Wall clock time and date at job start Mon Mar 30 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 H 1.09004 * 109.47142 * 304.25475 * 3 2 1 5 5 C 1.50703 * 109.46986 * 184.25749 * 3 2 1 6 6 H 1.07998 * 120.00190 * 239.99756 * 5 3 2 7 7 C 1.37880 * 120.00033 * 59.99893 * 5 3 2 8 8 N 1.31516 * 119.99765 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46941 * 90.00246 * 9 7 5 11 11 H 1.48501 * 109.47417 * 209.99999 * 9 7 5 12 12 H 1.48497 * 109.47350 * 330.00321 * 9 7 5 13 13 N 1.46900 * 109.47261 * 64.25717 * 3 2 1 14 14 C 1.46900 * 110.99978 * 223.61298 * 13 3 2 15 15 C 1.53001 * 112.84990 * 185.04171 * 14 13 3 16 16 C 1.53009 * 117.49714 * 18.29174 * 15 14 13 17 17 C 1.53000 * 117.49720 * 309.67289 * 15 14 13 18 18 C 1.53777 * 113.61394 * 53.84830 * 14 13 3 19 19 C 1.53956 * 87.02029 * 220.04502 * 18 14 13 20 20 C 1.53779 * 113.61428 * 316.24013 * 14 13 3 21 21 H 1.09004 * 109.47044 * 304.55665 * 1 2 3 22 22 H 1.09001 * 109.47609 * 64.55457 * 1 2 3 23 23 H 1.09001 * 109.47527 * 184.55716 * 1 2 3 24 24 H 1.09002 * 109.46768 * 240.00272 * 2 1 3 25 25 H 1.08998 * 109.47458 * 120.00118 * 2 1 3 26 26 H 0.97001 * 119.99415 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00024 * 99.66038 * 13 3 2 28 28 H 1.08997 * 115.54893 * 163.99781 * 15 14 13 29 29 H 1.08994 * 117.49593 * 0.02562 * 16 15 14 30 30 H 1.08997 * 117.49624 * 145.01922 * 16 15 14 31 31 H 1.09004 * 117.49356 * 214.97484 * 17 15 14 32 32 H 1.08997 * 117.50444 * 359.97438 * 17 15 14 33 33 H 1.09002 * 113.61771 * 334.56876 * 18 14 13 34 34 H 1.08997 * 113.61492 * 105.46942 * 18 14 13 35 35 H 1.08998 * 113.54032 * 270.81209 * 19 18 14 36 36 H 1.09005 * 113.66600 * 139.93122 * 19 18 14 37 37 H 1.08998 * 113.61644 * 254.52431 * 20 14 13 38 38 H 1.08994 * 113.61545 * 25.43283 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1055 6 1 4.1391 1.8917 0.6760 7 6 4.1581 0.8731 -1.1997 8 7 3.4325 0.3281 -2.1517 9 14 6.0214 0.8753 -1.3308 10 1 6.5637 -0.3535 -0.6972 11 1 6.4170 0.9102 -2.7617 12 1 6.5650 2.0708 -0.6377 13 7 1.6360 2.1047 1.2475 14 6 1.1355 3.4607 0.9856 15 6 0.8178 4.2345 2.2666 16 6 1.4338 3.7246 3.5711 17 6 -0.0627 3.5432 3.3096 18 6 0.0084 3.5101 -0.0594 19 6 0.6775 4.7856 -0.6030 20 6 1.9944 4.2518 -0.0151 21 1 -0.3633 0.5829 0.8464 22 1 -0.3634 0.4415 -0.9280 23 1 -0.3634 -1.0244 0.0817 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8651 -0.0738 -2.9213 27 1 2.3965 2.1217 1.9105 28 1 0.7073 5.3125 2.1495 29 1 2.0657 2.8382 3.5165 30 1 1.7288 4.4673 4.3124 31 1 -0.7522 4.1666 3.8789 32 1 -0.4160 2.5373 3.0829 33 1 0.0257 2.6753 -0.7601 34 1 -0.9783 3.6828 0.3704 35 1 0.3248 5.6997 -0.1253 36 1 0.6792 4.8491 -1.6912 37 1 2.6087 5.0225 0.4505 38 1 2.5557 3.6202 -0.7036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717863237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:00 Heat of formation + Delta-G solvation = 40.609556 kcal Electronic energy + Delta-G solvation = -16498.056245 eV Core-core repulsion = 14148.704053 eV Total energy + Delta-G solvation = -2349.352193 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59112 -35.63880 -34.58399 -31.77008 -30.18691 -26.52882 -24.90796 -24.04672 -22.54315 -21.87759 -21.24193 -19.47905 -17.10985 -16.76796 -15.59478 -15.18691 -14.62615 -14.04412 -13.66113 -13.12303 -12.79219 -12.26852 -12.16482 -11.65568 -11.50535 -11.25643 -11.05878 -11.02862 -10.89442 -10.66875 -10.42529 -10.24660 -9.99623 -9.83902 -9.66285 -9.56068 -9.41625 -9.16863 -8.80775 -8.32548 -7.11140 -5.99379 -4.09607 3.27546 3.34960 3.37553 4.19335 4.40249 5.04970 5.19118 5.27138 5.29066 5.41547 5.47486 5.50947 5.70119 5.92868 5.99075 6.07830 6.23697 6.37284 6.42453 6.49675 6.56634 6.58784 6.60987 6.61689 6.76110 6.79507 6.93447 7.18261 7.20843 7.29849 7.55061 7.63890 7.80895 8.13542 8.21709 8.42340 8.75141 9.05624 9.56754 11.01766 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.009840 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.140037 B = 2844.987636 C = 3037.795404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.211 3.789 4 H 0.040 0.960 5 C -0.535 4.535 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.131 3.869 15 C -0.126 4.126 16 C -0.179 4.179 17 C -0.168 4.168 18 C -0.125 4.125 19 C -0.145 4.145 20 C -0.170 4.170 21 H 0.050 0.950 22 H 0.033 0.967 23 H 0.023 0.977 24 H 0.087 0.913 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 5.986 5.691 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.057 0.943 5 C -0.574 4.574 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.304 5.304 14 C 0.039 3.961 15 C -0.144 4.144 16 C -0.216 4.216 17 C -0.205 4.205 18 C -0.163 4.163 19 C -0.183 4.183 20 C -0.209 4.209 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.105 0.895 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.833 5.583 5.526 9.784 hybrid contribution 1.951 0.487 -0.357 2.043 sum -3.881 6.070 5.169 8.868 Atomic orbital electron populations 1.21743 0.99308 0.98415 1.00130 1.21513 0.91840 0.99597 1.01435 1.19232 0.92841 0.90924 0.86659 0.94254 1.21790 0.92399 1.37590 1.05614 0.92854 1.24912 0.97774 0.95121 0.95770 1.69882 1.34753 1.38115 1.09551 0.86684 0.86317 0.78382 0.77137 1.20728 1.21306 1.20071 1.60768 1.39832 1.14607 1.15235 1.21452 0.95277 0.89013 0.90380 1.21979 1.05034 0.97775 0.89629 1.22896 0.96593 1.03399 0.98752 1.22807 0.92907 1.02470 1.02345 1.23178 0.96937 0.97831 0.98318 1.22770 0.98506 0.97211 0.99795 1.23847 0.96308 1.00160 1.00560 0.93107 0.94755 0.95806 0.89456 0.95188 0.92957 0.85168 0.88536 0.88062 0.89930 0.90115 0.88025 0.89033 0.92615 0.91547 0.92269 0.93267 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.42 37.16 0.35 -2.50 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.21 4.99 1.04 -68.87 -0.07 4.92 16 4 H 0.04 1.02 4.65 -51.93 -0.24 0.77 16 5 C -0.53 -13.96 7.37 -34.44 -0.25 -14.21 16 6 H 0.05 1.40 7.47 -52.49 -0.39 1.01 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.54 11.30 55.43 0.63 -23.91 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.69 5.24 -93.43 -0.49 -14.18 16 14 C 0.13 2.37 1.43 -130.79 -0.19 2.18 16 15 C -0.13 -1.94 5.16 -90.61 -0.47 -2.41 16 16 C -0.18 -2.59 9.85 -26.73 -0.26 -2.85 16 17 C -0.17 -2.39 10.10 -26.73 -0.27 -2.66 16 18 C -0.12 -2.22 7.02 -25.83 -0.18 -2.40 16 19 C -0.14 -2.41 7.80 -25.82 -0.20 -2.61 16 20 C -0.17 -3.23 6.85 -25.92 -0.18 -3.40 16 21 H 0.05 1.01 7.61 -51.93 -0.39 0.61 16 22 H 0.03 0.70 7.75 -51.93 -0.40 0.29 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 2.32 5.97 -51.93 -0.31 2.01 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.33 6.82 5.97 -39.29 -0.23 6.58 16 28 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 29 H 0.10 1.58 6.24 -51.93 -0.32 1.26 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.09 1.83 5.40 -51.93 -0.28 1.55 16 34 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.11 2.56 5.36 -51.93 -0.28 2.28 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -26.03 289.77 -8.67 -34.71 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.19 Total: 9.97 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -1.96 Total: -26.89 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.14 Total: -38.09 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.03 -8.67 -34.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717863237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.316 kcal (2) G-P(sol) polarization free energy of solvation -26.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds