Wall clock time and date at job start Mon Mar 30 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 C 1.52999 * 109.47276 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.47124 * 64.99451 * 14 13 12 16 16 C 1.53001 * 117.49876 * 248.74878 * 15 14 13 17 17 C 1.53003 * 117.49674 * 180.08962 * 15 14 13 18 18 C 1.52999 * 109.47276 * 184.99568 * 14 13 12 19 19 C 1.52995 * 117.49902 * 128.74736 * 18 14 13 20 20 C 1.52999 * 117.49972 * 60.08265 * 18 14 13 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99967 * 208.95457 * 12 2 1 26 26 H 1.09003 * 109.46525 * 299.99167 * 13 12 2 27 27 H 1.08991 * 109.47692 * 59.99249 * 13 12 2 28 28 H 1.08998 * 109.47089 * 304.99879 * 14 13 12 29 29 H 1.08992 * 115.55276 * 34.41792 * 15 14 13 30 30 H 1.09006 * 117.49649 * 0.02562 * 16 15 14 31 31 H 1.09002 * 117.50291 * 145.02339 * 16 15 14 32 32 H 1.08998 * 117.49815 * 214.97577 * 17 15 14 33 33 H 1.08993 * 117.50119 * 359.97438 * 17 15 14 34 34 H 1.09006 * 115.54643 * 274.41303 * 18 14 13 35 35 H 1.09000 * 117.50212 * 359.97438 * 19 18 14 36 36 H 1.09000 * 117.50186 * 145.02147 * 19 18 14 37 37 H 1.08997 * 117.50044 * 214.97633 * 20 18 14 38 38 H 1.09003 * 117.49701 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5333 -3.5745 15 6 1.5822 -1.6097 -3.9702 16 6 1.9904 -3.0708 -3.7717 17 6 1.9154 -2.4816 -5.1825 18 6 2.7789 0.4455 -4.7360 19 6 4.1267 0.4374 -5.4599 20 6 3.7604 1.6021 -4.5365 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7090 1.1614 3.4844 25 1 2.9173 -1.1206 -1.0287 26 1 1.0871 0.6162 -2.5525 27 1 2.7588 1.0461 -2.1183 28 1 3.5505 -1.0022 -3.3397 29 1 0.5356 -1.3531 -3.8073 30 1 2.9804 -3.2652 -3.3589 31 1 1.2122 -3.7755 -3.4787 32 1 1.0878 -2.7988 -5.8169 33 1 2.8558 -2.2881 -5.6985 34 1 1.8879 0.6389 -5.3334 35 1 4.8826 -0.2649 -5.1085 36 1 4.1226 0.6260 -6.5335 37 1 3.5155 2.5563 -5.0030 38 1 4.2748 1.6659 -3.5776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083895103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:30 Heat of formation + Delta-G solvation = 34.658109 kcal Electronic energy + Delta-G solvation = -15530.328566 eV Core-core repulsion = 13180.718299 eV Total energy + Delta-G solvation = -2349.610267 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74948 -35.93334 -35.52769 -32.58957 -30.01386 -27.16728 -25.15683 -23.02447 -22.11286 -21.92705 -21.09385 -19.63605 -19.46401 -16.43311 -15.74564 -15.03596 -14.94424 -14.27380 -14.18969 -13.43331 -13.28592 -12.71900 -12.12726 -11.83524 -11.50158 -11.35841 -11.19915 -11.16540 -10.93310 -10.79293 -10.69502 -10.29464 -10.15829 -10.09818 -10.04553 -9.89948 -9.51626 -9.37483 -8.76919 -8.43198 -7.13937 -5.99124 -4.05291 3.32734 3.37058 3.39912 3.91565 4.15384 4.42817 4.73216 4.95524 5.02643 5.15455 5.31790 5.32238 5.37563 5.49685 5.65904 5.71569 5.84370 5.89742 5.93309 6.04512 6.12348 6.19345 6.22333 6.32509 6.41079 6.49810 6.59012 6.77949 6.95085 7.19823 7.30189 7.57514 7.82079 7.95899 8.32886 8.47159 8.75292 9.06559 9.60486 11.07187 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.006330 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.074227 B = 4422.355570 C = 4718.999222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.212 3.788 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.683 5.683 13 C 0.071 3.929 14 C -0.024 4.024 15 C -0.113 4.113 16 C -0.166 4.166 17 C -0.194 4.194 18 C -0.135 4.135 19 C -0.183 4.183 20 C -0.182 4.182 21 H 0.003 0.997 22 H 0.030 0.970 23 H 0.078 0.922 24 H 0.261 0.739 25 H 0.327 0.673 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -1.872 -13.881 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.059 4.059 14 C -0.043 4.043 15 C -0.132 4.132 16 C -0.203 4.203 17 C -0.231 4.231 18 C -0.154 4.154 19 C -0.220 4.220 20 C -0.219 4.219 21 H 0.022 0.978 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.709 -1.991 -13.889 14.290 hybrid contribution 1.026 0.140 1.108 1.516 sum 3.735 -1.851 -12.781 13.443 Atomic orbital electron populations 1.21693 0.98015 0.99203 0.99174 1.19074 0.92540 0.92208 0.85747 0.98410 1.21245 1.31345 1.12405 0.90546 0.92354 1.24923 0.95108 0.95009 0.99002 1.69898 1.36712 1.22910 1.23463 0.86599 0.79033 0.79807 0.82174 1.20395 1.21329 1.20213 1.60684 1.31808 1.33075 1.05794 1.21883 0.99640 0.93682 0.90718 1.20382 0.97537 0.93443 0.92951 1.22000 0.99654 0.91360 1.00152 1.22839 1.02526 0.96774 0.98207 1.22954 1.02575 1.06228 0.91347 1.22257 0.93477 0.99529 1.00109 1.22984 0.99060 1.02120 0.97844 1.22949 1.04333 0.93344 1.01305 0.97825 0.95056 0.90289 0.92941 0.85650 0.91932 0.96320 0.91691 0.88090 0.89295 0.89313 0.89726 0.89388 0.87992 0.89176 0.89344 0.89164 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.45 2.60 -68.86 -0.18 5.27 16 3 H 0.00 -0.05 7.80 -51.93 -0.40 -0.45 16 4 C -0.52 -14.35 8.59 -34.44 -0.30 -14.65 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.59 6.03 -107.95 -0.65 -15.24 16 13 C 0.07 1.29 4.77 -3.82 -0.02 1.27 16 14 C -0.02 -0.36 2.30 -90.62 -0.21 -0.57 16 15 C -0.11 -1.63 4.87 -90.62 -0.44 -2.07 16 16 C -0.17 -2.29 10.18 -26.69 -0.27 -2.56 16 17 C -0.19 -2.36 9.88 -26.69 -0.26 -2.62 16 18 C -0.14 -1.71 4.81 -90.62 -0.44 -2.14 16 19 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 20 C -0.18 -2.21 9.68 -26.69 -0.26 -2.47 16 21 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.33 6.90 8.22 -39.29 -0.32 6.58 16 26 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 27 H 0.02 0.35 7.04 -51.93 -0.37 -0.01 16 28 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 30 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.26 8.11 -51.93 -0.42 0.83 16 35 H 0.09 0.99 8.05 -51.93 -0.42 0.58 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.23 7.59 -51.93 -0.39 0.84 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -28.03 306.94 -9.54 -37.57 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.72 Total: 5.76 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -2.40 Total: -24.00 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.02 Total: -40.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.03 -9.54 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.224 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds