Wall clock time and date at job start Mon Mar 30 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00001 * 2 1 4 4 C 1.52999 * 109.47162 * 293.95592 * 3 2 1 5 5 C 1.53782 * 113.61660 * 185.00270 * 4 3 2 6 6 C 1.53789 * 87.17167 * 220.05760 * 5 4 3 7 7 C 1.53786 * 87.08166 * 25.38925 * 6 5 4 8 8 C 1.46904 * 111.00279 * 123.95227 * 2 1 3 9 9 C 1.52998 * 109.46986 * 72.35779 * 8 2 1 10 10 C 1.50697 * 115.54932 * 54.97218 * 9 8 2 11 11 H 1.08001 * 120.00170 * 264.94105 * 10 9 8 12 12 C 1.37883 * 119.99978 * 84.94996 * 10 9 8 13 13 N 1.31508 * 119.99665 * 4.44578 * 12 10 9 14 14 Si 1.86794 * 119.99787 * 184.44777 * 12 10 9 15 15 H 1.48501 * 109.47183 * 90.00380 * 14 12 10 16 16 H 1.48501 * 109.47022 * 209.99896 * 14 12 10 17 17 H 1.48498 * 109.47487 * 329.99561 * 14 12 10 18 18 C 1.53003 * 117.49607 * 269.30397 * 9 8 2 19 19 C 1.53002 * 117.49893 * 200.64549 * 9 8 2 20 20 H 1.08999 * 109.47264 * 61.32586 * 1 2 3 21 21 H 1.08999 * 109.47263 * 181.32602 * 1 2 3 22 22 H 1.09005 * 109.47165 * 301.32430 * 1 2 3 23 23 H 1.09003 * 109.47521 * 173.95589 * 3 2 1 24 24 H 1.09002 * 109.47233 * 53.95278 * 3 2 1 25 25 H 1.08998 * 112.90761 * 316.24998 * 4 3 2 26 26 H 1.08994 * 113.62007 * 105.47055 * 5 4 3 27 27 H 1.09003 * 113.61385 * 334.64560 * 5 4 3 28 28 H 1.09003 * 113.61254 * 139.93587 * 6 5 4 29 29 H 1.08991 * 113.61254 * 270.84150 * 6 5 4 30 30 H 1.09000 * 113.61476 * 89.11186 * 7 6 5 31 31 H 1.08995 * 113.61155 * 219.94059 * 7 6 5 32 32 H 1.09003 * 109.47312 * 192.35896 * 8 2 1 33 33 H 1.09005 * 109.46735 * 312.35902 * 8 2 1 34 34 H 0.96998 * 119.99597 * 185.01087 * 13 12 10 35 35 H 1.08995 * 117.50103 * 359.97438 * 18 9 8 36 36 H 1.09004 * 117.49538 * 145.02410 * 18 9 8 37 37 H 1.08996 * 117.49553 * 214.97697 * 19 9 8 38 38 H 1.09000 * 117.49598 * 359.97267 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.2412 3.4608 -1.4713 6 6 0.9018 3.8920 -2.0920 7 6 0.2544 2.7458 -1.2971 8 6 1.9955 -0.7660 1.1376 9 6 1.7701 -2.2596 0.8948 10 6 2.3276 -2.7994 -0.3971 11 1 1.6938 -2.8770 -1.2681 12 6 3.6467 -3.1945 -0.4669 13 7 4.3947 -3.1828 0.6146 14 14 4.3712 -3.7463 -2.0978 15 1 4.9436 -2.5739 -2.8072 16 1 5.4411 -4.7462 -1.8512 17 1 3.3052 -4.3576 -2.9316 18 6 0.4658 -2.8704 1.4113 19 6 1.7893 -3.1843 2.1136 20 1 -0.3634 0.4931 -0.9016 21 1 -0.3634 -1.0274 0.0238 22 1 -0.3634 0.5343 0.8779 23 1 3.0797 1.3445 0.1082 24 1 1.5610 1.9274 0.8309 25 1 1.7861 1.4171 -2.1866 26 1 3.0781 3.4996 -2.1686 27 1 2.4591 3.9483 -0.5210 28 1 0.5731 4.8823 -1.7766 29 1 0.8568 3.7541 -3.1722 30 1 -0.0715 3.0366 -0.2985 31 1 -0.5135 2.2081 -1.8533 32 1 3.0629 -0.5720 1.2434 33 1 1.4792 -0.4640 2.0490 34 1 5.3402 -3.3906 0.5526 35 1 -0.2314 -2.2082 1.9245 36 1 0.0113 -3.6630 0.8169 37 1 2.2047 -4.1832 1.9809 38 1 1.9629 -2.7285 3.0884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:24 Heat of formation + Delta-G solvation = 29.138302 kcal Electronic energy + Delta-G solvation = -15920.041311 eV Core-core repulsion = 13570.191687 eV Total energy + Delta-G solvation = -2349.849624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19635 -38.77148 -36.21872 -33.85426 -29.52574 -28.63125 -27.33062 -26.26815 -24.83732 -22.85265 -22.01831 -20.89472 -20.14134 -17.90039 -16.95158 -16.53630 -16.06319 -15.95833 -15.59456 -15.11781 -14.68261 -14.13981 -13.68694 -13.30939 -13.19721 -13.14368 -12.82641 -12.76615 -12.66038 -12.44173 -12.26816 -12.05634 -11.94185 -11.47386 -11.28911 -10.96630 -10.90712 -10.77312 -10.24094 -9.85959 -8.87967 -7.99891 -6.05750 1.43437 1.44926 1.53242 2.50214 3.15116 3.29648 3.62231 3.78006 3.88642 3.97280 4.05817 4.35950 4.44099 4.52369 4.57038 4.67135 4.71088 4.75167 4.81317 4.88793 4.90642 4.96930 4.99546 5.07489 5.11399 5.13216 5.20289 5.27868 5.32194 5.45337 5.68144 5.69099 5.73563 5.89445 6.38833 6.53748 6.62656 6.96912 7.58640 9.08990 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.008649 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.925365 B = 3236.520242 C = 3898.222711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.536 5.536 3 C 0.069 3.931 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.133 4.133 8 C 0.118 3.882 9 C 0.028 3.972 10 C -0.467 4.467 11 H 0.045 0.955 12 C 0.021 3.979 13 N -0.916 5.916 14 Si 0.942 3.058 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.271 1.271 18 C -0.189 4.189 19 C -0.162 4.162 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.020 0.980 23 H 0.051 0.949 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.010 0.990 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 12.120 -2.264 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.259 5.259 3 C -0.059 4.059 4 C -0.127 4.127 5 C -0.172 4.172 6 C -0.168 4.168 7 C -0.170 4.170 8 C -0.010 4.010 9 C 0.027 3.973 10 C -0.505 4.505 11 H 0.063 0.937 12 C -0.177 4.177 13 N -0.556 5.556 14 Si 0.769 3.231 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.196 1.196 18 C -0.226 4.226 19 C -0.200 4.200 20 H 0.095 0.905 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.577 11.782 -2.628 13.747 hybrid contribution 0.619 -0.317 0.173 0.717 sum -5.959 11.465 -2.454 13.152 Atomic orbital electron populations 1.22424 0.87275 1.01534 1.00244 1.61706 1.08054 1.12333 1.43800 1.22106 0.98787 0.88209 0.96781 1.22557 0.97867 0.95275 0.97044 1.22928 0.97720 0.95221 1.01378 1.22759 0.95681 0.98567 0.99837 1.23058 0.95901 0.97304 1.00739 1.21366 0.97098 0.93630 0.88936 1.18925 0.95081 0.89903 0.93345 1.20467 0.95489 1.39198 0.95394 0.93668 1.25532 0.97906 0.95786 0.98453 1.70113 1.05894 1.51254 1.28321 0.85808 0.78083 0.77789 0.81438 1.20626 1.21489 1.19612 1.23005 0.90878 1.03844 1.04862 1.22404 1.00447 1.00857 0.96332 0.90497 0.92345 0.96190 0.93090 0.95027 0.90354 0.91576 0.89808 0.90245 0.89861 0.90177 0.91431 0.94235 0.97174 0.93625 0.89564 0.90819 0.92346 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 8.74 127.69 1.12 2.24 16 2 N -0.54 -21.46 4.41 -922.45 -4.07 -25.53 16 3 C 0.07 2.33 4.87 86.30 0.42 2.75 16 4 C -0.11 -3.05 3.45 -10.21 -0.04 -3.08 16 5 C -0.13 -3.02 7.64 31.12 0.24 -2.78 16 6 C -0.13 -2.50 8.09 31.12 0.25 -2.25 16 7 C -0.13 -2.98 6.00 31.18 0.19 -2.79 16 8 C 0.12 5.35 4.88 86.30 0.42 5.77 16 9 C 0.03 1.40 1.24 -52.93 -0.07 1.33 16 10 C -0.47 -26.01 8.53 25.60 0.22 -25.79 16 11 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 12 C 0.02 1.20 5.43 84.66 0.46 1.66 16 13 N -0.92 -53.69 12.66 21.45 0.27 -53.41 16 14 Si 0.94 45.15 29.54 68.60 2.03 47.17 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 C -0.19 -8.17 8.35 30.62 0.26 -7.92 16 19 C -0.16 -7.85 9.18 30.62 0.28 -7.57 16 20 H 0.08 2.31 5.49 -2.39 -0.01 2.30 16 21 H 0.06 2.15 5.94 -2.39 -0.01 2.14 16 22 H 0.02 0.61 8.13 -2.38 -0.02 0.59 16 23 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 24 H 0.03 0.98 7.82 -2.39 -0.02 0.96 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.76 8.10 -2.39 -0.02 1.75 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.73 7.90 -2.39 -0.02 1.71 16 31 H 0.07 1.49 7.29 -2.39 -0.02 1.48 16 32 H 0.04 2.00 7.80 -2.39 -0.02 1.98 16 33 H 0.01 0.43 8.00 -2.38 -0.02 0.41 16 34 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 35 H 0.09 3.26 7.99 -2.39 -0.02 3.25 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.08 299.77 2.97 -57.10 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.99 Total: 13.10 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.75 Total: -38.43 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.80 Total: -78.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -60.08 2.97 -57.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.241 kcal (2) G-P(sol) polarization free energy of solvation -60.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds