Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 H 1.09010 * 115.55799 * 330.68187 * 3 2 1 5 5 C 1.52991 * 117.50166 * 116.37269 * 3 2 1 6 6 C 1.52996 * 117.50038 * 184.99851 * 3 2 1 7 7 H 1.09000 * 117.49898 * 0.02562 * 6 3 2 8 8 C 1.53000 * 117.49907 * 145.01786 * 6 3 2 9 9 N 1.46904 * 109.47008 * 184.99884 * 8 6 3 10 10 C 1.46899 * 111.00136 * 169.99762 * 9 8 6 11 11 C 1.50701 * 109.47222 * 285.56891 * 10 9 8 12 12 H 1.07999 * 119.99765 * 4.85328 * 11 10 9 13 13 C 1.37879 * 120.00152 * 184.85482 * 11 10 9 14 14 N 1.31516 * 119.99605 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00289 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47151 * 89.99608 * 15 13 11 17 17 H 1.48496 * 109.47167 * 210.00002 * 15 13 11 18 18 H 1.48505 * 109.46805 * 329.99984 * 15 13 11 19 19 C 1.46894 * 111.00056 * 293.95385 * 9 8 6 20 20 C 1.52996 * 117.50078 * 246.61040 * 19 9 8 21 21 C 1.53008 * 117.50098 * 177.95243 * 19 9 8 22 22 H 1.09000 * 109.46838 * 60.00795 * 1 2 3 23 23 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47640 * 300.00486 * 1 2 3 25 25 H 1.08995 * 109.47149 * 239.99456 * 2 1 3 26 26 H 1.09000 * 109.46838 * 119.99205 * 2 1 3 27 27 H 1.09006 * 117.50191 * 214.97322 * 5 3 2 28 28 H 1.08996 * 117.50277 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.46967 * 304.99672 * 8 6 3 30 30 H 1.08996 * 109.47546 * 65.00359 * 8 6 3 31 31 H 1.09001 * 109.46807 * 45.56897 * 10 9 8 32 32 H 1.09000 * 109.47208 * 165.57085 * 10 9 8 33 33 H 0.96998 * 119.99757 * 180.02562 * 14 13 11 34 34 H 1.09002 * 115.54969 * 32.28434 * 19 9 8 35 35 H 1.09007 * 117.49796 * 0.02562 * 20 19 9 36 36 H 1.09003 * 117.49852 * 145.01751 * 20 19 9 37 37 H 1.08992 * 117.49750 * 214.98113 * 21 19 9 38 38 H 1.09007 * 117.49443 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 -0.4815 5 6 2.8438 1.9076 1.2158 6 6 3.5501 1.6579 -0.1182 7 1 4.1803 0.7720 -0.1965 8 6 4.0300 2.8804 -0.9032 9 7 5.4950 2.8512 -1.0075 10 6 5.9763 3.8711 -1.9488 11 6 5.6906 3.4269 -3.3602 12 1 5.1314 2.5202 -3.5381 13 6 6.1430 4.1779 -4.4243 14 7 6.8234 5.2823 -4.2075 15 14 5.7882 3.6277 -6.1738 16 1 4.5019 4.2155 -6.6264 17 1 6.8827 4.0838 -7.0677 18 1 5.6980 2.1460 -6.2179 19 6 6.1200 3.0155 0.3117 20 6 6.9213 4.2951 0.5593 21 6 7.6475 2.9594 0.3818 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.7212 2.9429 1.5342 28 1 3.0098 1.1859 2.0156 29 1 3.5943 2.8646 -1.9022 30 1 3.7207 3.7887 -0.3861 31 1 5.4660 4.8145 -1.7544 32 1 7.0503 4.0059 -1.8207 33 1 7.1414 5.8108 -4.9560 34 1 5.5621 2.6007 1.1512 35 1 6.9844 5.0153 -0.2565 36 1 6.8909 4.7220 1.5619 37 1 8.0943 2.5079 1.2675 38 1 8.1885 2.8001 -0.5510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = 40.910170 kcal Electronic energy + Delta-G solvation = -15429.454939 eV Core-core repulsion = 13080.115782 eV Total energy + Delta-G solvation = -2349.339157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.60610 -37.18233 -33.49369 -32.51622 -31.41400 -27.42137 -25.06701 -23.66972 -22.61694 -21.64100 -20.59700 -20.04274 -18.77036 -16.71416 -15.35839 -15.00803 -14.65426 -14.46956 -14.19218 -13.82729 -12.98266 -12.78095 -12.41017 -12.00816 -11.92148 -11.66742 -11.39499 -11.12813 -10.98701 -10.92424 -10.78144 -10.67955 -10.45904 -10.19921 -9.90217 -9.74201 -9.39121 -9.31087 -9.06147 -8.40043 -7.06619 -6.00833 -4.01825 3.32923 3.39134 3.43974 4.02977 4.40749 4.50313 4.71504 4.98785 5.11645 5.21974 5.29654 5.34936 5.44934 5.53054 5.60927 5.65392 5.80374 5.81958 5.89305 5.98033 6.07865 6.14296 6.19868 6.22509 6.26077 6.35951 6.44506 6.55905 6.66793 6.81806 6.83577 7.31120 7.34089 7.84227 8.14115 8.25577 8.57370 9.05964 9.62115 11.09795 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.007985 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.836557 B = 3505.778041 C = 4682.301355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.153 4.153 4 H 0.101 0.899 5 C -0.185 4.185 6 C -0.130 4.130 7 H 0.109 0.891 8 C 0.095 3.905 9 N -0.503 5.503 10 C 0.188 3.812 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.030 3.970 20 C -0.228 4.228 21 C -0.177 4.177 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.023 0.977 31 H -0.009 1.009 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 -6.614 9.786 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.172 4.172 4 H 0.119 0.881 5 C -0.222 4.222 6 C -0.148 4.148 7 H 0.127 0.873 8 C -0.033 4.033 9 N -0.224 5.224 10 C 0.064 3.936 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.081 4.081 20 C -0.267 4.267 21 C -0.215 4.215 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.008 0.992 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.163 -6.933 9.475 13.754 hybrid contribution -0.254 0.696 -0.610 0.959 sum -7.417 -6.237 8.865 13.134 Atomic orbital electron populations 1.21746 0.95901 1.01132 1.01767 1.21089 0.95502 0.94564 1.01789 1.22428 0.94596 0.97574 1.02597 0.88107 1.23201 1.05653 1.01600 0.91780 1.22540 0.93387 1.01131 0.97781 0.87331 1.21544 0.89032 0.92992 0.99706 1.61964 1.04340 1.50796 1.05341 1.19854 0.96198 0.87536 0.90033 1.21188 1.34440 1.08675 0.90096 0.91907 1.24977 0.95284 0.95030 0.99311 1.69955 1.37610 1.14964 1.31404 0.86515 0.77754 0.79027 0.84250 1.20782 1.21280 1.19752 1.22628 0.92697 0.99050 0.93696 1.23581 1.08038 0.92845 1.02248 1.22988 0.95595 1.00417 1.02520 0.92685 0.93079 0.92888 0.91596 0.92241 0.89397 0.89482 0.89659 0.95916 0.99171 0.94196 0.92962 0.87646 0.87612 0.90259 0.89748 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.87 37.16 0.37 -1.10 16 2 C -0.09 -1.06 6.22 -26.73 -0.17 -1.22 16 3 C -0.15 -2.05 5.46 -90.63 -0.49 -2.54 16 4 H 0.10 1.36 8.08 -51.92 -0.42 0.95 16 5 C -0.19 -2.44 9.58 -26.74 -0.26 -2.70 16 6 C -0.13 -2.04 4.58 -90.62 -0.41 -2.46 16 7 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 8 C 0.10 1.85 5.07 -3.82 -0.02 1.83 16 9 N -0.50 -10.98 4.65 -228.08 -1.06 -12.04 16 10 C 0.19 4.91 3.38 -4.98 -0.02 4.89 16 11 C -0.51 -14.29 8.58 -34.44 -0.30 -14.59 16 12 H 0.06 1.77 7.58 -52.49 -0.40 1.37 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.03 0.56 5.83 -67.71 -0.39 0.16 16 20 C -0.23 -4.21 9.56 -26.70 -0.26 -4.47 16 21 C -0.18 -3.19 9.92 -26.69 -0.26 -3.45 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.64 7.87 -51.93 -0.41 0.24 16 27 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 28 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 29 H 0.09 1.81 7.21 -51.93 -0.37 1.44 16 30 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 31 H -0.01 -0.26 7.82 -51.93 -0.41 -0.67 16 32 H 0.04 1.11 5.63 -51.93 -0.29 0.82 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.11 1.78 7.07 -51.93 -0.37 1.41 16 35 H 0.11 2.26 6.02 -51.92 -0.31 1.95 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.10 1.96 7.47 -51.93 -0.39 1.57 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -29.01 306.25 -9.74 -38.75 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.70 Total: 2.13 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.31 Total: -24.17 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.32 Total: -38.11 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.01 -9.74 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.658 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds