Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 H 1.09010 * 115.55799 * 330.68187 * 3 2 1 5 5 C 1.52991 * 117.50166 * 116.37269 * 3 2 1 6 6 C 1.52996 * 117.50038 * 184.99851 * 3 2 1 7 7 H 1.09000 * 117.49898 * 0.02562 * 6 3 2 8 8 C 1.53000 * 117.49907 * 145.01786 * 6 3 2 9 9 N 1.46904 * 109.47008 * 184.99884 * 8 6 3 10 10 C 1.46899 * 111.00136 * 169.99762 * 9 8 6 11 11 C 1.50701 * 109.47222 * 285.56891 * 10 9 8 12 12 H 1.07999 * 119.99765 * 4.85328 * 11 10 9 13 13 C 1.37879 * 120.00152 * 184.85482 * 11 10 9 14 14 N 1.31516 * 119.99605 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00289 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47151 * 89.99608 * 15 13 11 17 17 H 1.48496 * 109.47167 * 210.00002 * 15 13 11 18 18 H 1.48505 * 109.46805 * 329.99984 * 15 13 11 19 19 C 1.46894 * 111.00056 * 293.95385 * 9 8 6 20 20 C 1.52996 * 117.50078 * 246.61040 * 19 9 8 21 21 C 1.53008 * 117.50098 * 177.95243 * 19 9 8 22 22 H 1.09000 * 109.46838 * 60.00795 * 1 2 3 23 23 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47640 * 300.00486 * 1 2 3 25 25 H 1.08995 * 109.47149 * 239.99456 * 2 1 3 26 26 H 1.09000 * 109.46838 * 119.99205 * 2 1 3 27 27 H 1.09006 * 117.50191 * 214.97322 * 5 3 2 28 28 H 1.08996 * 117.50277 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.46967 * 304.99672 * 8 6 3 30 30 H 1.08996 * 109.47546 * 65.00359 * 8 6 3 31 31 H 1.09001 * 109.46807 * 45.56897 * 10 9 8 32 32 H 1.09000 * 109.47208 * 165.57085 * 10 9 8 33 33 H 0.96998 * 119.99757 * 180.02562 * 14 13 11 34 34 H 1.09002 * 115.54969 * 32.28434 * 19 9 8 35 35 H 1.09007 * 117.49796 * 0.02562 * 20 19 9 36 36 H 1.09003 * 117.49852 * 145.01751 * 20 19 9 37 37 H 1.08992 * 117.49750 * 214.98113 * 21 19 9 38 38 H 1.09007 * 117.49443 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 -0.4815 5 6 2.8438 1.9076 1.2158 6 6 3.5501 1.6579 -0.1182 7 1 4.1803 0.7720 -0.1965 8 6 4.0300 2.8804 -0.9032 9 7 5.4950 2.8512 -1.0075 10 6 5.9763 3.8711 -1.9488 11 6 5.6906 3.4269 -3.3602 12 1 5.1314 2.5202 -3.5381 13 6 6.1430 4.1779 -4.4243 14 7 6.8234 5.2823 -4.2075 15 14 5.7882 3.6277 -6.1738 16 1 4.5019 4.2155 -6.6264 17 1 6.8827 4.0838 -7.0677 18 1 5.6980 2.1460 -6.2179 19 6 6.1200 3.0155 0.3117 20 6 6.9213 4.2951 0.5593 21 6 7.6475 2.9594 0.3818 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.7212 2.9429 1.5342 28 1 3.0098 1.1859 2.0156 29 1 3.5943 2.8646 -1.9022 30 1 3.7207 3.7887 -0.3861 31 1 5.4660 4.8145 -1.7544 32 1 7.0503 4.0059 -1.8207 33 1 7.1414 5.8108 -4.9560 34 1 5.5621 2.6007 1.1512 35 1 6.9844 5.0153 -0.2565 36 1 6.8909 4.7220 1.5619 37 1 8.0943 2.5079 1.2675 38 1 8.1885 2.8001 -0.5510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = 24.786855 kcal Electronic energy + Delta-G solvation = -15430.154099 eV Core-core repulsion = 13080.115782 eV Total energy + Delta-G solvation = -2350.038316 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07836 -38.48796 -35.33767 -34.18785 -32.68376 -29.36960 -26.75657 -24.61398 -24.51050 -23.15259 -21.83552 -21.19397 -20.40083 -18.75266 -17.09028 -16.76674 -16.04714 -15.77713 -15.63031 -15.05010 -14.39960 -14.37674 -14.06236 -13.44523 -13.35114 -13.05848 -12.87269 -12.77053 -12.60025 -12.36115 -12.18466 -12.06131 -11.92632 -11.77152 -11.67892 -11.18948 -11.15419 -10.68214 -10.63011 -10.44425 -8.83027 -8.21290 -6.31722 1.38535 1.40069 1.51964 2.38463 2.82149 2.99953 3.09977 3.32005 3.76722 4.01976 4.05952 4.10698 4.15605 4.26972 4.34776 4.48045 4.55277 4.60832 4.77693 4.81249 4.87452 4.89253 4.95051 5.02628 5.10762 5.19482 5.20049 5.29604 5.30908 5.32413 5.32962 5.42873 5.57223 5.64350 6.06814 6.40112 6.65912 6.84455 7.37718 8.89055 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.007985 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.836557 B = 3505.778041 C = 4682.301355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.145 4.145 4 H 0.096 0.904 5 C -0.163 4.163 6 C -0.147 4.147 7 H 0.103 0.897 8 C 0.101 3.899 9 N -0.514 5.514 10 C 0.209 3.791 11 C -0.525 4.525 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.022 3.978 20 C -0.227 4.227 21 C -0.168 4.168 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.018 0.982 31 H -0.042 1.042 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -8.131 10.985 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.164 4.164 4 H 0.114 0.886 5 C -0.200 4.200 6 C -0.166 4.166 7 H 0.121 0.879 8 C -0.026 4.026 9 N -0.235 5.235 10 C 0.083 3.917 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.088 4.088 20 C -0.266 4.266 21 C -0.206 4.206 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.037 0.963 31 H -0.024 1.024 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.178 -8.460 10.691 15.898 hybrid contribution 0.063 1.195 -0.943 1.524 sum -8.115 -7.265 9.748 14.617 Atomic orbital electron populations 1.21725 0.94595 1.02106 1.01875 1.21107 0.96618 0.93033 1.02047 1.22531 0.92655 0.98861 1.02324 0.88617 1.23266 1.03168 1.02382 0.91185 1.22241 0.95112 0.99127 1.00117 0.87912 1.21452 0.87433 0.94928 0.98828 1.61880 1.05981 1.48955 1.06721 1.19421 0.94306 0.87251 0.90676 1.21497 1.34592 1.08653 0.91564 0.92337 1.25893 0.94836 0.94930 1.03889 1.70084 1.38427 1.16075 1.32866 0.85410 0.77947 0.78852 0.78606 1.19768 1.20550 1.18997 1.22829 0.93401 0.99702 0.92854 1.23502 1.08269 0.92272 1.02606 1.23036 0.94809 0.99961 1.02801 0.93166 0.91706 0.92230 0.92341 0.91015 0.89202 0.87199 0.92624 0.96335 1.02401 0.96663 0.92683 0.84661 0.91529 0.86878 0.85725 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.87 71.98 0.71 -1.82 16 2 C -0.09 -1.88 6.22 30.60 0.19 -1.69 16 3 C -0.14 -3.62 5.46 -10.80 -0.06 -3.68 16 4 H 0.10 2.49 8.08 -2.38 -0.02 2.47 16 5 C -0.16 -3.84 9.58 30.59 0.29 -3.55 16 6 C -0.15 -4.49 4.58 -10.80 -0.05 -4.53 16 7 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 8 C 0.10 4.03 5.07 86.30 0.44 4.46 16 9 N -0.51 -23.04 4.65 -875.52 -4.07 -27.12 16 10 C 0.21 11.50 3.38 85.56 0.29 11.79 16 11 C -0.52 -30.78 8.58 25.60 0.22 -30.56 16 12 H 0.06 3.40 7.58 -2.91 -0.02 3.38 16 13 C 0.00 0.14 5.46 84.65 0.46 0.60 16 14 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 15 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.02 0.80 5.83 44.92 0.26 1.06 16 20 C -0.23 -8.37 9.56 30.62 0.29 -8.08 16 21 C -0.17 -5.91 9.92 30.62 0.30 -5.61 16 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.32 7.87 -2.39 -0.02 1.30 16 27 H 0.09 2.12 8.03 -2.38 -0.02 2.10 16 28 H 0.11 2.14 8.03 -2.39 -0.02 2.12 16 29 H 0.06 2.48 7.21 -2.39 -0.02 2.47 16 30 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 31 H -0.04 -2.49 7.82 -2.39 -0.02 -2.51 16 32 H 0.02 0.91 5.63 -2.39 -0.01 0.89 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.14 4.20 7.07 -2.39 -0.02 4.18 16 35 H 0.07 3.00 6.02 -2.38 -0.01 2.98 16 36 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.07 2.80 7.47 -2.38 -0.02 2.78 16 Total: -1.00 -64.64 306.25 2.59 -62.04 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.00 Total: 16.37 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.35 Total: -41.60 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.79 Total: -84.19 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.64 2.59 -62.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.831 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds