Wall clock time and date at job start Mon Mar 30 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 H 1.09004 * 109.47142 * 304.25475 * 3 2 1 5 5 C 1.50703 * 109.46986 * 184.25749 * 3 2 1 6 6 H 1.07998 * 120.00190 * 239.99756 * 5 3 2 7 7 C 1.37880 * 120.00033 * 59.99893 * 5 3 2 8 8 N 1.31516 * 119.99765 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46941 * 90.00246 * 9 7 5 11 11 H 1.48501 * 109.47417 * 209.99999 * 9 7 5 12 12 H 1.48497 * 109.47350 * 330.00321 * 9 7 5 13 13 N 1.46900 * 109.47261 * 64.25717 * 3 2 1 14 14 C 1.46900 * 110.99978 * 223.61298 * 13 3 2 15 15 C 1.53001 * 112.84990 * 185.04171 * 14 13 3 16 16 C 1.53009 * 117.49714 * 18.29174 * 15 14 13 17 17 C 1.53000 * 117.49720 * 309.67289 * 15 14 13 18 18 C 1.53777 * 113.61394 * 53.84830 * 14 13 3 19 19 C 1.53956 * 87.02029 * 220.04502 * 18 14 13 20 20 C 1.53779 * 113.61428 * 316.24013 * 14 13 3 21 21 H 1.09004 * 109.47044 * 304.55665 * 1 2 3 22 22 H 1.09001 * 109.47609 * 64.55457 * 1 2 3 23 23 H 1.09001 * 109.47527 * 184.55716 * 1 2 3 24 24 H 1.09002 * 109.46768 * 240.00272 * 2 1 3 25 25 H 1.08998 * 109.47458 * 120.00118 * 2 1 3 26 26 H 0.97001 * 119.99415 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00024 * 99.66038 * 13 3 2 28 28 H 1.08997 * 115.54893 * 163.99781 * 15 14 13 29 29 H 1.08994 * 117.49593 * 0.02562 * 16 15 14 30 30 H 1.08997 * 117.49624 * 145.01922 * 16 15 14 31 31 H 1.09004 * 117.49356 * 214.97484 * 17 15 14 32 32 H 1.08997 * 117.50444 * 359.97438 * 17 15 14 33 33 H 1.09002 * 113.61771 * 334.56876 * 18 14 13 34 34 H 1.08997 * 113.61492 * 105.46942 * 18 14 13 35 35 H 1.08998 * 113.54032 * 270.81209 * 19 18 14 36 36 H 1.09005 * 113.66600 * 139.93122 * 19 18 14 37 37 H 1.08998 * 113.61644 * 254.52431 * 20 14 13 38 38 H 1.08994 * 113.61545 * 25.43283 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1055 6 1 4.1391 1.8917 0.6760 7 6 4.1581 0.8731 -1.1997 8 7 3.4325 0.3281 -2.1517 9 14 6.0214 0.8753 -1.3308 10 1 6.5637 -0.3535 -0.6972 11 1 6.4170 0.9102 -2.7617 12 1 6.5650 2.0708 -0.6377 13 7 1.6360 2.1047 1.2475 14 6 1.1355 3.4607 0.9856 15 6 0.8178 4.2345 2.2666 16 6 1.4338 3.7246 3.5711 17 6 -0.0627 3.5432 3.3096 18 6 0.0084 3.5101 -0.0594 19 6 0.6775 4.7856 -0.6030 20 6 1.9944 4.2518 -0.0151 21 1 -0.3633 0.5829 0.8464 22 1 -0.3634 0.4415 -0.9280 23 1 -0.3634 -1.0244 0.0817 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8651 -0.0738 -2.9213 27 1 2.3965 2.1217 1.9105 28 1 0.7073 5.3125 2.1495 29 1 2.0657 2.8382 3.5165 30 1 1.7288 4.4673 4.3124 31 1 -0.7522 4.1666 3.8789 32 1 -0.4160 2.5373 3.0829 33 1 0.0257 2.6753 -0.7601 34 1 -0.9783 3.6828 0.3704 35 1 0.3248 5.6997 -0.1253 36 1 0.6792 4.8491 -1.6912 37 1 2.6087 5.0225 0.4505 38 1 2.5557 3.6202 -0.7036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717863237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:00 Heat of formation + Delta-G solvation = 27.186743 kcal Electronic energy + Delta-G solvation = -16498.638302 eV Core-core repulsion = 14148.704053 eV Total energy + Delta-G solvation = -2349.934249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04543 -37.05416 -36.22732 -33.75105 -31.89292 -28.40386 -26.38779 -25.61611 -24.30785 -23.03550 -22.61666 -21.22341 -18.73591 -18.57602 -17.06197 -16.79337 -16.39791 -15.45147 -15.33767 -14.66710 -14.47119 -13.95681 -13.65796 -13.25224 -13.19432 -13.07231 -12.83716 -12.60481 -12.47628 -12.23772 -12.08045 -11.69287 -11.51012 -11.39124 -11.27318 -11.19848 -11.02483 -10.65533 -10.57428 -10.32155 -8.83470 -8.03117 -6.20848 1.37233 1.39572 1.47451 2.41322 3.02334 3.17928 3.67084 3.81714 3.95526 4.01556 4.16209 4.29021 4.42440 4.57116 4.68171 4.75765 4.79877 4.88213 4.95377 4.99126 5.08662 5.14306 5.15050 5.24986 5.29169 5.39918 5.44286 5.47206 5.49860 5.59833 5.72776 5.75712 5.84632 6.17193 6.29567 6.52405 6.94157 7.13967 7.48785 8.94567 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.009840 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.140037 B = 2844.987636 C = 3037.795404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.018 0.982 5 C -0.542 4.542 6 H 0.047 0.953 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.130 3.870 15 C -0.134 4.134 16 C -0.179 4.179 17 C -0.156 4.156 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.177 4.177 21 H 0.058 0.942 22 H 0.030 0.970 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.021 0.979 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 7.379 7.120 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.036 0.964 5 C -0.581 4.581 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.297 5.297 14 C 0.038 3.962 15 C -0.153 4.153 16 C -0.216 4.216 17 C -0.193 4.193 18 C -0.163 4.163 19 C -0.167 4.167 20 C -0.217 4.217 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.549 6.982 6.965 11.839 hybrid contribution 2.171 0.062 -0.790 2.311 sum -4.378 7.045 6.175 10.341 Atomic orbital electron populations 1.21575 0.96687 0.99649 1.00228 1.21396 0.94174 0.99223 0.99413 1.18952 0.91400 0.90911 0.87349 0.96449 1.22066 0.93868 1.36897 1.05249 0.93512 1.25577 1.01519 0.95144 0.95703 1.70007 1.36092 1.38962 1.09948 0.85782 0.81877 0.78321 0.76973 1.20434 1.21188 1.19748 1.60706 1.39213 1.16325 1.13432 1.21622 0.94814 0.87832 0.91922 1.21956 1.06507 0.98377 0.88428 1.22938 0.96748 1.03256 0.98631 1.22828 0.93112 1.01893 1.01439 1.23095 0.97924 0.97485 0.97788 1.22741 0.96304 0.97829 0.99810 1.23714 0.97252 1.00151 1.00546 0.92299 0.95133 0.94070 0.92477 0.96053 0.93132 0.85487 0.86600 0.89816 0.87614 0.87377 0.89642 0.91948 0.90673 0.88396 0.92596 0.92481 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.42 71.98 0.68 -4.39 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.22 10.79 1.04 44.17 0.05 10.84 16 4 H 0.02 0.95 4.65 -2.38 -0.01 0.93 16 5 C -0.54 -28.96 7.37 25.60 0.19 -28.77 16 6 H 0.05 2.50 7.47 -2.91 -0.02 2.48 16 7 C 0.02 1.10 5.29 84.66 0.45 1.55 16 8 N -0.91 -51.99 11.30 21.45 0.24 -51.75 16 9 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.67 -27.12 5.24 -449.52 -2.36 -29.48 16 14 C 0.13 4.57 1.43 4.05 0.01 4.57 16 15 C -0.13 -3.76 5.16 -10.79 -0.06 -3.81 16 16 C -0.18 -4.68 9.85 30.60 0.30 -4.38 16 17 C -0.16 -3.92 10.10 30.59 0.31 -3.61 16 18 C -0.13 -4.30 7.02 31.18 0.22 -4.08 16 19 C -0.13 -4.07 7.80 31.18 0.24 -3.83 16 20 C -0.18 -6.68 6.85 31.12 0.21 -6.47 16 21 H 0.06 2.29 7.61 -2.39 -0.02 2.27 16 22 H 0.03 1.24 7.75 -2.39 -0.02 1.22 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 3.13 5.97 -2.39 -0.01 3.12 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 27 H 0.33 13.57 5.97 -89.69 -0.54 13.03 16 28 H 0.12 2.85 7.90 -2.39 -0.02 2.83 16 29 H 0.08 2.51 6.24 -2.39 -0.01 2.49 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.52 5.40 -2.39 -0.01 2.51 16 34 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 35 H 0.10 2.50 7.94 -2.39 -0.02 2.49 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.07 3.22 5.36 -2.39 -0.01 3.21 16 Total: -1.00 -56.58 289.77 3.17 -53.41 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.50 Total: 29.31 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 2.76 Total: -47.23 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.11 Total: -81.22 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -56.58 3.17 -53.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717863237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.595 kcal (2) G-P(sol) polarization free energy of solvation -56.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds