Wall clock time and date at job start Mon Mar 30 2020 03:41:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 110.33351 * 2 1
4 4 C 1.54900 * 110.37650 * 237.62311 * 2 1 3
5 5 C 1.55398 * 101.74345 * 204.18894 * 4 2 1
6 6 C 1.54311 * 102.89991 * 35.48061 * 5 4 2
7 7 N 1.47446 * 107.37167 * 337.89633 * 6 5 4
8 8 C 1.46904 * 110.99780 * 236.66274 * 7 6 5
9 9 H 1.09004 * 109.41363 * 53.62237 * 8 7 6
10 10 C 1.52962 * 109.41142 * 173.40759 * 8 7 6
11 11 C 1.53226 * 109.40523 * 183.70288 * 10 8 7
12 12 C 1.51270 * 108.53707 * 305.37615 * 11 10 8
13 13 C 1.37879 * 120.84712 * 231.32802 * 12 11 10
14 14 N 1.31515 * 119.99849 * 180.02562 * 13 12 11
15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 12 11
16 16 H 1.48500 * 109.46777 * 90.00674 * 15 13 12
17 17 H 1.48493 * 109.47202 * 210.00224 * 15 13 12
18 18 H 1.48499 * 109.47179 * 330.00439 * 15 13 12
19 19 C 1.51269 * 118.30280 * 51.34216 * 12 11 10
20 20 C 1.52954 * 109.41112 * 293.75805 * 8 7 6
21 21 H 1.08999 * 109.47308 * 297.75193 * 1 2 3
22 22 H 1.09003 * 109.47126 * 57.74955 * 1 2 3
23 23 H 1.09002 * 109.47036 * 177.75095 * 1 2 3
24 24 H 1.09002 * 110.98970 * 322.19251 * 4 2 1
25 25 H 1.09007 * 110.99120 * 86.00884 * 4 2 1
26 26 H 1.08997 * 110.68043 * 277.17494 * 5 4 2
27 27 H 1.09005 * 110.84384 * 153.86331 * 5 4 2
28 28 H 1.08997 * 109.88925 * 218.40771 * 6 5 4
29 29 H 1.09002 * 109.89243 * 97.37958 * 6 5 4
30 30 H 1.09001 * 109.48001 * 303.68032 * 10 8 7
31 31 H 1.08998 * 109.48393 * 63.72583 * 10 8 7
32 32 H 1.08997 * 109.62777 * 185.65640 * 11 10 8
33 33 H 1.09002 * 109.78132 * 65.17938 * 11 10 8
34 34 H 0.96998 * 119.99693 * 180.02562 * 14 13 12
35 35 H 1.08995 * 109.62297 * 188.93880 * 19 12 11
36 36 H 1.09000 * 109.62353 * 68.36819 * 19 12 11
37 37 H 1.09001 * 109.48604 * 296.27466 * 20 8 7
38 38 H 1.09000 * 109.48219 * 56.32118 * 20 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0221 0.0000
4 6 2.0693 -0.7776 -1.2263
5 6 3.4804 -1.2041 -0.7348
6 6 3.2536 -1.4798 0.7664
7 7 2.0447 -0.7396 1.1722
8 6 2.3357 0.1743 2.2850
9 1 3.1747 0.8163 2.0166
10 6 1.1059 1.0389 2.5677
11 6 1.4391 2.0544 3.6656
12 6 1.9648 1.3054 4.8701
13 6 1.4337 1.5213 6.1240
14 7 1.9038 0.8612 7.1599
15 14 0.0464 2.7513 6.3517
16 1 -1.2585 2.0611 6.1900
17 1 0.1280 3.3436 7.7109
18 1 0.1667 3.8270 5.3350
19 6 3.0883 0.3137 4.6638
20 6 2.6952 -0.6387 3.5297
21 1 -0.3634 0.4785 0.9094
22 1 -0.3633 0.5484 -0.8691
23 1 -0.3633 -1.0269 -0.0403
24 1 1.4515 -1.6504 -1.4378
25 1 2.1389 -0.1294 -2.1000
26 1 4.1974 -0.3949 -0.8740
27 1 3.8129 -2.1072 -1.2466
28 1 4.1118 -1.1318 1.3412
29 1 3.1066 -2.5475 0.9294
30 1 0.8165 1.5673 1.6594
31 1 0.2833 0.4042 2.8972
32 1 0.5394 2.6047 3.9407
33 1 2.1982 2.7497 3.3070
34 1 1.5299 1.0128 8.0419
35 1 3.2481 -0.2543 5.5802
36 1 4.0012 0.8454 4.3955
37 1 1.8350 -1.2337 3.8364
38 1 3.5322 -1.2992 3.3032
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885610304.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:36
Heat of formation + Delta-G solvation = -15.076631 kcal
Electronic energy + Delta-G solvation = -16341.750950 eV
Core-core repulsion = 13989.984023 eV
Total energy + Delta-G solvation = -2351.766927 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.30130 -35.97256 -32.50409 -31.55855 -30.26050 -29.21511 -26.52143 -25.34137
-21.93366 -21.89296 -20.14733 -19.70306 -19.02670 -16.32651 -15.68833 -15.15491
-14.37255 -13.74139 -13.71191 -13.04206 -12.96708 -12.55911 -12.27326 -12.23018
-12.14415 -11.71299 -11.38672 -11.13855 -10.87310 -10.71200 -10.54139 -10.51301
-10.49260 -10.23144 -9.96355 -9.83070 -9.42068 -8.81770 -8.48737 -8.40852
-7.78116 -6.04584 -3.94361 3.30200 3.38454 3.39974 4.36143 4.42819
4.84209 4.87018 5.13621 5.24460 5.47342 5.61324 5.73566 5.78078
5.85711 5.87667 5.93547 6.06094 6.09053 6.13865 6.28082 6.34991
6.41198 6.51223 6.65133 6.78030 6.87289 6.97725 7.02825 7.11549
7.15706 7.49165 7.57275 7.69581 7.79086 7.85169 7.93537 8.46138
9.03209 9.60439 11.05312
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.042457 B = 0.008287 C = 0.007281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.325981 B = 3377.798366 C = 3844.697981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.069 3.931
3 H 0.050 0.950
4 C -0.125 4.125
5 C -0.142 4.142
6 C 0.044 3.956
7 N -0.526 5.526
8 C 0.097 3.903
9 H 0.027 0.973
10 C -0.103 4.103
11 C -0.016 4.016
12 C -0.484 4.484
13 C 0.074 3.926
14 N -0.892 5.892
15 Si 0.887 3.113
16 H -0.278 1.278
17 H -0.291 1.291
18 H -0.268 1.268
19 C 0.010 3.990
20 C -0.096 4.096
21 H 0.070 0.930
22 H 0.047 0.953
23 H 0.056 0.944
24 H 0.072 0.928
25 H 0.065 0.935
26 H 0.062 0.938
27 H 0.068 0.932
28 H 0.055 0.945
29 H 0.070 0.930
30 H 0.037 0.963
31 H 0.059 0.941
32 H 0.029 0.971
33 H 0.013 0.987
34 H 0.263 0.737
35 H 0.057 0.943
36 H -0.001 1.001
37 H 0.055 0.945
38 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.045 -2.313 -13.534 13.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.039 4.039
3 H 0.069 0.931
4 C -0.163 4.163
5 C -0.181 4.181
6 C -0.084 4.084
7 N -0.250 5.250
8 C -0.011 4.011
9 H 0.045 0.955
10 C -0.141 4.141
11 C -0.054 4.054
12 C -0.503 4.503
13 C -0.128 4.128
14 N -0.530 5.530
15 Si 0.716 3.284
16 H -0.204 1.204
17 H -0.217 1.217
18 H -0.193 1.193
19 C -0.028 4.028
20 C -0.135 4.135
21 H 0.088 0.912
22 H 0.066 0.934
23 H 0.075 0.925
24 H 0.091 0.909
25 H 0.084 0.916
26 H 0.081 0.919
27 H 0.087 0.913
28 H 0.073 0.927
29 H 0.088 0.912
30 H 0.055 0.945
31 H 0.077 0.923
32 H 0.048 0.952
33 H 0.031 0.969
34 H 0.073 0.927
35 H 0.076 0.924
36 H 0.018 0.982
37 H 0.074 0.926
38 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -0.437 -2.691 -13.140 13.420
hybrid contribution -0.097 1.175 -0.038 1.179
sum -0.535 -1.516 -13.179 13.276
Atomic orbital electron populations
1.21938 0.94372 1.01939 1.01759 1.22466 0.95987 0.95985 0.89454
0.93148 1.22796 0.96096 1.00089 0.97288 1.22827 0.97229 1.01120
0.96908 1.22747 0.92505 0.99448 0.93741 1.63655 1.28137 1.26974
1.06272 1.21713 0.96714 0.92238 0.90402 0.95515 1.21835 0.96859
0.97722 0.97684 1.19764 0.96406 0.94466 0.94777 1.20045 1.17735
1.21682 0.90877 1.24846 0.96681 0.95745 0.95513 1.69842 1.42229
1.41421 0.99473 0.86672 0.82753 0.82111 0.76890 1.20413 1.21709
1.19308 1.19388 0.94557 0.94233 0.94652 1.21669 0.99009 0.97734
0.95047 0.91153 0.93370 0.92486 0.90950 0.91591 0.91929 0.91286
0.92702 0.91185 0.94495 0.92256 0.95225 0.96852 0.92690 0.92425
0.98217 0.92573 0.95409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.00 9.09 37.16 0.34 -1.67 16
2 C 0.07 1.04 2.39 -66.19 -0.16 0.88 16
3 H 0.05 0.80 7.25 -51.93 -0.38 0.42 16
4 C -0.12 -1.52 6.50 -24.46 -0.16 -1.68 16
5 C -0.14 -1.75 6.97 -24.77 -0.17 -1.92 16
6 C 0.04 0.66 6.11 -2.84 -0.02 0.64 16
7 N -0.53 -9.10 4.70 -215.53 -1.01 -10.11 16
8 C 0.10 1.95 1.43 -67.75 -0.10 1.85 16
9 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16
10 C -0.10 -2.16 3.85 -26.63 -0.10 -2.26 16
11 C -0.02 -0.38 5.59 -27.49 -0.15 -0.54 16
12 C -0.48 -13.06 5.51 -98.92 -0.55 -13.60 16
13 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16
14 N -0.89 -26.16 12.73 55.43 0.71 -25.46 16
15 Si 0.89 21.52 27.27 -169.99 -4.64 16.89 16
16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
18 H -0.27 -6.30 6.46 56.52 0.37 -5.93 16
19 C 0.01 0.25 5.97 -27.48 -0.16 0.08 16
20 C -0.10 -2.14 5.24 -26.63 -0.14 -2.28 16
21 H 0.07 1.10 5.26 -51.93 -0.27 0.82 16
22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16
24 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16
25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
28 H 0.05 0.87 6.75 -51.93 -0.35 0.52 16
29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
30 H 0.04 0.69 5.30 -51.93 -0.28 0.42 16
31 H 0.06 1.30 7.81 -51.93 -0.41 0.90 16
32 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16
33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16
34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
35 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16
36 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16
37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
38 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16
LS Contribution 278.17 15.07 4.19 4.19
Total: -1.00 -28.23 278.17 -8.68 -36.91
By element:
Atomic # 1 Polarization: 2.57 SS G_CDS: -6.46 Total: -3.90 kcal
Atomic # 6 Polarization: -17.05 SS G_CDS: -1.47 Total: -18.52 kcal
Atomic # 7 Polarization: -35.26 SS G_CDS: -0.31 Total: -35.57 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -4.64 Total: 16.89 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -28.23 -8.68 -36.91 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885610304.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.831 kcal
(2) G-P(sol) polarization free energy of solvation -28.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds