Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46857 * 2 1 4 4 N 1.46896 * 109.47297 * 120.00171 * 2 1 3 5 5 C 1.46905 * 111.00034 * 165.92099 * 4 2 1 6 6 C 1.50697 * 109.47143 * 293.95580 * 5 4 2 7 7 H 1.08006 * 119.99978 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00057 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99970 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46635 * 89.99987 * 10 8 6 12 12 H 1.48493 * 109.47248 * 210.00110 * 10 8 6 13 13 H 1.48496 * 109.46993 * 330.00522 * 10 8 6 14 14 C 1.46902 * 111.00098 * 289.87477 * 4 2 1 15 15 C 1.52995 * 109.47123 * 162.11726 * 14 4 2 16 16 H 1.09000 * 115.55051 * 285.16909 * 15 14 4 17 17 C 1.53002 * 117.50385 * 70.84244 * 15 14 4 18 18 C 1.52993 * 117.50170 * 139.50386 * 15 14 4 19 19 C 1.52992 * 138.59341 * 121.59158 * 18 15 14 20 20 C 1.52990 * 138.58651 * 23.37023 * 18 15 14 21 21 H 1.08998 * 109.47293 * 301.05279 * 1 2 3 22 22 H 1.08997 * 109.47094 * 61.05882 * 1 2 3 23 23 H 1.08998 * 109.46922 * 181.05564 * 1 2 3 24 24 H 1.08999 * 109.47338 * 240.00444 * 2 1 3 25 25 H 1.08998 * 109.46954 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47407 * 300.00175 * 3 2 1 27 27 H 1.08999 * 109.46784 * 60.00104 * 3 2 1 28 28 H 1.09006 * 109.46934 * 53.95087 * 5 4 2 29 29 H 1.08997 * 109.47331 * 173.95454 * 5 4 2 30 30 H 0.97000 * 119.99717 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.46897 * 42.11048 * 14 4 2 32 32 H 1.09003 * 109.47102 * 282.11326 * 14 4 2 33 33 H 1.09003 * 117.50127 * 215.00270 * 17 15 14 34 34 H 1.09003 * 117.49690 * 359.97438 * 17 15 14 35 35 H 1.09004 * 117.49385 * 336.59705 * 19 18 15 36 36 H 1.08994 * 117.50078 * 121.61824 * 19 18 15 37 37 H 1.09002 * 117.50282 * 238.38666 * 20 18 15 38 38 H 1.08998 * 117.49870 * 23.41502 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4494 -1.0079 1.0783 6 6 3.6500 -2.0152 -0.0243 7 1 2.8003 -2.3846 -0.5795 8 6 4.9180 -2.4662 -0.3239 9 7 5.0930 -3.3457 -1.2859 10 14 6.3875 -1.8278 0.6367 11 1 6.6249 -2.6996 1.8152 12 1 7.5898 -1.8353 -0.2348 13 1 6.1158 -0.4412 1.0935 14 6 1.7556 0.0985 2.4087 15 6 1.8561 -0.8037 3.6403 16 1 1.0170 -1.4816 3.7961 17 6 3.2473 -1.2972 4.0429 18 6 2.5407 -0.2299 4.8824 19 6 2.2114 0.0427 6.3513 20 6 2.8485 1.1382 5.4940 21 1 -0.3634 0.5301 0.8804 22 1 -0.3633 0.4973 -0.8993 23 1 -0.3633 -1.0275 0.0189 24 1 1.8934 -0.5137 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 4.0035 -0.0986 0.8450 29 1 3.8109 -1.4224 2.0193 30 1 5.9852 -3.6626 -1.4968 31 1 0.7545 0.5258 2.3519 32 1 2.4893 0.9010 2.4854 33 1 3.3233 -2.2999 4.4636 34 1 4.0909 -0.9795 3.4301 35 1 1.1611 0.1595 6.6183 36 1 2.8379 -0.4350 7.1046 37 1 3.8940 1.3813 5.6834 38 1 2.2172 1.9757 5.1971 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722887492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = 47.280290 kcal Electronic energy + Delta-G solvation = -15962.950326 eV Core-core repulsion = 13613.887398 eV Total energy + Delta-G solvation = -2349.062928 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20591 -38.35849 -34.83102 -34.03561 -32.09238 -29.88506 -27.99860 -26.53412 -23.72154 -23.22672 -22.26646 -20.25802 -19.68878 -18.79306 -17.11620 -16.47035 -16.07731 -15.87885 -15.70396 -15.15216 -14.76962 -14.54241 -14.20346 -13.78763 -13.35962 -12.96437 -12.79898 -12.54292 -12.42344 -12.34269 -12.30360 -12.08060 -11.98195 -11.82325 -11.43723 -11.27253 -10.83318 -10.78413 -10.66112 -10.44362 -8.88408 -8.26933 -6.26805 1.30878 1.31859 1.42035 2.33053 2.65190 2.83319 3.07338 3.28233 3.60961 3.89947 4.01210 4.14384 4.29713 4.33943 4.55216 4.59773 4.63953 4.71754 4.75359 4.76761 4.81102 4.86961 4.88805 4.92966 5.00123 5.03274 5.08585 5.17890 5.20500 5.28778 5.31915 5.44904 5.52113 5.63841 6.07426 6.50909 6.74616 6.79585 7.35220 8.90123 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.010608 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.100079 B = 2638.921596 C = 3571.434482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.171 4.171 4 N -0.531 5.531 5 C 0.158 3.842 6 C -0.506 4.506 7 H 0.036 0.964 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.937 3.063 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.255 1.255 14 C 0.086 3.914 15 C -0.087 4.087 16 H 0.106 0.894 17 C -0.146 4.146 18 C -0.242 4.242 19 C -0.114 4.114 20 C -0.131 4.131 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.068 0.932 28 H -0.022 1.022 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.090 0.910 32 H 0.024 0.976 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 10.830 12.720 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.037 4.037 3 C -0.230 4.230 4 N -0.255 5.255 5 C 0.031 3.969 6 C -0.545 4.545 7 H 0.054 0.946 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.760 3.240 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.179 1.179 14 C -0.042 4.042 15 C -0.106 4.106 16 H 0.124 0.876 17 C -0.183 4.183 18 C -0.243 4.243 19 C -0.150 4.150 20 C -0.167 4.167 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.087 0.913 28 H -0.004 1.004 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.691 10.291 12.665 17.638 hybrid contribution 1.507 0.327 -0.421 1.598 sum -5.185 10.618 12.244 17.016 Atomic orbital electron populations 1.21737 0.93007 1.01683 1.02151 1.21666 0.96318 0.92356 0.93358 1.22347 1.00204 0.97651 1.02802 1.61988 1.17610 1.44062 1.01803 1.20324 0.86020 0.93597 0.96953 1.21315 0.93104 1.23235 1.16830 0.94566 1.25756 1.01812 0.95121 0.96131 1.70051 1.23273 1.33176 1.32639 0.85870 0.78846 0.80046 0.79196 1.18734 1.20811 1.17902 1.21622 1.00855 0.93206 0.88474 1.21954 0.96011 1.00449 0.92159 0.87561 1.22844 0.96481 0.97687 1.01307 1.21736 1.07177 1.00504 0.94850 1.22777 1.02248 1.00393 0.89625 1.22755 1.01936 0.90582 1.01451 0.91517 0.91199 0.93389 0.92846 0.94991 0.91033 0.91332 1.00429 0.93051 0.92622 0.89164 0.95746 0.88712 0.90068 0.87205 0.87824 0.88502 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.21 71.98 0.66 -3.17 16 2 C 0.07 2.73 2.76 44.92 0.12 2.85 16 3 C -0.17 -5.60 8.45 71.98 0.61 -4.99 16 4 N -0.53 -22.02 4.36 -875.52 -3.82 -25.83 16 5 C 0.16 7.69 3.38 85.56 0.29 7.98 16 6 C -0.51 -29.88 8.86 25.60 0.23 -29.65 16 7 H 0.04 2.39 7.48 -2.91 -0.02 2.36 16 8 C 0.01 0.50 5.47 84.65 0.46 0.97 16 9 N -0.95 -60.54 13.96 21.45 0.30 -60.25 16 10 Si 0.94 45.16 27.47 68.60 1.88 47.04 16 11 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 14 C 0.09 2.85 3.88 86.30 0.33 3.19 16 15 C -0.09 -2.76 5.95 -10.80 -0.06 -2.82 16 16 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 17 C -0.15 -4.92 8.76 30.62 0.27 -4.65 16 18 C -0.24 -6.59 5.32 -52.17 -0.28 -6.86 16 19 C -0.11 -2.27 10.53 30.59 0.32 -1.94 16 20 C -0.13 -2.82 10.53 30.59 0.32 -2.50 16 21 H 0.07 1.70 6.48 -2.39 -0.02 1.69 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.49 6.60 -2.39 -0.02 2.47 16 25 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.93 6.63 -2.39 -0.02 1.92 16 28 H -0.02 -1.09 5.68 -2.38 -0.01 -1.10 16 29 H 0.05 2.46 3.28 -2.39 -0.01 2.45 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.09 2.57 6.06 -2.39 -0.01 2.56 16 32 H 0.02 0.83 7.14 -2.39 -0.02 0.81 16 33 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.08 3.08 5.95 -2.39 -0.01 3.07 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.68 293.28 2.62 -64.07 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.97 Total: 16.58 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 3.28 Total: -41.61 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -3.52 Total: -86.08 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -66.68 2.62 -64.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.346 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds