Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.33351 * 2 1 4 4 C 1.54900 * 110.37650 * 237.62311 * 2 1 3 5 5 C 1.55398 * 101.74345 * 204.18894 * 4 2 1 6 6 C 1.54311 * 102.89991 * 35.48061 * 5 4 2 7 7 N 1.47446 * 107.37167 * 337.89633 * 6 5 4 8 8 C 1.46904 * 110.99780 * 236.66274 * 7 6 5 9 9 H 1.09004 * 109.41363 * 53.62237 * 8 7 6 10 10 C 1.52962 * 109.41142 * 173.40759 * 8 7 6 11 11 C 1.53226 * 109.40523 * 183.70288 * 10 8 7 12 12 C 1.51270 * 108.53707 * 305.37615 * 11 10 8 13 13 C 1.37879 * 120.84712 * 231.32802 * 12 11 10 14 14 N 1.31515 * 119.99849 * 180.02562 * 13 12 11 15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 12 11 16 16 H 1.48500 * 109.46777 * 90.00674 * 15 13 12 17 17 H 1.48493 * 109.47202 * 210.00224 * 15 13 12 18 18 H 1.48499 * 109.47179 * 330.00439 * 15 13 12 19 19 C 1.51269 * 118.30280 * 51.34216 * 12 11 10 20 20 C 1.52954 * 109.41112 * 293.75805 * 8 7 6 21 21 H 1.08999 * 109.47308 * 297.75193 * 1 2 3 22 22 H 1.09003 * 109.47126 * 57.74955 * 1 2 3 23 23 H 1.09002 * 109.47036 * 177.75095 * 1 2 3 24 24 H 1.09002 * 110.98970 * 322.19251 * 4 2 1 25 25 H 1.09007 * 110.99120 * 86.00884 * 4 2 1 26 26 H 1.08997 * 110.68043 * 277.17494 * 5 4 2 27 27 H 1.09005 * 110.84384 * 153.86331 * 5 4 2 28 28 H 1.08997 * 109.88925 * 218.40771 * 6 5 4 29 29 H 1.09002 * 109.89243 * 97.37958 * 6 5 4 30 30 H 1.09001 * 109.48001 * 303.68032 * 10 8 7 31 31 H 1.08998 * 109.48393 * 63.72583 * 10 8 7 32 32 H 1.08997 * 109.62777 * 185.65640 * 11 10 8 33 33 H 1.09002 * 109.78132 * 65.17938 * 11 10 8 34 34 H 0.96998 * 119.99693 * 180.02562 * 14 13 12 35 35 H 1.08995 * 109.62297 * 188.93880 * 19 12 11 36 36 H 1.09000 * 109.62353 * 68.36819 * 19 12 11 37 37 H 1.09001 * 109.48604 * 296.27466 * 20 8 7 38 38 H 1.09000 * 109.48219 * 56.32118 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7776 -1.2263 5 6 3.4804 -1.2041 -0.7348 6 6 3.2536 -1.4798 0.7664 7 7 2.0447 -0.7396 1.1722 8 6 2.3357 0.1743 2.2850 9 1 3.1747 0.8163 2.0166 10 6 1.1059 1.0389 2.5677 11 6 1.4391 2.0544 3.6656 12 6 1.9648 1.3054 4.8701 13 6 1.4337 1.5213 6.1240 14 7 1.9038 0.8612 7.1599 15 14 0.0464 2.7513 6.3517 16 1 -1.2585 2.0611 6.1900 17 1 0.1280 3.3436 7.7109 18 1 0.1667 3.8270 5.3350 19 6 3.0883 0.3137 4.6638 20 6 2.6952 -0.6387 3.5297 21 1 -0.3634 0.4785 0.9094 22 1 -0.3633 0.5484 -0.8691 23 1 -0.3633 -1.0269 -0.0403 24 1 1.4515 -1.6504 -1.4378 25 1 2.1389 -0.1294 -2.1000 26 1 4.1974 -0.3949 -0.8740 27 1 3.8129 -2.1072 -1.2466 28 1 4.1118 -1.1318 1.3412 29 1 3.1066 -2.5475 0.9294 30 1 0.8165 1.5673 1.6594 31 1 0.2833 0.4042 2.8972 32 1 0.5394 2.6047 3.9407 33 1 2.1982 2.7497 3.3070 34 1 1.5299 1.0128 8.0419 35 1 3.2481 -0.2543 5.5802 36 1 4.0012 0.8454 4.3955 37 1 1.8350 -1.2337 3.8364 38 1 3.5322 -1.2992 3.3032 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885610304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -31.879581 kcal Electronic energy + Delta-G solvation = -16342.479580 eV Core-core repulsion = 13989.984023 eV Total energy + Delta-G solvation = -2352.495557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65118 -37.66418 -34.37157 -32.84270 -31.82610 -30.98130 -28.23296 -26.47309 -23.78594 -23.53690 -21.49111 -21.09992 -20.62561 -18.14962 -17.15900 -16.44595 -16.27195 -15.30687 -14.90853 -14.75790 -14.51595 -14.09212 -14.00625 -13.89380 -13.57919 -13.11050 -12.81269 -12.72139 -12.48849 -12.16017 -12.05897 -11.97392 -11.80995 -11.75460 -11.55439 -11.43373 -11.24675 -10.75145 -10.54843 -10.38280 -9.13535 -8.16949 -6.10806 1.37853 1.39596 1.49103 2.40572 3.00419 3.18441 3.77258 3.80973 4.07612 4.19581 4.24507 4.35014 4.55533 4.56796 4.63901 4.75232 4.86507 4.88064 4.94154 4.98972 5.02008 5.04767 5.10277 5.14504 5.19591 5.23989 5.27002 5.31803 5.40956 5.53487 5.60408 5.62206 5.76623 5.89251 6.28233 6.34850 6.37075 6.95068 7.46635 8.94525 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.008287 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.325981 B = 3377.798366 C = 3844.697981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.044 0.956 4 C -0.116 4.116 5 C -0.135 4.135 6 C 0.037 3.963 7 N -0.536 5.536 8 C 0.108 3.892 9 H 0.019 0.981 10 C -0.094 4.094 11 C -0.019 4.019 12 C -0.498 4.498 13 C 0.018 3.982 14 N -0.934 5.934 15 Si 0.943 3.057 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.252 1.252 19 C 0.007 3.993 20 C -0.084 4.084 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.016 0.984 34 H 0.262 0.738 35 H 0.024 0.976 36 H -0.005 1.005 37 H 0.036 0.964 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -1.945 -16.326 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.062 0.938 4 C -0.154 4.154 5 C -0.173 4.173 6 C -0.091 4.091 7 N -0.261 5.261 8 C 0.000 4.000 9 H 0.037 0.963 10 C -0.131 4.131 11 C -0.057 4.057 12 C -0.517 4.517 13 C -0.180 4.180 14 N -0.574 5.574 15 Si 0.769 3.231 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.177 1.177 19 C -0.031 4.031 20 C -0.123 4.123 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.013 0.987 37 H 0.055 0.945 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.165 -2.321 -15.961 16.171 hybrid contribution 0.202 1.010 0.812 1.312 sum -0.962 -1.311 -15.149 15.236 Atomic orbital electron populations 1.21907 0.93714 1.02161 1.01937 1.22627 0.96517 0.95819 0.89692 0.93830 1.22776 0.95634 1.00339 0.96601 1.22800 0.97566 1.02337 0.94598 1.22839 0.91165 0.99212 0.95906 1.63593 1.29251 1.26525 1.06706 1.21418 0.95967 0.92047 0.90594 0.96290 1.21706 0.96691 0.97059 0.97687 1.19794 0.96415 0.94972 0.94480 1.20663 1.17494 1.21529 0.92064 1.25667 0.99259 0.97660 0.95414 1.69985 1.44043 1.43479 0.99914 0.85765 0.79932 0.80356 0.77029 1.19895 1.21773 1.17658 1.19346 0.94501 0.94633 0.94632 1.21454 0.98645 0.97137 0.95037 0.93051 0.90872 0.92466 0.90207 0.89356 0.91610 0.89044 0.93957 0.90845 0.91780 0.93529 0.94882 0.96556 0.92851 0.95717 0.98682 0.94503 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.09 71.98 0.65 -2.86 16 2 C 0.06 1.65 2.39 45.38 0.11 1.76 16 3 H 0.04 1.25 7.25 -2.39 -0.02 1.23 16 4 C -0.12 -2.36 6.50 32.07 0.21 -2.15 16 5 C -0.13 -2.84 6.97 31.86 0.22 -2.62 16 6 C 0.04 1.03 6.11 86.64 0.53 1.56 16 7 N -0.54 -17.59 4.70 -835.80 -3.93 -21.52 16 8 C 0.11 4.26 1.43 44.89 0.06 4.32 16 9 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 10 C -0.09 -3.80 3.85 30.66 0.12 -3.68 16 11 C -0.02 -0.87 5.59 30.10 0.17 -0.70 16 12 C -0.50 -27.22 5.51 -16.17 -0.09 -27.31 16 13 C 0.02 1.00 5.46 84.65 0.46 1.46 16 14 N -0.93 -56.60 12.73 21.45 0.27 -56.33 16 15 Si 0.94 44.29 27.27 68.60 1.87 46.16 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.25 -11.11 6.46 99.48 0.64 -10.46 16 19 C 0.01 0.36 5.97 30.11 0.18 0.54 16 20 C -0.08 -3.80 5.24 30.66 0.16 -3.64 16 21 H 0.05 1.48 5.26 -2.39 -0.01 1.47 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 24 H 0.08 1.54 8.05 -2.39 -0.02 1.53 16 25 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.04 1.29 6.75 -2.39 -0.02 1.27 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 2.26 5.30 -2.39 -0.01 2.25 16 31 H 0.05 2.01 7.81 -2.39 -0.02 1.99 16 32 H 0.03 1.50 4.78 -2.39 -0.01 1.49 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.02 1.43 7.07 -2.39 -0.02 1.42 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.74 6.81 -2.39 -0.02 1.73 16 Total: -1.00 -61.35 278.17 1.95 -59.40 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.95 Total: 5.61 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 2.79 Total: -33.32 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.66 Total: -77.86 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.87 Total: 46.16 kcal Total: -61.35 1.95 -59.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885610304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal (2) G-P(sol) polarization free energy of solvation -61.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds