Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09001 * 109.47027 * 305.62814 * 3 2 1 5 5 C 1.50700 * 109.47043 * 185.62327 * 3 2 1 6 6 H 1.07997 * 120.00276 * 245.08390 * 5 3 2 7 7 C 1.37870 * 119.99798 * 65.08697 * 5 3 2 8 8 N 1.31522 * 120.00288 * 7.00471 * 7 5 3 9 9 Si 1.86799 * 120.00054 * 187.00592 * 7 5 3 10 10 H 1.48498 * 109.47214 * 84.98960 * 9 7 5 11 11 H 1.48498 * 109.47221 * 204.99428 * 9 7 5 12 12 H 1.48504 * 109.47100 * 324.99155 * 9 7 5 13 13 N 1.46908 * 109.47143 * 65.62345 * 3 2 1 14 14 C 1.46897 * 111.00135 * 275.00220 * 13 3 2 15 15 H 1.09003 * 115.55264 * 9.41088 * 14 13 3 16 16 C 1.53001 * 117.49672 * 223.74914 * 14 13 3 17 17 C 1.52993 * 117.49879 * 155.08935 * 14 13 3 18 18 H 1.09001 * 117.49743 * 214.97271 * 17 14 13 19 19 C 1.53004 * 117.50202 * 359.97438 * 17 14 13 20 20 H 1.09008 * 115.54169 * 34.33391 * 19 17 14 21 21 C 1.52994 * 117.50189 * 248.62416 * 19 17 14 22 22 C 1.52993 * 117.50202 * 179.97438 * 19 17 14 23 23 H 1.09006 * 117.50086 * 215.00574 * 22 19 17 24 24 C 1.53010 * 117.49781 * 0.02562 * 22 19 17 25 25 H 1.09004 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47754 * 299.99965 * 1 2 3 27 27 H 1.09002 * 109.47264 * 60.00429 * 1 2 3 28 28 H 1.08999 * 109.46760 * 119.99544 * 2 1 3 29 29 H 1.08995 * 109.47272 * 240.00021 * 2 1 3 30 30 H 0.96994 * 120.00245 * 180.02562 * 8 7 5 31 31 H 1.00907 * 110.99867 * 151.04361 * 13 3 2 32 32 H 1.08998 * 117.49930 * 359.97438 * 16 14 13 33 33 H 1.08995 * 117.50022 * 144.99409 * 16 14 13 34 34 H 1.08999 * 117.49531 * 0.02562 * 21 19 17 35 35 H 1.09004 * 117.49812 * 145.01744 * 21 19 17 36 36 H 1.08998 * 109.46445 * 60.00054 * 24 22 19 37 37 H 1.08998 * 109.46577 * 179.97438 * 24 22 19 38 38 H 1.08992 * 109.47211 * 299.99992 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1392 6 1 4.1571 1.8118 0.6679 7 6 4.1261 0.9786 -1.2970 8 7 3.3776 0.6613 -2.3309 9 14 5.9825 0.7975 -1.3974 10 1 6.3828 -0.5169 -0.8342 11 1 6.4119 0.8795 -2.8166 12 1 6.6288 1.8861 -0.6210 13 7 1.6642 2.0947 1.2616 14 6 0.3032 2.6424 1.1861 15 1 -0.2707 2.3559 0.3049 16 6 0.0736 4.0447 1.7534 17 6 -0.4607 2.8197 2.4998 18 1 -1.5374 2.6502 2.4827 19 6 0.2510 2.4126 3.7915 20 1 1.3277 2.5823 3.8085 21 6 -0.2835 1.1881 4.5369 22 6 -0.5127 2.5905 5.1052 23 1 0.0615 2.8768 5.9865 24 6 -1.9301 3.1614 5.0267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.7896 0.3329 -3.1453 31 1 2.3293 2.8117 1.5101 32 1 0.9322 4.5607 2.1829 33 1 -0.6514 4.6806 1.2454 34 1 -1.1420 0.6723 4.1068 35 1 0.4415 0.5517 5.0444 36 1 -2.5526 2.5056 4.4181 37 1 -2.3495 3.2317 6.0303 38 1 -1.8978 4.1532 4.5757 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716650397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 19.741358 kcal Electronic energy + Delta-G solvation = -15689.603196 eV Core-core repulsion = 13339.346090 eV Total energy + Delta-G solvation = -2350.257106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95678 -37.89638 -35.92007 -33.74822 -31.55322 -29.24871 -28.22841 -24.78422 -24.36543 -22.60904 -21.71213 -21.46858 -19.58964 -18.51133 -17.09827 -16.61807 -16.11960 -15.79235 -15.07958 -14.41834 -14.16973 -14.10882 -13.83986 -13.62397 -13.23003 -13.18909 -13.15717 -12.76443 -12.51291 -12.25822 -12.15133 -12.00734 -11.79057 -11.68327 -11.54812 -11.18116 -10.84339 -10.61629 -10.44977 -10.06817 -8.73096 -8.15228 -6.25427 1.41088 1.42920 1.51559 2.41556 2.74091 3.15775 3.35138 3.58912 3.77782 4.01715 4.07156 4.41280 4.45161 4.50635 4.54299 4.61058 4.65765 4.67562 4.78193 4.93010 5.01660 5.02831 5.07338 5.08760 5.18262 5.27887 5.32497 5.37311 5.48662 5.52716 5.58765 5.64654 5.70609 5.88041 6.22663 6.52120 6.84703 7.03525 7.44427 8.92864 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038770 B = 0.006498 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.036665 B = 4307.740784 C = 4453.495461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C 0.227 3.773 4 H -0.027 1.027 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.645 5.645 14 C 0.016 3.984 15 H 0.093 0.907 16 C -0.196 4.196 17 C -0.100 4.100 18 H 0.109 0.891 19 C -0.109 4.109 20 H 0.088 0.912 21 C -0.174 4.174 22 C -0.148 4.148 23 H 0.106 0.894 24 C -0.116 4.116 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 4.056 11.179 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C 0.118 3.882 4 H -0.010 1.010 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.274 5.274 14 C -0.095 4.095 15 H 0.111 0.889 16 C -0.235 4.235 17 C -0.120 4.120 18 H 0.127 0.873 19 C -0.127 4.127 20 H 0.106 0.894 21 C -0.211 4.211 22 C -0.166 4.166 23 H 0.124 0.876 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.856 3.391 11.279 14.736 hybrid contribution 1.318 0.433 -1.132 1.791 sum -7.538 3.824 10.147 13.206 Atomic orbital electron populations 1.21852 0.96584 1.00408 1.00674 1.21256 0.94351 0.98587 0.98871 1.18886 0.93326 0.91223 0.84754 1.00958 1.21591 0.92742 1.42550 1.00934 0.92532 1.25680 1.02473 0.95087 0.95026 1.70080 1.36893 1.45072 1.03600 0.85591 0.80406 0.78723 0.77024 1.20141 1.21014 1.19263 1.60344 1.00901 1.32257 1.33879 1.22675 0.92951 0.97242 0.96638 0.88909 1.23522 1.03921 0.91301 1.04769 1.21950 0.97844 1.00941 0.91243 0.87300 1.21487 0.97825 1.02718 0.90699 0.89405 1.23025 1.03216 0.90973 1.03920 1.22486 0.98482 0.98963 0.96667 0.87640 1.21318 0.93235 1.00630 1.02142 0.93467 0.91405 0.94883 0.94837 0.94151 0.92921 0.85213 0.89102 0.87902 0.89051 0.89368 0.92717 0.91302 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.59 71.98 0.62 -4.95 16 2 C -0.09 -4.50 5.50 30.59 0.17 -4.33 16 3 C 0.23 11.53 2.06 44.17 0.09 11.62 16 4 H -0.03 -1.56 7.71 -2.39 -0.02 -1.58 16 5 C -0.54 -29.89 8.50 25.60 0.22 -29.68 16 6 H 0.06 3.08 7.68 -2.91 -0.02 3.06 16 7 C 0.02 0.94 5.19 84.65 0.44 1.38 16 8 N -0.92 -53.62 12.02 21.45 0.26 -53.36 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.65 -27.17 5.73 -473.30 -2.71 -29.88 16 14 C 0.02 0.57 4.08 44.91 0.18 0.76 16 15 H 0.09 3.52 6.08 -2.39 -0.01 3.50 16 16 C -0.20 -5.66 9.96 30.62 0.30 -5.35 16 17 C -0.10 -2.85 5.17 -10.77 -0.06 -2.91 16 18 H 0.11 2.78 7.19 -2.39 -0.02 2.77 16 19 C -0.11 -3.04 5.41 -10.80 -0.06 -3.10 16 20 H 0.09 2.78 7.87 -2.38 -0.02 2.76 16 21 C -0.17 -4.44 9.90 30.61 0.30 -4.14 16 22 C -0.15 -3.28 6.41 -10.78 -0.07 -3.35 16 23 H 0.11 2.15 8.14 -2.38 -0.02 2.14 16 24 C -0.12 -2.14 9.05 71.99 0.65 -1.49 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.55 5.75 -2.39 -0.01 2.53 16 27 H 0.03 1.33 7.95 -2.39 -0.02 1.31 16 28 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 2.21 6.66 -2.39 -0.02 2.19 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.33 13.90 8.04 -89.69 -0.72 13.18 16 32 H 0.09 2.62 8.09 -2.39 -0.02 2.60 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.09 2.27 8.05 -2.39 -0.02 2.25 16 35 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.05 1.01 7.40 -2.39 -0.02 0.99 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -58.82 302.18 2.67 -56.15 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.30 Total: 26.69 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 2.79 Total: -45.54 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.45 Total: -83.24 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.82 2.67 -56.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716650397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -58.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds