Wall clock time and date at job start Mon Mar 30 2020 03:41:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 110.33351 * 2 1
4 4 C 1.54900 * 110.37650 * 237.62311 * 2 1 3
5 5 C 1.55398 * 101.74345 * 204.18894 * 4 2 1
6 6 C 1.54311 * 102.89991 * 35.48061 * 5 4 2
7 7 N 1.47446 * 107.37167 * 337.89633 * 6 5 4
8 8 C 1.46904 * 110.99780 * 236.66274 * 7 6 5
9 9 H 1.09004 * 109.41363 * 53.62237 * 8 7 6
10 10 C 1.52962 * 109.41142 * 173.40759 * 8 7 6
11 11 C 1.53226 * 109.40523 * 183.70288 * 10 8 7
12 12 C 1.51270 * 108.53707 * 305.37615 * 11 10 8
13 13 C 1.37879 * 120.84712 * 231.32802 * 12 11 10
14 14 N 1.31515 * 119.99849 * 180.02562 * 13 12 11
15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 12 11
16 16 H 1.48500 * 109.46777 * 90.00674 * 15 13 12
17 17 H 1.48493 * 109.47202 * 210.00224 * 15 13 12
18 18 H 1.48499 * 109.47179 * 330.00439 * 15 13 12
19 19 C 1.51269 * 118.30280 * 51.34216 * 12 11 10
20 20 C 1.52954 * 109.41112 * 293.75805 * 8 7 6
21 21 H 1.08999 * 109.47308 * 297.75193 * 1 2 3
22 22 H 1.09003 * 109.47126 * 57.74955 * 1 2 3
23 23 H 1.09002 * 109.47036 * 177.75095 * 1 2 3
24 24 H 1.09002 * 110.98970 * 322.19251 * 4 2 1
25 25 H 1.09007 * 110.99120 * 86.00884 * 4 2 1
26 26 H 1.08997 * 110.68043 * 277.17494 * 5 4 2
27 27 H 1.09005 * 110.84384 * 153.86331 * 5 4 2
28 28 H 1.08997 * 109.88925 * 218.40771 * 6 5 4
29 29 H 1.09002 * 109.89243 * 97.37958 * 6 5 4
30 30 H 1.09001 * 109.48001 * 303.68032 * 10 8 7
31 31 H 1.08998 * 109.48393 * 63.72583 * 10 8 7
32 32 H 1.08997 * 109.62777 * 185.65640 * 11 10 8
33 33 H 1.09002 * 109.78132 * 65.17938 * 11 10 8
34 34 H 0.96998 * 119.99693 * 180.02562 * 14 13 12
35 35 H 1.08995 * 109.62297 * 188.93880 * 19 12 11
36 36 H 1.09000 * 109.62353 * 68.36819 * 19 12 11
37 37 H 1.09001 * 109.48604 * 296.27466 * 20 8 7
38 38 H 1.09000 * 109.48219 * 56.32118 * 20 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0221 0.0000
4 6 2.0693 -0.7776 -1.2263
5 6 3.4804 -1.2041 -0.7348
6 6 3.2536 -1.4798 0.7664
7 7 2.0447 -0.7396 1.1722
8 6 2.3357 0.1743 2.2850
9 1 3.1747 0.8163 2.0166
10 6 1.1059 1.0389 2.5677
11 6 1.4391 2.0544 3.6656
12 6 1.9648 1.3054 4.8701
13 6 1.4337 1.5213 6.1240
14 7 1.9038 0.8612 7.1599
15 14 0.0464 2.7513 6.3517
16 1 -1.2585 2.0611 6.1900
17 1 0.1280 3.3436 7.7109
18 1 0.1667 3.8270 5.3350
19 6 3.0883 0.3137 4.6638
20 6 2.6952 -0.6387 3.5297
21 1 -0.3634 0.4785 0.9094
22 1 -0.3633 0.5484 -0.8691
23 1 -0.3633 -1.0269 -0.0403
24 1 1.4515 -1.6504 -1.4378
25 1 2.1389 -0.1294 -2.1000
26 1 4.1974 -0.3949 -0.8740
27 1 3.8129 -2.1072 -1.2466
28 1 4.1118 -1.1318 1.3412
29 1 3.1066 -2.5475 0.9294
30 1 0.8165 1.5673 1.6594
31 1 0.2833 0.4042 2.8972
32 1 0.5394 2.6047 3.9407
33 1 2.1982 2.7497 3.3070
34 1 1.5299 1.0128 8.0419
35 1 3.2481 -0.2543 5.5802
36 1 4.0012 0.8454 4.3955
37 1 1.8350 -1.2337 3.8364
38 1 3.5322 -1.2992 3.3032
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885610304.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:36
Heat of formation + Delta-G solvation = -31.879581 kcal
Electronic energy + Delta-G solvation = -16342.479580 eV
Core-core repulsion = 13989.984023 eV
Total energy + Delta-G solvation = -2352.495557 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.65118 -37.66418 -34.37157 -32.84270 -31.82610 -30.98130 -28.23296 -26.47309
-23.78594 -23.53690 -21.49111 -21.09992 -20.62561 -18.14962 -17.15900 -16.44595
-16.27195 -15.30687 -14.90853 -14.75790 -14.51595 -14.09212 -14.00625 -13.89380
-13.57919 -13.11050 -12.81269 -12.72139 -12.48849 -12.16017 -12.05897 -11.97392
-11.80995 -11.75460 -11.55439 -11.43373 -11.24675 -10.75145 -10.54843 -10.38280
-9.13535 -8.16949 -6.10806 1.37853 1.39596 1.49103 2.40572 3.00419
3.18441 3.77258 3.80973 4.07612 4.19581 4.24507 4.35014 4.55533
4.56796 4.63901 4.75232 4.86507 4.88064 4.94154 4.98972 5.02008
5.04767 5.10277 5.14504 5.19591 5.23989 5.27002 5.31803 5.40956
5.53487 5.60408 5.62206 5.76623 5.89251 6.28233 6.34850 6.37075
6.95068 7.46635 8.94525
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.042457 B = 0.008287 C = 0.007281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.325981 B = 3377.798366 C = 3844.697981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.061 3.939
3 H 0.044 0.956
4 C -0.116 4.116
5 C -0.135 4.135
6 C 0.037 3.963
7 N -0.536 5.536
8 C 0.108 3.892
9 H 0.019 0.981
10 C -0.094 4.094
11 C -0.019 4.019
12 C -0.498 4.498
13 C 0.018 3.982
14 N -0.934 5.934
15 Si 0.943 3.057
16 H -0.273 1.273
17 H -0.291 1.291
18 H -0.252 1.252
19 C 0.007 3.993
20 C -0.084 4.084
21 H 0.051 0.949
22 H 0.072 0.928
23 H 0.056 0.944
24 H 0.079 0.921
25 H 0.088 0.912
26 H 0.065 0.935
27 H 0.091 0.909
28 H 0.042 0.958
29 H 0.073 0.927
30 H 0.064 0.936
31 H 0.046 0.954
32 H 0.033 0.967
33 H 0.016 0.984
34 H 0.262 0.738
35 H 0.024 0.976
36 H -0.005 1.005
37 H 0.036 0.964
38 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.773 -1.945 -16.326 16.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.047 4.047
3 H 0.062 0.938
4 C -0.154 4.154
5 C -0.173 4.173
6 C -0.091 4.091
7 N -0.261 5.261
8 C 0.000 4.000
9 H 0.037 0.963
10 C -0.131 4.131
11 C -0.057 4.057
12 C -0.517 4.517
13 C -0.180 4.180
14 N -0.574 5.574
15 Si 0.769 3.231
16 H -0.199 1.199
17 H -0.218 1.218
18 H -0.177 1.177
19 C -0.031 4.031
20 C -0.123 4.123
21 H 0.069 0.931
22 H 0.091 0.909
23 H 0.075 0.925
24 H 0.098 0.902
25 H 0.106 0.894
26 H 0.084 0.916
27 H 0.110 0.890
28 H 0.060 0.940
29 H 0.092 0.908
30 H 0.082 0.918
31 H 0.065 0.935
32 H 0.051 0.949
33 H 0.034 0.966
34 H 0.071 0.929
35 H 0.043 0.957
36 H 0.013 0.987
37 H 0.055 0.945
38 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -1.165 -2.321 -15.961 16.171
hybrid contribution 0.202 1.010 0.812 1.312
sum -0.962 -1.311 -15.149 15.236
Atomic orbital electron populations
1.21907 0.93714 1.02161 1.01937 1.22627 0.96517 0.95819 0.89692
0.93830 1.22776 0.95634 1.00339 0.96601 1.22800 0.97566 1.02337
0.94598 1.22839 0.91165 0.99212 0.95906 1.63593 1.29251 1.26525
1.06706 1.21418 0.95967 0.92047 0.90594 0.96290 1.21706 0.96691
0.97059 0.97687 1.19794 0.96415 0.94972 0.94480 1.20663 1.17494
1.21529 0.92064 1.25667 0.99259 0.97660 0.95414 1.69985 1.44043
1.43479 0.99914 0.85765 0.79932 0.80356 0.77029 1.19895 1.21773
1.17658 1.19346 0.94501 0.94633 0.94632 1.21454 0.98645 0.97137
0.95037 0.93051 0.90872 0.92466 0.90207 0.89356 0.91610 0.89044
0.93957 0.90845 0.91780 0.93529 0.94882 0.96556 0.92851 0.95717
0.98682 0.94503 0.93950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.52 9.09 71.98 0.65 -2.86 16
2 C 0.06 1.65 2.39 45.38 0.11 1.76 16
3 H 0.04 1.25 7.25 -2.39 -0.02 1.23 16
4 C -0.12 -2.36 6.50 32.07 0.21 -2.15 16
5 C -0.13 -2.84 6.97 31.86 0.22 -2.62 16
6 C 0.04 1.03 6.11 86.64 0.53 1.56 16
7 N -0.54 -17.59 4.70 -835.80 -3.93 -21.52 16
8 C 0.11 4.26 1.43 44.89 0.06 4.32 16
9 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16
10 C -0.09 -3.80 3.85 30.66 0.12 -3.68 16
11 C -0.02 -0.87 5.59 30.10 0.17 -0.70 16
12 C -0.50 -27.22 5.51 -16.17 -0.09 -27.31 16
13 C 0.02 1.00 5.46 84.65 0.46 1.46 16
14 N -0.93 -56.60 12.73 21.45 0.27 -56.33 16
15 Si 0.94 44.29 27.27 68.60 1.87 46.16 16
16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16
17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16
18 H -0.25 -11.11 6.46 99.48 0.64 -10.46 16
19 C 0.01 0.36 5.97 30.11 0.18 0.54 16
20 C -0.08 -3.80 5.24 30.66 0.16 -3.64 16
21 H 0.05 1.48 5.26 -2.39 -0.01 1.47 16
22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
23 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16
24 H 0.08 1.54 8.05 -2.39 -0.02 1.53 16
25 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16
26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16
28 H 0.04 1.29 6.75 -2.39 -0.02 1.27 16
29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
30 H 0.06 2.26 5.30 -2.39 -0.01 2.25 16
31 H 0.05 2.01 7.81 -2.39 -0.02 1.99 16
32 H 0.03 1.50 4.78 -2.39 -0.01 1.49 16
33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
35 H 0.02 1.43 7.07 -2.39 -0.02 1.42 16
36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16
37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
38 H 0.04 1.74 6.81 -2.39 -0.02 1.73 16
Total: -1.00 -61.35 278.17 1.95 -59.40
By element:
Atomic # 1 Polarization: 4.66 SS G_CDS: 0.95 Total: 5.61 kcal
Atomic # 6 Polarization: -36.10 SS G_CDS: 2.79 Total: -33.32 kcal
Atomic # 7 Polarization: -74.20 SS G_CDS: -3.66 Total: -77.86 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 1.87 Total: 46.16 kcal
Total: -61.35 1.95 -59.40 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885610304.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal
(2) G-P(sol) polarization free energy of solvation -61.352 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds