Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.33351 * 2 1 4 4 C 1.54900 * 110.37650 * 237.62311 * 2 1 3 5 5 C 1.55398 * 101.74345 * 204.18894 * 4 2 1 6 6 C 1.54311 * 102.89991 * 35.48061 * 5 4 2 7 7 N 1.47446 * 107.37167 * 337.89633 * 6 5 4 8 8 C 1.46904 * 110.99780 * 236.66274 * 7 6 5 9 9 H 1.09004 * 109.41363 * 53.62237 * 8 7 6 10 10 C 1.52962 * 109.41142 * 173.40759 * 8 7 6 11 11 C 1.53226 * 109.40523 * 183.70288 * 10 8 7 12 12 C 1.51270 * 108.53707 * 305.37615 * 11 10 8 13 13 C 1.37879 * 120.84712 * 231.32802 * 12 11 10 14 14 N 1.31515 * 119.99849 * 180.02562 * 13 12 11 15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 12 11 16 16 H 1.48500 * 109.46777 * 90.00674 * 15 13 12 17 17 H 1.48493 * 109.47202 * 210.00224 * 15 13 12 18 18 H 1.48499 * 109.47179 * 330.00439 * 15 13 12 19 19 C 1.51269 * 118.30280 * 51.34216 * 12 11 10 20 20 C 1.52954 * 109.41112 * 293.75805 * 8 7 6 21 21 H 1.08999 * 109.47308 * 297.75193 * 1 2 3 22 22 H 1.09003 * 109.47126 * 57.74955 * 1 2 3 23 23 H 1.09002 * 109.47036 * 177.75095 * 1 2 3 24 24 H 1.09002 * 110.98970 * 322.19251 * 4 2 1 25 25 H 1.09007 * 110.99120 * 86.00884 * 4 2 1 26 26 H 1.08997 * 110.68043 * 277.17494 * 5 4 2 27 27 H 1.09005 * 110.84384 * 153.86331 * 5 4 2 28 28 H 1.08997 * 109.88925 * 218.40771 * 6 5 4 29 29 H 1.09002 * 109.89243 * 97.37958 * 6 5 4 30 30 H 1.09001 * 109.48001 * 303.68032 * 10 8 7 31 31 H 1.08998 * 109.48393 * 63.72583 * 10 8 7 32 32 H 1.08997 * 109.62777 * 185.65640 * 11 10 8 33 33 H 1.09002 * 109.78132 * 65.17938 * 11 10 8 34 34 H 0.96998 * 119.99693 * 180.02562 * 14 13 12 35 35 H 1.08995 * 109.62297 * 188.93880 * 19 12 11 36 36 H 1.09000 * 109.62353 * 68.36819 * 19 12 11 37 37 H 1.09001 * 109.48604 * 296.27466 * 20 8 7 38 38 H 1.09000 * 109.48219 * 56.32118 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7776 -1.2263 5 6 3.4804 -1.2041 -0.7348 6 6 3.2536 -1.4798 0.7664 7 7 2.0447 -0.7396 1.1722 8 6 2.3357 0.1743 2.2850 9 1 3.1747 0.8163 2.0166 10 6 1.1059 1.0389 2.5677 11 6 1.4391 2.0544 3.6656 12 6 1.9648 1.3054 4.8701 13 6 1.4337 1.5213 6.1240 14 7 1.9038 0.8612 7.1599 15 14 0.0464 2.7513 6.3517 16 1 -1.2585 2.0611 6.1900 17 1 0.1280 3.3436 7.7109 18 1 0.1667 3.8270 5.3350 19 6 3.0883 0.3137 4.6638 20 6 2.6952 -0.6387 3.5297 21 1 -0.3634 0.4785 0.9094 22 1 -0.3633 0.5484 -0.8691 23 1 -0.3633 -1.0269 -0.0403 24 1 1.4515 -1.6504 -1.4378 25 1 2.1389 -0.1294 -2.1000 26 1 4.1974 -0.3949 -0.8740 27 1 3.8129 -2.1072 -1.2466 28 1 4.1118 -1.1318 1.3412 29 1 3.1066 -2.5475 0.9294 30 1 0.8165 1.5673 1.6594 31 1 0.2833 0.4042 2.8972 32 1 0.5394 2.6047 3.9407 33 1 2.1982 2.7497 3.3070 34 1 1.5299 1.0128 8.0419 35 1 3.2481 -0.2543 5.5802 36 1 4.0012 0.8454 4.3955 37 1 1.8350 -1.2337 3.8364 38 1 3.5322 -1.2992 3.3032 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885610304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -15.076631 kcal Electronic energy + Delta-G solvation = -16341.750950 eV Core-core repulsion = 13989.984023 eV Total energy + Delta-G solvation = -2351.766927 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30130 -35.97256 -32.50409 -31.55855 -30.26050 -29.21511 -26.52143 -25.34137 -21.93366 -21.89296 -20.14733 -19.70306 -19.02670 -16.32651 -15.68833 -15.15491 -14.37255 -13.74139 -13.71191 -13.04206 -12.96708 -12.55911 -12.27326 -12.23018 -12.14415 -11.71299 -11.38672 -11.13855 -10.87310 -10.71200 -10.54139 -10.51301 -10.49260 -10.23144 -9.96355 -9.83070 -9.42068 -8.81770 -8.48737 -8.40852 -7.78116 -6.04584 -3.94361 3.30200 3.38454 3.39974 4.36143 4.42819 4.84209 4.87018 5.13621 5.24460 5.47342 5.61324 5.73566 5.78078 5.85711 5.87667 5.93547 6.06094 6.09053 6.13865 6.28082 6.34991 6.41198 6.51223 6.65133 6.78030 6.87289 6.97725 7.02825 7.11549 7.15706 7.49165 7.57275 7.69581 7.79086 7.85169 7.93537 8.46138 9.03209 9.60439 11.05312 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.008287 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.325981 B = 3377.798366 C = 3844.697981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.050 0.950 4 C -0.125 4.125 5 C -0.142 4.142 6 C 0.044 3.956 7 N -0.526 5.526 8 C 0.097 3.903 9 H 0.027 0.973 10 C -0.103 4.103 11 C -0.016 4.016 12 C -0.484 4.484 13 C 0.074 3.926 14 N -0.892 5.892 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.268 1.268 19 C 0.010 3.990 20 C -0.096 4.096 21 H 0.070 0.930 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.057 0.943 36 H -0.001 1.001 37 H 0.055 0.945 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -2.313 -13.534 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.069 0.931 4 C -0.163 4.163 5 C -0.181 4.181 6 C -0.084 4.084 7 N -0.250 5.250 8 C -0.011 4.011 9 H 0.045 0.955 10 C -0.141 4.141 11 C -0.054 4.054 12 C -0.503 4.503 13 C -0.128 4.128 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.193 1.193 19 C -0.028 4.028 20 C -0.135 4.135 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.437 -2.691 -13.140 13.420 hybrid contribution -0.097 1.175 -0.038 1.179 sum -0.535 -1.516 -13.179 13.276 Atomic orbital electron populations 1.21938 0.94372 1.01939 1.01759 1.22466 0.95987 0.95985 0.89454 0.93148 1.22796 0.96096 1.00089 0.97288 1.22827 0.97229 1.01120 0.96908 1.22747 0.92505 0.99448 0.93741 1.63655 1.28137 1.26974 1.06272 1.21713 0.96714 0.92238 0.90402 0.95515 1.21835 0.96859 0.97722 0.97684 1.19764 0.96406 0.94466 0.94777 1.20045 1.17735 1.21682 0.90877 1.24846 0.96681 0.95745 0.95513 1.69842 1.42229 1.41421 0.99473 0.86672 0.82753 0.82111 0.76890 1.20413 1.21709 1.19308 1.19388 0.94557 0.94233 0.94652 1.21669 0.99009 0.97734 0.95047 0.91153 0.93370 0.92486 0.90950 0.91591 0.91929 0.91286 0.92702 0.91185 0.94495 0.92256 0.95225 0.96852 0.92690 0.92425 0.98217 0.92573 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.09 37.16 0.34 -1.67 16 2 C 0.07 1.04 2.39 -66.19 -0.16 0.88 16 3 H 0.05 0.80 7.25 -51.93 -0.38 0.42 16 4 C -0.12 -1.52 6.50 -24.46 -0.16 -1.68 16 5 C -0.14 -1.75 6.97 -24.77 -0.17 -1.92 16 6 C 0.04 0.66 6.11 -2.84 -0.02 0.64 16 7 N -0.53 -9.10 4.70 -215.53 -1.01 -10.11 16 8 C 0.10 1.95 1.43 -67.75 -0.10 1.85 16 9 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 10 C -0.10 -2.16 3.85 -26.63 -0.10 -2.26 16 11 C -0.02 -0.38 5.59 -27.49 -0.15 -0.54 16 12 C -0.48 -13.06 5.51 -98.92 -0.55 -13.60 16 13 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 14 N -0.89 -26.16 12.73 55.43 0.71 -25.46 16 15 Si 0.89 21.52 27.27 -169.99 -4.64 16.89 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.30 6.46 56.52 0.37 -5.93 16 19 C 0.01 0.25 5.97 -27.48 -0.16 0.08 16 20 C -0.10 -2.14 5.24 -26.63 -0.14 -2.28 16 21 H 0.07 1.10 5.26 -51.93 -0.27 0.82 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.87 6.75 -51.93 -0.35 0.52 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.69 5.30 -51.93 -0.28 0.42 16 31 H 0.06 1.30 7.81 -51.93 -0.41 0.90 16 32 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16 36 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -28.23 278.17 -8.68 -36.91 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.46 Total: -3.90 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.47 Total: -18.52 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.31 Total: -35.57 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.64 Total: 16.89 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.23 -8.68 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885610304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.831 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds