Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46857 * 2 1 4 4 N 1.46896 * 109.47297 * 120.00171 * 2 1 3 5 5 C 1.46905 * 111.00034 * 165.92099 * 4 2 1 6 6 C 1.50697 * 109.47143 * 293.95580 * 5 4 2 7 7 H 1.08006 * 119.99978 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00057 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99970 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46635 * 89.99987 * 10 8 6 12 12 H 1.48493 * 109.47248 * 210.00110 * 10 8 6 13 13 H 1.48496 * 109.46993 * 330.00522 * 10 8 6 14 14 C 1.46902 * 111.00098 * 289.87477 * 4 2 1 15 15 C 1.52995 * 109.47123 * 162.11726 * 14 4 2 16 16 H 1.09000 * 115.55051 * 285.16909 * 15 14 4 17 17 C 1.53002 * 117.50385 * 70.84244 * 15 14 4 18 18 C 1.52993 * 117.50170 * 139.50386 * 15 14 4 19 19 C 1.52992 * 138.59341 * 121.59158 * 18 15 14 20 20 C 1.52990 * 138.58651 * 23.37023 * 18 15 14 21 21 H 1.08998 * 109.47293 * 301.05279 * 1 2 3 22 22 H 1.08997 * 109.47094 * 61.05882 * 1 2 3 23 23 H 1.08998 * 109.46922 * 181.05564 * 1 2 3 24 24 H 1.08999 * 109.47338 * 240.00444 * 2 1 3 25 25 H 1.08998 * 109.46954 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47407 * 300.00175 * 3 2 1 27 27 H 1.08999 * 109.46784 * 60.00104 * 3 2 1 28 28 H 1.09006 * 109.46934 * 53.95087 * 5 4 2 29 29 H 1.08997 * 109.47331 * 173.95454 * 5 4 2 30 30 H 0.97000 * 119.99717 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.46897 * 42.11048 * 14 4 2 32 32 H 1.09003 * 109.47102 * 282.11326 * 14 4 2 33 33 H 1.09003 * 117.50127 * 215.00270 * 17 15 14 34 34 H 1.09003 * 117.49690 * 359.97438 * 17 15 14 35 35 H 1.09004 * 117.49385 * 336.59705 * 19 18 15 36 36 H 1.08994 * 117.50078 * 121.61824 * 19 18 15 37 37 H 1.09002 * 117.50282 * 238.38666 * 20 18 15 38 38 H 1.08998 * 117.49870 * 23.41502 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4494 -1.0079 1.0783 6 6 3.6500 -2.0152 -0.0243 7 1 2.8003 -2.3846 -0.5795 8 6 4.9180 -2.4662 -0.3239 9 7 5.0930 -3.3457 -1.2859 10 14 6.3875 -1.8278 0.6367 11 1 6.6249 -2.6996 1.8152 12 1 7.5898 -1.8353 -0.2348 13 1 6.1158 -0.4412 1.0935 14 6 1.7556 0.0985 2.4087 15 6 1.8561 -0.8037 3.6403 16 1 1.0170 -1.4816 3.7961 17 6 3.2473 -1.2972 4.0429 18 6 2.5407 -0.2299 4.8824 19 6 2.2114 0.0427 6.3513 20 6 2.8485 1.1382 5.4940 21 1 -0.3634 0.5301 0.8804 22 1 -0.3633 0.4973 -0.8993 23 1 -0.3633 -1.0275 0.0189 24 1 1.8934 -0.5137 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 4.0035 -0.0986 0.8450 29 1 3.8109 -1.4224 2.0193 30 1 5.9852 -3.6626 -1.4968 31 1 0.7545 0.5258 2.3519 32 1 2.4893 0.9010 2.4854 33 1 3.3233 -2.2999 4.4636 34 1 4.0909 -0.9795 3.4301 35 1 1.1611 0.1595 6.6183 36 1 2.8379 -0.4350 7.1046 37 1 3.8940 1.3813 5.6834 38 1 2.2172 1.9757 5.1971 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722887492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = 65.141714 kcal Electronic energy + Delta-G solvation = -15962.175797 eV Core-core repulsion = 13613.887398 eV Total energy + Delta-G solvation = -2348.288398 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83459 -37.02365 -32.89292 -32.61563 -30.46169 -28.14329 -26.64542 -24.84289 -22.36811 -21.85339 -20.78273 -18.91818 -18.33662 -16.63560 -15.51746 -15.17590 -14.89654 -14.21494 -14.14782 -13.68852 -13.08733 -12.93761 -12.46546 -12.35988 -11.66243 -11.64022 -11.47293 -11.18466 -11.17920 -10.89580 -10.66059 -10.51257 -10.36759 -10.05950 -9.83809 -9.71449 -9.49008 -9.39370 -8.98029 -8.48326 -7.24736 -6.01347 -3.96418 3.28823 3.36724 3.38134 3.83994 3.92968 4.44219 4.48025 4.96790 5.06634 5.15246 5.31926 5.55323 5.64142 5.64798 5.69860 5.76455 5.83592 5.91206 5.94171 5.98942 6.07642 6.11241 6.18273 6.19004 6.27295 6.32481 6.34322 6.51520 6.64237 6.74046 6.86952 7.06572 7.14243 7.69922 8.01818 8.17245 8.72988 9.08192 9.61366 11.12121 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.010608 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.100079 B = 2638.921596 C = 3571.434482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 C -0.180 4.180 4 N -0.517 5.517 5 C 0.145 3.855 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.868 3.132 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.080 3.920 15 C -0.077 4.077 16 H 0.104 0.896 17 C -0.124 4.124 18 C -0.236 4.236 19 C -0.133 4.133 20 C -0.134 4.134 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.046 0.954 28 H -0.014 1.014 29 H 0.044 0.956 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 8.703 10.229 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.239 4.239 4 N -0.240 5.240 5 C 0.019 3.981 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.696 3.304 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.048 4.048 15 C -0.095 4.095 16 H 0.122 0.878 17 C -0.160 4.160 18 C -0.237 4.237 19 C -0.170 4.170 20 C -0.171 4.171 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.004 0.996 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.106 8.150 10.163 14.387 hybrid contribution 1.426 1.005 0.384 1.786 sum -4.680 9.154 10.547 14.729 Atomic orbital electron populations 1.21832 0.95935 1.01806 1.00069 1.21650 0.94024 0.91743 0.95638 1.22452 1.01884 0.98854 1.00743 1.62059 1.19981 1.42099 0.99830 1.20583 0.83601 0.95362 0.98546 1.21072 0.94287 1.22648 1.16141 0.90225 1.24875 0.98498 0.94885 0.95064 1.69896 1.22360 1.31351 1.30598 0.86965 0.83051 0.79945 0.80476 1.20064 1.21289 1.19297 1.21591 0.99907 0.93549 0.89781 1.21997 0.96387 0.99883 0.91275 0.87766 1.22986 0.96919 0.96511 0.99601 1.21700 1.09303 0.99202 0.93493 1.22576 1.00899 1.02050 0.91500 1.22549 1.01057 0.91056 1.02454 0.93683 0.93294 0.92114 0.88402 0.92518 0.93072 0.93481 0.99598 0.93826 0.92795 0.91388 0.95445 0.88788 0.87709 0.89033 0.89074 0.89096 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.21 37.16 0.34 -1.84 16 2 C 0.08 1.48 2.76 -67.71 -0.19 1.30 16 3 C -0.18 -3.07 8.45 37.16 0.31 -2.76 16 4 N -0.52 -10.67 4.36 -228.08 -0.99 -11.66 16 5 C 0.14 3.47 3.38 -4.97 -0.02 3.45 16 6 C -0.50 -14.21 8.86 -34.44 -0.31 -14.51 16 7 H 0.08 2.45 7.48 -52.48 -0.39 2.06 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 10 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 14 C 0.08 1.40 3.88 -3.83 -0.01 1.38 16 15 C -0.08 -1.28 5.95 -90.62 -0.54 -1.81 16 16 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 17 C -0.12 -2.12 8.76 -26.69 -0.23 -2.36 16 18 C -0.24 -3.52 5.32 -154.49 -0.82 -4.35 16 19 C -0.13 -1.60 10.53 -26.73 -0.28 -1.88 16 20 C -0.13 -1.70 10.53 -26.74 -0.28 -1.98 16 21 H 0.04 0.65 6.48 -51.93 -0.34 0.31 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.10 2.16 6.60 -51.93 -0.34 1.81 16 25 H 0.06 1.07 6.75 -51.93 -0.35 0.72 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.73 6.63 -51.93 -0.34 0.39 16 28 H -0.01 -0.34 5.68 -51.93 -0.29 -0.63 16 29 H 0.04 1.04 3.28 -51.93 -0.17 0.87 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.07 1.08 6.06 -51.93 -0.31 0.76 16 32 H 0.03 0.50 7.14 -51.93 -0.37 0.12 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.10 2.00 5.95 -51.93 -0.31 1.69 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -29.72 293.28 -8.79 -38.51 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.20 Total: 2.30 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.12 Total: -23.49 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.22 Total: -38.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.72 -8.79 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.653 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds