Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46854 * 120.00026 * 8 6 4 11 11 H 1.48502 * 109.46870 * 239.99430 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47236 * 64.99771 * 14 13 12 16 16 C 1.52999 * 117.49971 * 248.74797 * 15 14 13 17 17 C 1.52995 * 117.50100 * 180.09014 * 15 14 13 18 18 C 1.52997 * 109.47504 * 184.99955 * 14 13 12 19 19 C 1.52994 * 117.50217 * 128.74452 * 18 14 13 20 20 C 1.53004 * 117.49663 * 60.08390 * 18 14 13 21 21 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 23 23 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 24 24 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 25 25 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 26 26 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 27 27 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 28 28 H 1.09004 * 109.47346 * 305.00031 * 14 13 12 29 29 H 1.08995 * 115.54801 * 34.41631 * 15 14 13 30 30 H 1.08998 * 117.49749 * 0.02562 * 16 15 14 31 31 H 1.09002 * 117.50140 * 145.01929 * 16 15 14 32 32 H 1.08996 * 117.49939 * 214.98333 * 17 15 14 33 33 H 1.09005 * 117.49876 * 359.97090 * 17 15 14 34 34 H 1.08998 * 115.54845 * 274.42046 * 18 14 13 35 35 H 1.09004 * 117.50101 * 0.02562 * 19 18 14 36 36 H 1.08999 * 117.50231 * 145.01936 * 19 18 14 37 37 H 1.08997 * 117.49709 * 214.98068 * 20 18 14 38 38 H 1.08992 * 117.49891 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 4.0386 -0.9790 3.3329 16 6 4.2975 -2.4784 3.1733 17 6 4.7340 -1.7578 4.4512 18 6 2.5428 0.3850 4.7972 19 6 1.8470 -0.1476 6.0514 20 6 1.1766 0.9389 5.2069 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7081 1.1608 -3.4844 25 1 1.4494 -1.4979 1.4101 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6163 2.5526 28 1 1.9691 -1.4081 3.7501 29 1 4.6482 -0.2971 2.7401 30 1 3.4394 -3.1472 3.2399 31 1 5.0778 -2.7830 2.4758 32 1 5.8012 -1.5886 4.5940 33 1 4.1632 -1.9522 5.3593 34 1 3.4101 1.0299 4.9383 35 1 1.4268 -1.1523 6.0056 36 1 2.2564 0.1471 7.0177 37 1 1.1452 1.9479 5.6178 38 1 0.3152 0.6495 4.6050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083895104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = 20.677850 kcal Electronic energy + Delta-G solvation = -15534.488816 eV Core-core repulsion = 13184.272320 eV Total energy + Delta-G solvation = -2350.216496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90376 -37.43477 -36.92059 -34.51379 -31.72750 -28.64100 -27.22763 -24.37961 -23.11189 -22.99673 -22.17831 -22.00837 -20.57849 -18.33699 -16.86873 -16.73824 -16.21967 -15.74564 -15.60709 -14.93773 -14.66437 -14.37718 -13.69372 -13.54345 -13.01369 -12.83726 -12.73761 -12.49963 -12.37764 -12.31580 -12.20572 -12.16444 -11.92255 -11.80893 -11.15935 -11.08680 -11.02802 -10.59342 -10.50129 -10.47985 -8.86047 -8.08467 -6.19336 1.41855 1.43446 1.56107 2.44800 2.94717 3.09156 3.19728 3.62640 3.73118 4.01886 4.11890 4.22499 4.27930 4.34570 4.50297 4.58181 4.66024 4.73724 4.81620 4.85114 4.91069 4.93052 4.97610 5.08761 5.12719 5.19321 5.23992 5.31656 5.39067 5.40599 5.47195 5.59578 5.70572 5.84230 6.29871 6.69409 6.88364 6.98322 7.50912 8.97370 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033597 B = 0.006613 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.212461 B = 4232.806689 C = 4880.597861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.003 1.003 4 C -0.510 4.510 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.677 5.677 13 C 0.075 3.925 14 C -0.010 4.010 15 C -0.133 4.133 16 C -0.177 4.177 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.163 4.163 20 C -0.189 4.189 21 H 0.032 0.968 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.260 0.740 25 H 0.328 0.672 26 H 0.046 0.954 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -3.016 15.663 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.548 4.548 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.307 5.307 13 C -0.055 4.055 14 C -0.029 4.029 15 C -0.151 4.151 16 C -0.215 4.215 17 C -0.201 4.201 18 C -0.165 4.165 19 C -0.199 4.199 20 C -0.226 4.226 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.674 -2.822 15.363 16.047 hybrid contribution -0.858 0.076 -1.088 1.388 sum 2.816 -2.746 14.275 14.807 Atomic orbital electron populations 1.22233 1.00214 0.99142 0.99887 1.18919 0.89855 0.92562 0.87988 0.98494 1.21490 1.30044 1.12268 0.91035 0.92743 1.25740 0.95560 0.95919 1.01952 1.70026 1.38275 1.24440 1.23840 0.85464 0.78052 0.78588 0.79237 1.19298 1.20565 1.20832 1.60626 1.57450 1.09266 1.03324 1.21885 0.97757 0.95233 0.90625 1.20195 0.94382 0.96478 0.91848 1.21926 0.96092 0.94632 1.02455 1.22878 1.03157 0.94913 1.00505 1.22986 1.00762 1.03616 0.92753 1.22177 0.96500 1.02436 0.95407 1.23054 1.03196 0.98555 0.95133 1.22984 0.96007 0.99357 1.04264 0.94930 0.95870 0.92085 0.93085 0.85558 0.93566 0.96555 0.91636 0.89970 0.89232 0.89800 0.88449 0.87973 0.87621 0.88814 0.87343 0.88047 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 8.94 71.98 0.64 -7.02 16 2 C 0.22 11.19 2.57 44.16 0.11 11.30 16 3 H 0.00 -0.17 7.80 -2.39 -0.02 -0.19 16 4 C -0.51 -28.91 8.84 25.60 0.23 -28.69 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.33 5.30 84.66 0.45 0.78 16 7 N -0.93 -54.43 11.32 21.45 0.24 -54.19 16 8 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.68 -28.96 5.96 -495.47 -2.95 -31.92 16 13 C 0.07 2.70 4.77 86.30 0.41 3.11 16 14 C -0.01 -0.29 2.30 -10.79 -0.02 -0.31 16 15 C -0.13 -3.75 4.87 -10.79 -0.05 -3.80 16 16 C -0.18 -4.74 10.18 30.62 0.31 -4.43 16 17 C -0.16 -3.64 9.88 30.61 0.30 -3.34 16 18 C -0.15 -3.41 4.81 -10.80 -0.05 -3.46 16 19 C -0.16 -3.05 10.18 30.62 0.31 -2.74 16 20 C -0.19 -4.15 9.68 30.62 0.30 -3.85 16 21 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 22 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 23 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.33 13.30 8.47 -89.69 -0.76 12.54 16 26 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 27 H 0.02 0.60 6.42 -2.39 -0.02 0.58 16 28 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 29 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 30 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.11 2.41 8.11 -2.39 -0.02 2.39 16 35 H 0.09 1.72 8.05 -2.38 -0.02 1.70 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.99 7.59 -2.39 -0.02 1.97 16 Total: -1.00 -59.98 307.26 2.51 -57.48 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.25 Total: 24.27 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.94 Total: -42.44 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.71 Total: -86.11 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -59.98 2.51 -57.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.153 kcal (2) G-P(sol) polarization free energy of solvation -59.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds