Wall clock time and date at job start Mon Mar 30 2020 02:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47384 * 2 1
4 4 H 1.08995 * 115.54938 * 330.72350 * 3 2 1
5 5 C 1.53001 * 117.49759 * 116.39104 * 3 2 1
6 6 C 1.52996 * 60.00000 * 107.48991 * 5 3 2
7 7 H 1.09001 * 117.50209 * 107.48968 * 6 5 3
8 8 C 1.53005 * 117.49996 * 252.51237 * 6 5 3
9 9 N 1.46900 * 109.47017 * 243.60662 * 8 6 5
10 10 C 1.46898 * 110.99918 * 189.99688 * 9 8 6
11 11 C 1.50704 * 109.47020 * 161.29291 * 10 9 8
12 12 H 1.08000 * 119.99808 * 354.47024 * 11 10 9
13 13 C 1.37869 * 120.00150 * 174.47318 * 11 10 9
14 14 N 1.31515 * 120.00518 * 180.02562 * 13 11 10
15 15 Si 1.86810 * 119.99874 * 359.97438 * 13 11 10
16 16 H 1.48493 * 109.47048 * 90.00068 * 15 13 11
17 17 H 1.48500 * 109.46998 * 209.99995 * 15 13 11
18 18 H 1.48500 * 109.46780 * 329.99933 * 15 13 11
19 19 C 1.46901 * 110.99879 * 66.04549 * 9 8 6
20 20 C 1.53006 * 117.49998 * 261.10455 * 19 9 8
21 21 C 1.52996 * 59.99898 * 252.51073 * 20 19 9
22 22 H 1.09000 * 109.47754 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.47297 * 300.00300 * 1 2 3
24 24 H 1.09008 * 109.47184 * 59.99769 * 1 2 3
25 25 H 1.08998 * 109.46567 * 239.99564 * 2 1 3
26 26 H 1.09004 * 109.46513 * 120.00475 * 2 1 3
27 27 H 1.09002 * 117.49930 * 214.98129 * 5 3 2
28 28 H 1.09003 * 117.49686 * 359.97438 * 5 3 2
29 29 H 1.09000 * 109.46962 * 3.60569 * 8 6 5
30 30 H 1.09000 * 109.47044 * 123.60503 * 8 6 5
31 31 H 1.09005 * 109.47266 * 281.29030 * 10 9 8
32 32 H 1.08996 * 109.47222 * 41.29241 * 10 9 8
33 33 H 0.96993 * 120.00630 * 180.02562 * 14 13 11
34 34 H 1.09002 * 115.55573 * 46.80868 * 19 9 8
35 35 H 1.09003 * 117.49435 * 0.02562 * 20 19 9
36 36 H 1.09002 * 117.50191 * 145.01706 * 20 19 9
37 37 H 1.09005 * 117.49632 * 252.50737 * 21 20 19
38 38 H 1.09002 * 117.49725 * 107.48980 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.3881 2.1716 -0.4809
5 6 2.8443 1.9073 1.2157
6 6 3.5502 1.6578 -0.1185
7 1 3.8920 2.5287 -0.6778
8 6 4.4346 0.4141 -0.2281
9 7 5.8278 0.8222 -0.4529
10 6 6.6658 -0.3338 -0.7982
11 6 7.9341 0.1442 -1.4571
12 1 8.0622 1.1920 -1.6856
13 6 8.9309 -0.7560 -1.7683
14 7 10.0379 -0.3390 -2.3428
15 14 8.7096 -2.5683 -1.3725
16 1 8.0734 -3.2528 -2.5264
17 1 10.0349 -3.1814 -1.1025
18 1 7.8446 -2.7110 -0.1738
19 6 6.3641 1.5306 0.7170
20 6 6.3820 3.0598 0.6700
21 6 7.6896 2.2752 0.5455
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5139 0.8899
24 1 -0.3634 0.5139 -0.8900
25 1 1.8932 -0.5139 -0.8900
26 1 1.8932 -0.5139 0.8900
27 1 2.7217 2.9425 1.5344
28 1 3.0096 1.1856 2.0157
29 1 4.3690 -0.1609 0.6955
30 1 4.0966 -0.1997 -1.0630
31 1 6.9133 -0.8868 0.1080
32 1 6.1229 -0.9842 -1.4840
33 1 10.7390 -0.9723 -2.5621
34 1 6.1730 1.0587 1.6808
35 1 5.9954 3.5402 -0.2289
36 1 6.2025 3.5942 1.6029
37 1 8.3704 2.2935 1.3966
38 1 8.1637 2.2395 -0.4354
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723125261.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:26
Heat of formation + Delta-G solvation = 48.172850 kcal
Electronic energy + Delta-G solvation = -15608.819114 eV
Core-core repulsion = 13259.794890 eV
Total energy + Delta-G solvation = -2349.024224 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.65684 -36.92892 -33.50292 -32.44236 -31.72400 -28.18907 -24.92596 -23.89304
-21.87047 -21.49182 -21.14879 -19.70815 -18.99333 -16.78855 -15.58900 -15.02467
-14.64308 -14.44740 -14.08103 -13.96476 -13.40401 -12.71968 -12.55579 -12.30632
-11.99127 -11.76182 -11.67770 -11.33087 -11.13193 -10.92584 -10.70159 -10.56200
-10.35247 -10.02716 -9.72209 -9.58563 -9.39608 -9.11456 -9.02550 -8.50259
-7.34766 -6.00576 -3.96233 3.29924 3.37518 3.39365 3.97341 4.45033
4.57537 4.70552 4.76942 5.03110 5.13868 5.22867 5.30626 5.36053
5.54638 5.70548 5.74343 5.80728 5.84751 5.93623 5.95595 6.01777
6.07984 6.10981 6.16956 6.22948 6.30216 6.42357 6.44655 6.61044
6.79868 6.83532 7.01598 7.23066 7.69103 7.95357 8.15373 8.71765
9.08962 9.61340 11.11917
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.028386 B = 0.007493 C = 0.006246
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.154743 B = 3735.860670 C = 4482.036328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.095 4.095
3 C -0.156 4.156
4 H 0.099 0.901
5 C -0.178 4.178
6 C -0.125 4.125
7 H 0.110 0.890
8 C 0.089 3.911
9 N -0.500 5.500
10 C 0.162 3.838
11 C -0.499 4.499
12 H 0.088 0.912
13 C 0.067 3.933
14 N -0.902 5.902
15 Si 0.870 3.130
16 H -0.277 1.277
17 H -0.287 1.287
18 H -0.269 1.269
19 C 0.026 3.974
20 C -0.179 4.179
21 C -0.157 4.157
22 H 0.051 0.949
23 H 0.052 0.948
24 H 0.053 0.947
25 H 0.066 0.934
26 H 0.060 0.940
27 H 0.087 0.913
28 H 0.087 0.913
29 H 0.022 0.978
30 H 0.071 0.929
31 H -0.008 1.008
32 H 0.021 0.979
33 H 0.262 0.738
34 H 0.066 0.934
35 H 0.090 0.910
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.529 2.498 6.657 16.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.132 4.132
3 C -0.174 4.174
4 H 0.117 0.883
5 C -0.215 4.215
6 C -0.143 4.143
7 H 0.128 0.872
8 C -0.039 4.039
9 N -0.224 5.224
10 C 0.036 3.964
11 C -0.537 4.537
12 H 0.105 0.895
13 C -0.134 4.134
14 N -0.542 5.542
15 Si 0.698 3.302
16 H -0.203 1.203
17 H -0.213 1.213
18 H -0.194 1.194
19 C -0.083 4.083
20 C -0.217 4.217
21 C -0.194 4.194
22 H 0.070 0.930
23 H 0.071 0.929
24 H 0.072 0.928
25 H 0.085 0.915
26 H 0.079 0.921
27 H 0.106 0.894
28 H 0.105 0.895
29 H 0.040 0.960
30 H 0.090 0.910
31 H 0.010 0.990
32 H 0.039 0.961
33 H 0.072 0.928
34 H 0.083 0.917
35 H 0.109 0.891
36 H 0.095 0.905
37 H 0.096 0.904
38 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -14.335 2.731 6.188 15.851
hybrid contribution -0.028 -1.610 0.926 1.858
sum -14.363 1.121 7.113 16.067
Atomic orbital electron populations
1.21742 0.95910 1.01223 1.01586 1.21085 0.95398 0.94685 1.02044
1.22430 0.94383 0.97635 1.02985 0.88257 1.23089 1.05194 1.01496
0.91752 1.22381 0.91736 1.00732 0.99491 0.87205 1.21590 0.89315
0.93936 0.99078 1.61699 1.00103 1.27324 1.33261 1.20201 0.93450
0.88045 0.94706 1.21130 0.98040 0.96994 1.37569 0.89458 1.24882
0.95191 0.98212 0.95076 1.69880 1.06852 1.34635 1.42801 0.86942
0.77536 0.86533 0.79215 1.20301 1.21294 1.19367 1.21990 1.02064
0.92304 0.91956 1.22954 1.03456 0.93784 1.01491 1.23241 0.89949
1.01463 1.04716 0.93015 0.92911 0.92828 0.91518 0.92104 0.89439
0.89473 0.95997 0.91050 0.99041 0.96137 0.92777 0.91667 0.89129
0.90477 0.90372 0.85646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.39 9.87 37.16 0.37 -1.03 16
2 C -0.09 -1.08 5.30 -26.73 -0.14 -1.22 16
3 C -0.16 -1.90 5.74 -90.62 -0.52 -2.42 16
4 H 0.10 1.13 8.07 -51.93 -0.42 0.71 16
5 C -0.18 -2.25 9.82 -26.73 -0.26 -2.52 16
6 C -0.12 -1.84 4.95 -90.62 -0.45 -2.29 16
7 H 0.11 1.74 7.98 -51.93 -0.41 1.32 16
8 C 0.09 1.55 4.31 -3.82 -0.02 1.54 16
9 N -0.50 -10.52 4.58 -228.07 -1.04 -11.56 16
10 C 0.16 3.94 3.85 -4.98 -0.02 3.92 16
11 C -0.50 -13.93 8.34 -34.44 -0.29 -14.22 16
12 H 0.09 2.62 5.86 -52.49 -0.31 2.31 16
13 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16
14 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16
15 Si 0.87 21.55 27.58 -169.99 -4.69 16.86 16
16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
18 H -0.27 -6.47 6.39 56.52 0.36 -6.11 16
19 C 0.03 0.51 4.43 -67.71 -0.30 0.21 16
20 C -0.18 -3.06 9.96 -26.73 -0.27 -3.32 16
21 C -0.16 -3.14 9.43 -26.73 -0.25 -3.39 16
22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16
25 H 0.07 0.80 7.60 -51.93 -0.39 0.40 16
26 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16
27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16
28 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16
29 H 0.02 0.38 7.86 -51.93 -0.41 -0.03 16
30 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16
31 H -0.01 -0.20 6.68 -51.93 -0.35 -0.55 16
32 H 0.02 0.50 7.45 -51.93 -0.39 0.11 16
33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
35 H 0.09 1.57 8.05 -51.93 -0.42 1.15 16
36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16
38 H 0.13 2.95 5.29 -51.93 -0.27 2.68 16
LS Contribution 301.42 15.07 4.54 4.54
Total: -1.00 -29.03 301.42 -9.37 -38.39
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: -6.70 Total: 1.30 kcal
Atomic # 6 Polarization: -20.66 SS G_CDS: -2.24 Total: -22.90 kcal
Atomic # 7 Polarization: -37.92 SS G_CDS: -0.27 Total: -38.19 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -4.69 Total: 16.86 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -29.03 -9.37 -38.39 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723125261.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.566 kcal
(2) G-P(sol) polarization free energy of solvation -29.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds