Wall clock time and date at job start Mon Mar 30 2020 02:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47384 * 2 1
4 4 H 1.08995 * 115.54938 * 330.72350 * 3 2 1
5 5 C 1.53001 * 117.49759 * 116.39104 * 3 2 1
6 6 C 1.52996 * 60.00000 * 107.48991 * 5 3 2
7 7 H 1.09001 * 117.50209 * 107.48968 * 6 5 3
8 8 C 1.53005 * 117.49996 * 252.51237 * 6 5 3
9 9 N 1.46900 * 109.47017 * 243.60662 * 8 6 5
10 10 C 1.46898 * 110.99918 * 189.99688 * 9 8 6
11 11 C 1.50704 * 109.47020 * 161.29291 * 10 9 8
12 12 H 1.08000 * 119.99808 * 354.47024 * 11 10 9
13 13 C 1.37869 * 120.00150 * 174.47318 * 11 10 9
14 14 N 1.31515 * 120.00518 * 180.02562 * 13 11 10
15 15 Si 1.86810 * 119.99874 * 359.97438 * 13 11 10
16 16 H 1.48493 * 109.47048 * 90.00068 * 15 13 11
17 17 H 1.48500 * 109.46998 * 209.99995 * 15 13 11
18 18 H 1.48500 * 109.46780 * 329.99933 * 15 13 11
19 19 C 1.46901 * 110.99879 * 66.04549 * 9 8 6
20 20 C 1.53006 * 117.49998 * 261.10455 * 19 9 8
21 21 C 1.52996 * 59.99898 * 252.51073 * 20 19 9
22 22 H 1.09000 * 109.47754 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.47297 * 300.00300 * 1 2 3
24 24 H 1.09008 * 109.47184 * 59.99769 * 1 2 3
25 25 H 1.08998 * 109.46567 * 239.99564 * 2 1 3
26 26 H 1.09004 * 109.46513 * 120.00475 * 2 1 3
27 27 H 1.09002 * 117.49930 * 214.98129 * 5 3 2
28 28 H 1.09003 * 117.49686 * 359.97438 * 5 3 2
29 29 H 1.09000 * 109.46962 * 3.60569 * 8 6 5
30 30 H 1.09000 * 109.47044 * 123.60503 * 8 6 5
31 31 H 1.09005 * 109.47266 * 281.29030 * 10 9 8
32 32 H 1.08996 * 109.47222 * 41.29241 * 10 9 8
33 33 H 0.96993 * 120.00630 * 180.02562 * 14 13 11
34 34 H 1.09002 * 115.55573 * 46.80868 * 19 9 8
35 35 H 1.09003 * 117.49435 * 0.02562 * 20 19 9
36 36 H 1.09002 * 117.50191 * 145.01706 * 20 19 9
37 37 H 1.09005 * 117.49632 * 252.50737 * 21 20 19
38 38 H 1.09002 * 117.49725 * 107.48980 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.3881 2.1716 -0.4809
5 6 2.8443 1.9073 1.2157
6 6 3.5502 1.6578 -0.1185
7 1 3.8920 2.5287 -0.6778
8 6 4.4346 0.4141 -0.2281
9 7 5.8278 0.8222 -0.4529
10 6 6.6658 -0.3338 -0.7982
11 6 7.9341 0.1442 -1.4571
12 1 8.0622 1.1920 -1.6856
13 6 8.9309 -0.7560 -1.7683
14 7 10.0379 -0.3390 -2.3428
15 14 8.7096 -2.5683 -1.3725
16 1 8.0734 -3.2528 -2.5264
17 1 10.0349 -3.1814 -1.1025
18 1 7.8446 -2.7110 -0.1738
19 6 6.3641 1.5306 0.7170
20 6 6.3820 3.0598 0.6700
21 6 7.6896 2.2752 0.5455
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5139 0.8899
24 1 -0.3634 0.5139 -0.8900
25 1 1.8932 -0.5139 -0.8900
26 1 1.8932 -0.5139 0.8900
27 1 2.7217 2.9425 1.5344
28 1 3.0096 1.1856 2.0157
29 1 4.3690 -0.1609 0.6955
30 1 4.0966 -0.1997 -1.0630
31 1 6.9133 -0.8868 0.1080
32 1 6.1229 -0.9842 -1.4840
33 1 10.7390 -0.9723 -2.5621
34 1 6.1730 1.0587 1.6808
35 1 5.9954 3.5402 -0.2289
36 1 6.2025 3.5942 1.6029
37 1 8.3704 2.2935 1.3966
38 1 8.1637 2.2395 -0.4354
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723125261.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:26
Heat of formation + Delta-G solvation = 31.560938 kcal
Electronic energy + Delta-G solvation = -15609.539460 eV
Core-core repulsion = 13259.794890 eV
Total energy + Delta-G solvation = -2349.744570 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.96219 -38.27207 -35.25157 -34.28677 -32.79080 -30.05208 -26.49649 -24.75795
-23.75570 -23.00954 -22.19981 -21.29364 -20.23682 -18.81805 -16.93441 -16.60110
-16.14078 -15.88489 -15.58612 -15.08016 -14.87758 -14.46005 -13.89436 -13.83352
-13.46850 -13.13283 -12.91330 -12.71910 -12.45047 -12.26518 -12.14337 -12.01924
-11.88205 -11.67029 -11.29877 -11.12531 -10.79914 -10.68330 -10.56501 -10.48436
-9.00597 -8.22016 -6.22488 1.33737 1.34993 1.44537 2.36334 2.88056
3.07586 3.09806 3.23650 3.80044 3.98813 4.03959 4.21125 4.27424
4.34536 4.46772 4.50401 4.58602 4.63590 4.70362 4.80078 4.86960
4.91699 4.92062 4.98741 5.03906 5.11018 5.20786 5.27193 5.32732
5.33228 5.41094 5.53903 5.55227 5.63718 6.07002 6.50175 6.70801
6.84355 7.39013 8.93514
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.028386 B = 0.007493 C = 0.006246
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.154743 B = 3735.860670 C = 4482.036328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.097 4.097
3 C -0.140 4.140
4 H 0.112 0.888
5 C -0.165 4.165
6 C -0.145 4.145
7 H 0.097 0.903
8 C 0.094 3.906
9 N -0.516 5.516
10 C 0.170 3.830
11 C -0.498 4.498
12 H 0.053 0.947
13 C 0.009 3.991
14 N -0.948 5.948
15 Si 0.937 3.063
16 H -0.268 1.268
17 H -0.284 1.284
18 H -0.256 1.256
19 C 0.017 3.983
20 C -0.140 4.140
21 C -0.180 4.180
22 H 0.058 0.942
23 H 0.059 0.941
24 H 0.057 0.943
25 H 0.057 0.943
26 H 0.058 0.942
27 H 0.102 0.898
28 H 0.088 0.912
29 H 0.026 0.974
30 H 0.065 0.935
31 H -0.013 1.013
32 H 0.022 0.978
33 H 0.264 0.736
34 H 0.076 0.924
35 H 0.086 0.914
36 H 0.113 0.887
37 H 0.090 0.910
38 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.895 2.165 8.210 18.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.135 4.135
3 C -0.159 4.159
4 H 0.130 0.870
5 C -0.202 4.202
6 C -0.163 4.163
7 H 0.115 0.885
8 C -0.034 4.034
9 N -0.240 5.240
10 C 0.044 3.956
11 C -0.537 4.537
12 H 0.071 0.929
13 C -0.188 4.188
14 N -0.590 5.590
15 Si 0.761 3.239
16 H -0.193 1.193
17 H -0.210 1.210
18 H -0.180 1.180
19 C -0.092 4.092
20 C -0.178 4.178
21 C -0.217 4.217
22 H 0.077 0.923
23 H 0.078 0.922
24 H 0.076 0.924
25 H 0.076 0.924
26 H 0.076 0.924
27 H 0.121 0.879
28 H 0.107 0.893
29 H 0.044 0.956
30 H 0.083 0.917
31 H 0.005 0.995
32 H 0.040 0.960
33 H 0.073 0.927
34 H 0.094 0.906
35 H 0.105 0.895
36 H 0.131 0.869
37 H 0.108 0.892
38 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -16.730 2.410 7.748 18.594
hybrid contribution 0.696 -1.406 0.422 1.625
sum -16.035 1.004 8.171 18.024
Atomic orbital electron populations
1.21709 0.94233 1.01953 1.02168 1.21116 0.96887 0.93986 1.01482
1.22530 0.92588 0.98451 1.02287 0.86951 1.23145 1.03612 1.02464
0.90966 1.22152 0.93122 0.99169 1.01889 0.88462 1.21586 0.87467
0.95402 0.98941 1.61614 1.01466 1.26131 1.34742 1.19963 0.92479
0.89153 0.94033 1.21350 0.99658 0.95597 1.37074 0.92914 1.25723
0.94821 1.03132 0.95093 1.70031 1.07991 1.36368 1.44610 0.85874
0.77768 0.80587 0.79651 1.19291 1.20958 1.17973 1.22101 1.01495
0.93887 0.91739 1.22960 0.99681 0.92199 1.02945 1.23071 0.91152
1.04587 1.02894 0.92298 0.92199 0.92361 0.92446 0.92372 0.87938
0.89327 0.95582 0.91657 0.99528 0.95967 0.92699 0.90616 0.89510
0.86902 0.89164 0.89964
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 9.87 71.98 0.71 -1.59 16
2 C -0.10 -1.99 5.30 30.59 0.16 -1.83 16
3 C -0.14 -3.04 5.74 -10.80 -0.06 -3.10 16
4 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16
5 C -0.16 -3.64 9.82 30.59 0.30 -3.34 16
6 C -0.14 -3.99 4.95 -10.79 -0.05 -4.05 16
7 H 0.10 2.95 7.98 -2.39 -0.02 2.93 16
8 C 0.09 3.16 4.31 86.30 0.37 3.53 16
9 N -0.52 -21.59 4.58 -875.49 -4.01 -25.60 16
10 C 0.17 8.33 3.85 85.56 0.33 8.66 16
11 C -0.50 -28.68 8.34 25.60 0.21 -28.47 16
12 H 0.05 3.35 5.86 -2.91 -0.02 3.34 16
13 C 0.01 0.53 5.47 84.65 0.46 0.99 16
14 N -0.95 -59.45 13.96 21.44 0.30 -59.16 16
15 Si 0.94 44.68 27.58 68.60 1.89 46.57 16
16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16
18 H -0.26 -11.55 6.39 99.48 0.64 -10.91 16
19 C 0.02 0.63 4.43 44.92 0.20 0.83 16
20 C -0.14 -4.55 9.96 30.60 0.30 -4.25 16
21 C -0.18 -7.28 9.43 30.59 0.29 -6.99 16
22 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16
23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
24 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16
25 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16
26 H 0.06 1.22 7.88 -2.38 -0.02 1.20 16
27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
28 H 0.09 1.96 7.92 -2.39 -0.02 1.94 16
29 H 0.03 0.85 7.86 -2.39 -0.02 0.83 16
30 H 0.07 2.23 7.29 -2.39 -0.02 2.22 16
31 H -0.01 -0.64 6.68 -2.38 -0.02 -0.66 16
32 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16
33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16
34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16
35 H 0.09 2.90 8.05 -2.39 -0.02 2.88 16
36 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16
37 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16
38 H 0.08 4.10 5.29 -2.39 -0.01 4.09 16
Total: -1.00 -63.75 301.42 2.34 -61.41
By element:
Atomic # 1 Polarization: 15.45 SS G_CDS: 0.93 Total: 16.38 kcal
Atomic # 6 Polarization: -42.83 SS G_CDS: 3.23 Total: -39.61 kcal
Atomic # 7 Polarization: -81.04 SS G_CDS: -3.71 Total: -84.75 kcal
Atomic # 14 Polarization: 44.68 SS G_CDS: 1.89 Total: 46.57 kcal
Total: -63.75 2.34 -61.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723125261.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.973 kcal
(2) G-P(sol) polarization free energy of solvation -63.751 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds