Wall clock time and date at job start Mon Mar 30 2020 02:32:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.47028 * 2 1
4 4 H 1.09010 * 115.55799 * 330.68187 * 3 2 1
5 5 C 1.52991 * 117.50166 * 116.37269 * 3 2 1
6 6 C 1.52996 * 117.50038 * 184.99851 * 3 2 1
7 7 H 1.09000 * 117.49898 * 0.02562 * 6 3 2
8 8 C 1.53000 * 117.49907 * 145.01786 * 6 3 2
9 9 N 1.46904 * 109.47008 * 184.99884 * 8 6 3
10 10 C 1.46899 * 111.00136 * 169.99762 * 9 8 6
11 11 C 1.50701 * 109.47222 * 285.56891 * 10 9 8
12 12 H 1.07999 * 119.99765 * 4.85328 * 11 10 9
13 13 C 1.37879 * 120.00152 * 184.85482 * 11 10 9
14 14 N 1.31516 * 119.99605 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 120.00289 * 180.02562 * 13 11 10
16 16 H 1.48496 * 109.47151 * 89.99608 * 15 13 11
17 17 H 1.48496 * 109.47167 * 210.00002 * 15 13 11
18 18 H 1.48505 * 109.46805 * 329.99984 * 15 13 11
19 19 C 1.46894 * 111.00056 * 293.95385 * 9 8 6
20 20 C 1.52996 * 117.50078 * 246.61040 * 19 9 8
21 21 C 1.53008 * 117.50098 * 177.95243 * 19 9 8
22 22 H 1.09000 * 109.46838 * 60.00795 * 1 2 3
23 23 H 1.09005 * 109.46665 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.47640 * 300.00486 * 1 2 3
25 25 H 1.08995 * 109.47149 * 239.99456 * 2 1 3
26 26 H 1.09000 * 109.46838 * 119.99205 * 2 1 3
27 27 H 1.09006 * 117.50191 * 214.97322 * 5 3 2
28 28 H 1.08996 * 117.50277 * 0.02562 * 5 3 2
29 29 H 1.09001 * 109.46967 * 304.99672 * 8 6 3
30 30 H 1.08996 * 109.47546 * 65.00359 * 8 6 3
31 31 H 1.09001 * 109.46807 * 45.56897 * 10 9 8
32 32 H 1.09000 * 109.47208 * 165.57085 * 10 9 8
33 33 H 0.96998 * 119.99757 * 180.02562 * 14 13 11
34 34 H 1.09002 * 115.54969 * 32.28434 * 19 9 8
35 35 H 1.09007 * 117.49796 * 0.02562 * 20 19 9
36 36 H 1.09003 * 117.49852 * 145.01751 * 20 19 9
37 37 H 1.08992 * 117.49750 * 214.98113 * 21 19 9
38 38 H 1.09007 * 117.49443 * 359.97438 * 21 19 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.3883 2.1717 -0.4815
5 6 2.8438 1.9076 1.2158
6 6 3.5501 1.6579 -0.1182
7 1 4.1803 0.7720 -0.1965
8 6 4.0300 2.8804 -0.9032
9 7 5.4950 2.8512 -1.0075
10 6 5.9763 3.8711 -1.9488
11 6 5.6906 3.4269 -3.3602
12 1 5.1314 2.5202 -3.5381
13 6 6.1430 4.1779 -4.4243
14 7 6.8234 5.2823 -4.2075
15 14 5.7882 3.6277 -6.1738
16 1 4.5019 4.2155 -6.6264
17 1 6.8827 4.0838 -7.0677
18 1 5.6980 2.1460 -6.2179
19 6 6.1200 3.0155 0.3117
20 6 6.9213 4.2951 0.5593
21 6 7.6475 2.9594 0.3818
22 1 -0.3633 0.5137 -0.8901
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5139 0.8899
25 1 1.8934 -0.5139 -0.8899
26 1 1.8933 -0.5137 0.8901
27 1 2.7212 2.9429 1.5342
28 1 3.0098 1.1859 2.0156
29 1 3.5943 2.8646 -1.9022
30 1 3.7207 3.7887 -0.3861
31 1 5.4660 4.8145 -1.7544
32 1 7.0503 4.0059 -1.8207
33 1 7.1414 5.8108 -4.9560
34 1 5.5621 2.6007 1.1512
35 1 6.9844 5.0153 -0.2565
36 1 6.8909 4.7220 1.5619
37 1 8.0943 2.5079 1.2675
38 1 8.1885 2.8001 -0.5510
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723125262.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:28
Heat of formation + Delta-G solvation = 40.910170 kcal
Electronic energy + Delta-G solvation = -15429.454939 eV
Core-core repulsion = 13080.115782 eV
Total energy + Delta-G solvation = -2349.339157 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.60610 -37.18233 -33.49369 -32.51622 -31.41400 -27.42137 -25.06701 -23.66972
-22.61694 -21.64100 -20.59700 -20.04274 -18.77036 -16.71416 -15.35839 -15.00803
-14.65426 -14.46956 -14.19218 -13.82729 -12.98266 -12.78095 -12.41017 -12.00816
-11.92148 -11.66742 -11.39499 -11.12813 -10.98701 -10.92424 -10.78144 -10.67955
-10.45904 -10.19921 -9.90217 -9.74201 -9.39121 -9.31087 -9.06147 -8.40043
-7.06619 -6.00833 -4.01825 3.32923 3.39134 3.43974 4.02977 4.40749
4.50313 4.71504 4.98785 5.11645 5.21974 5.29654 5.34936 5.44934
5.53054 5.60927 5.65392 5.80374 5.81958 5.89305 5.98033 6.07865
6.14296 6.19868 6.22509 6.26077 6.35951 6.44506 6.55905 6.66793
6.81806 6.83577 7.31120 7.34089 7.84227 8.14115 8.25577 8.57370
9.05964 9.62115 11.09795
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.019800 B = 0.007985 C = 0.005979
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1413.836557 B = 3505.778041 C = 4682.301355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.092 4.092
3 C -0.153 4.153
4 H 0.101 0.899
5 C -0.185 4.185
6 C -0.130 4.130
7 H 0.109 0.891
8 C 0.095 3.905
9 N -0.503 5.503
10 C 0.188 3.812
11 C -0.505 4.505
12 H 0.063 0.937
13 C 0.055 3.945
14 N -0.900 5.900
15 Si 0.897 3.103
16 H -0.282 1.282
17 H -0.287 1.287
18 H -0.273 1.273
19 C 0.030 3.970
20 C -0.228 4.228
21 C -0.177 4.177
22 H 0.054 0.946
23 H 0.050 0.950
24 H 0.052 0.948
25 H 0.065 0.935
26 H 0.059 0.941
27 H 0.088 0.912
28 H 0.087 0.913
29 H 0.085 0.915
30 H 0.023 0.977
31 H -0.009 1.009
32 H 0.040 0.960
33 H 0.261 0.739
34 H 0.106 0.894
35 H 0.106 0.894
36 H 0.079 0.921
37 H 0.084 0.916
38 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.378 -6.614 9.786 13.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.129 4.129
3 C -0.172 4.172
4 H 0.119 0.881
5 C -0.222 4.222
6 C -0.148 4.148
7 H 0.127 0.873
8 C -0.033 4.033
9 N -0.224 5.224
10 C 0.064 3.936
11 C -0.544 4.544
12 H 0.081 0.919
13 C -0.146 4.146
14 N -0.539 5.539
15 Si 0.725 3.275
16 H -0.208 1.208
17 H -0.213 1.213
18 H -0.198 1.198
19 C -0.081 4.081
20 C -0.267 4.267
21 C -0.215 4.215
22 H 0.073 0.927
23 H 0.069 0.931
24 H 0.071 0.929
25 H 0.084 0.916
26 H 0.078 0.922
27 H 0.106 0.894
28 H 0.105 0.895
29 H 0.103 0.897
30 H 0.041 0.959
31 H 0.008 0.992
32 H 0.058 0.942
33 H 0.070 0.930
34 H 0.124 0.876
35 H 0.124 0.876
36 H 0.097 0.903
37 H 0.103 0.897
38 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -7.163 -6.933 9.475 13.754
hybrid contribution -0.254 0.696 -0.610 0.959
sum -7.417 -6.237 8.865 13.134
Atomic orbital electron populations
1.21746 0.95901 1.01132 1.01767 1.21089 0.95502 0.94564 1.01789
1.22428 0.94596 0.97574 1.02597 0.88107 1.23201 1.05653 1.01600
0.91780 1.22540 0.93387 1.01131 0.97781 0.87331 1.21544 0.89032
0.92992 0.99706 1.61964 1.04340 1.50796 1.05341 1.19854 0.96198
0.87536 0.90033 1.21188 1.34440 1.08675 0.90096 0.91907 1.24977
0.95284 0.95030 0.99311 1.69955 1.37610 1.14964 1.31404 0.86515
0.77754 0.79027 0.84250 1.20782 1.21280 1.19752 1.22628 0.92697
0.99050 0.93696 1.23581 1.08038 0.92845 1.02248 1.22988 0.95595
1.00417 1.02520 0.92685 0.93079 0.92888 0.91596 0.92241 0.89397
0.89482 0.89659 0.95916 0.99171 0.94196 0.92962 0.87646 0.87612
0.90259 0.89748 0.88428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 9.87 37.16 0.37 -1.10 16
2 C -0.09 -1.06 6.22 -26.73 -0.17 -1.22 16
3 C -0.15 -2.05 5.46 -90.63 -0.49 -2.54 16
4 H 0.10 1.36 8.08 -51.92 -0.42 0.95 16
5 C -0.19 -2.44 9.58 -26.74 -0.26 -2.70 16
6 C -0.13 -2.04 4.58 -90.62 -0.41 -2.46 16
7 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16
8 C 0.10 1.85 5.07 -3.82 -0.02 1.83 16
9 N -0.50 -10.98 4.65 -228.08 -1.06 -12.04 16
10 C 0.19 4.91 3.38 -4.98 -0.02 4.89 16
11 C -0.51 -14.29 8.58 -34.44 -0.30 -14.59 16
12 H 0.06 1.77 7.58 -52.49 -0.40 1.37 16
13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16
15 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
19 C 0.03 0.56 5.83 -67.71 -0.39 0.16 16
20 C -0.23 -4.21 9.56 -26.70 -0.26 -4.47 16
21 C -0.18 -3.19 9.92 -26.69 -0.26 -3.45 16
22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
26 H 0.06 0.64 7.87 -51.93 -0.41 0.24 16
27 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16
28 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16
29 H 0.09 1.81 7.21 -51.93 -0.37 1.44 16
30 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16
31 H -0.01 -0.26 7.82 -51.93 -0.41 -0.67 16
32 H 0.04 1.11 5.63 -51.93 -0.29 0.82 16
33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
34 H 0.11 1.78 7.07 -51.93 -0.37 1.41 16
35 H 0.11 2.26 6.02 -51.92 -0.31 1.95 16
36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
38 H 0.10 1.96 7.47 -51.93 -0.39 1.57 16
LS Contribution 306.25 15.07 4.62 4.62
Total: -1.00 -29.01 306.25 -9.74 -38.75
By element:
Atomic # 1 Polarization: 8.83 SS G_CDS: -6.70 Total: 2.13 kcal
Atomic # 6 Polarization: -21.86 SS G_CDS: -2.31 Total: -24.17 kcal
Atomic # 7 Polarization: -37.79 SS G_CDS: -0.32 Total: -38.11 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.01 -9.74 -38.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723125262.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.658 kcal
(2) G-P(sol) polarization free energy of solvation -29.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds