825 0.7975 -1.3974 10 1 6.3828 -0.5169 -0.8342 11 1 6.4119 0.8795 -2.8166 12 1 6.6288 1.8861 -0.6210 13 7 1.6642 2.0947 1.2616 14 6 0.3032 2.6424 1.1861 15 1 -0.2707 2.3559 0.3049 16 6 0.0736 4.0447 1.7534 17 6 -0.4607 2.8197 2.4998 18 1 -1.5374 2.6502 2.4827 19 6 0.2510 2.4126 3.7915 20 1 1.3277 2.5823 3.8085 21 6 -0.2835 1.1881 4.5369 22 6 -0.5127 2.5905 5.1052 23 1 0.0615 2.8768 5.9865 24 6 -1.9301 3.1614 5.0267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.7896 0.3329 -3.1453 31 1 2.3293 2.8117 1.5101 32 1 0.9322 4.5607 2.1829 33 1 -0.6514 4.6806 1.2454 34 1 -1.1420 0.6723 4.1068 35 1 0.4415 0.5517 5.0444 36 1 -2.5526 2.5056 4.4181 37 1 -2.3495 3.2317 6.0303 38 1 -1.8978 4.1532 4.5757 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716650397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 34.130907 kcal Electronic energy + Delta-G solvation = -15688.979218 eV Core-core repulsion = 13339.346090 eV Total energy + Delta-G solvation = -2349.633128 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.68300 -36.43949 -34.29914 -31.75718 -29.84272 -28.33835 -26.27520 -23.24336 -22.81337 -21.36936 -20.46526 -19.61632 -18.34501 -16.58844 -15.59377 -15.12736 -14.55993 -14.07417 -13.51727 -13.06940 -12.96257 -12.51695 -12.34443 -12.24729 -11.97253 -11.66261 -11.29673 -11.24162 -10.96013 -10.74697 -10.69790 -10.56225 -10.26581 -10.04438 -9.79953 -9.61221 -9.29973 -8.93460 -8.78491 -8.38412 -7.08373 -6.04838 -4.08094 3.30759 3.36970 3.39429 3.90806 4.40685 4.55178 4.89565 5.03015 5.13615 5.24891 5.28941 5.42899 5.64038 5.67091 5.77011 5.87184 5.98375 6.01473 6.09622 6.13670 6.18490 6.32993 6.34955 6.46633 6.50337 6.54777 6.61041 6.75728 7.05339 7.16836 7.36887 7.54401 7.79716 7.88299 8.20994 8.39820 8.68423 9.03436 9.57166 11.03700 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038770 B = 0.006498 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.036665 B = 4307.740784 C = 4453.495461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C 0.218 3.782 4 H 0.010 0.990 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.651 5.651 14 C 0.050 3.950 15 H 0.105 0.895 16 C -0.212 4.212 17 C -0.125 4.125 18 H 0.093 0.907 19 C -0.085 4.085 20 H 0.106 0.894 21 C -0.169 4.169 22 C -0.170 4.170 23 H 0.095 0.905 24 C -0.116 4.116 25 H 0.028 0.972 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.261 0.739 31 H 0.333 0.667 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 3.530 9.633 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C 0.111 3.889 4 H 0.027 0.973 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.280 5.280 14 C -0.062 4.062 15 H 0.123 0.877 16 C -0.251 4.251 17 C -0.145 4.145 18 H 0.111 0.889 19 C -0.104 4.104 20 H 0.124 0.876 21 C -0.206 4.206 22 C -0.188 4.188 23 H 0.114 0.886 24 C -0.173 4.173 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.102 2.855 9.714 12.967 hybrid contribution 1.121 0.562 -0.683 1.428 sum -6.981 3.417 9.031 11.915 Atomic orbital electron populations 1.22005 0.99518 0.99081 1.00271 1.21425 0.91736 0.99605 1.00928 1.19144 0.94613 0.90871 0.84301 0.97261 1.21231 0.91263 1.42614 1.00905 0.92280 1.24905 0.98094 0.95403 0.95349 1.69959 1.35126 1.44358 1.03160 0.86597 0.85667 0.78657 0.76966 1.20535 1.21383 1.20017 1.60396 0.99463 1.31813 1.36333 1.22704 0.94274 0.94187 0.94994 0.87709 1.23485 1.03640 0.92147 1.05844 1.21946 0.97525 1.02233 0.92752 0.88875 1.21529 0.98445 1.00818 0.89561 0.87578 1.22965 1.03196 0.90539 1.03914 1.22395 0.97903 1.00454 0.98063 0.88638 1.21279 0.94419 1.00694 1.00901 0.95322 0.92693 0.94456 0.94111 0.91001 0.92917 0.84822 0.89200 0.89753 0.89317 0.89312 0.92806 0.93059 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.59 37.16 0.32 -2.76 16 2 C -0.10 -2.36 5.50 -26.73 -0.15 -2.50 16 3 C 0.22 5.39 2.06 -68.86 -0.14 5.25 16 4 H 0.01 0.26 7.71 -51.93 -0.40 -0.14 16 5 C -0.52 -14.13 8.50 -34.44 -0.29 -14.42 16 6 H 0.06 1.59 7.68 -52.49 -0.40 1.18 16 7 C 0.06 1.78 5.19 -17.82 -0.09 1.69 16 8 N -0.89 -25.32 12.02 55.43 0.67 -24.66 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 N -0.65 -13.52 5.73 -100.95 -0.58 -14.10 16 14 C 0.05 0.90 4.08 -67.72 -0.28 0.63 16 15 H 0.11 1.98 6.08 -51.93 -0.32 1.66 16 16 C -0.21 -3.23 9.96 -26.69 -0.27 -3.50 16 17 C -0.12 -1.90 5.17 -90.58 -0.47 -2.36 16 18 H 0.09 1.33 7.19 -51.93 -0.37 0.96 16 19 C -0.09 -1.26 5.41 -90.62 -0.49 -1.75 16 20 H 0.11 1.71 7.87 -51.92 -0.41 1.30 16 21 C -0.17 -2.32 9.90 -26.71 -0.26 -2.58 16 22 C -0.17 -2.12 6.41 -90.60 -0.58 -2.70 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 24 C -0.12 -1.27 9.05 37.16 0.34 -0.93 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.06 5.75 -51.93 -0.30 0.76 16 27 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.91 6.66 -51.93 -0.35 1.57 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 31 H 0.33 6.89 8.04 -39.29 -0.32 6.58 16 32 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -27.23 302.18 -9.33 -36.56 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.59 Total: 7.41 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.36 Total: -25.95 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.09 Total: -38.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.23 -9.33 -36.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716650397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.695 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds