Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47041 * 89.99908 * 3 2 1 5 5 H 1.48502 * 109.47260 * 210.00193 * 3 2 1 6 6 H 1.48500 * 109.46966 * 330.00147 * 3 2 1 7 7 C 1.37875 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00399 * 186.48847 * 7 2 1 9 9 C 1.50704 * 119.99958 * 6.48346 * 7 2 1 10 10 C 1.53000 * 115.55019 * 275.17487 * 9 7 2 11 11 S 1.81402 * 109.46851 * 300.27509 * 10 9 7 12 12 O 1.42104 * 110.54641 * 296.41292 * 11 10 9 13 13 O 1.42102 * 110.54262 * 73.16393 * 11 10 9 14 14 Cl 2.02001 * 104.45073 * 184.78575 * 11 10 9 15 15 C 1.52998 * 117.49782 * 129.50155 * 9 7 2 16 16 C 1.53001 * 117.49764 * 60.83959 * 9 7 2 17 17 H 0.96998 * 120.00144 * 175.28359 * 1 2 3 18 18 H 1.08997 * 109.47688 * 60.27536 * 10 9 7 19 19 H 1.08994 * 109.46923 * 180.27842 * 10 9 7 20 20 H 1.09000 * 117.49948 * 359.97438 * 15 9 7 21 21 H 1.09001 * 117.49925 * 145.02554 * 15 9 7 22 22 H 1.08992 * 117.50190 * 214.98008 * 16 9 7 23 23 H 1.09004 * 117.50020 * 359.97438 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4402 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0793 -1.1971 0.1052 9 6 1.2582 -2.4949 -0.1485 10 6 0.6895 -3.0803 1.1457 11 16 2.0417 -3.3899 2.3146 12 8 2.9320 -4.3702 1.7991 13 8 2.5288 -2.1665 2.8489 14 17 1.1530 -4.2999 3.8838 15 6 1.7560 -3.4782 -1.2097 16 6 0.4534 -2.7056 -1.4326 17 1 -0.4850 -0.8372 -0.0691 18 1 -0.0158 -2.3747 1.5846 19 1 0.1773 -4.0171 0.9263 20 1 2.6230 -3.1840 -1.8012 21 1 1.6780 -4.5421 -0.9862 22 1 -0.4809 -3.2615 -1.3555 23 1 0.4634 -1.9031 -2.1702 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114589939.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = -64.956293 kcal Electronic energy + Delta-G solvation = -12064.001752 eV Core-core repulsion = 9645.173956 eV Total energy + Delta-G solvation = -2418.827796 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 224.006 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.43780 -37.00481 -35.88868 -35.66509 -32.27779 -28.83360 -25.29882 -21.67515 -20.45731 -19.32278 -17.54369 -17.23621 -15.88289 -15.80264 -14.33419 -13.89369 -13.57474 -12.94536 -12.27586 -12.01055 -11.91214 -11.77196 -11.49060 -11.46098 -11.33904 -10.98012 -10.92362 -10.65665 -10.23513 -9.97757 -8.95409 -8.79121 -8.64291 -6.72820 -4.51194 -0.62750 2.26585 3.35246 3.37005 3.52142 3.53660 4.16193 4.29703 4.65586 4.88029 5.10974 5.36572 5.70903 5.87606 5.97925 6.30382 6.44169 6.69689 6.92693 7.69841 8.05985 8.48251 9.23527 10.66303 Molecular weight = 224.01amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.012298 C = 0.010602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.397998 B = 2276.249429 C = 2640.390980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 1.068 2.932 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.005 3.995 10 C -0.502 4.502 11 S 2.358 3.642 12 O -0.885 6.885 13 O -0.852 6.852 14 Cl -0.538 7.538 15 C -0.188 4.188 16 C -0.146 4.146 17 H 0.277 0.723 18 H 0.142 0.858 19 H 0.118 0.882 20 H 0.094 0.906 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -5.194 0.655 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.168 4.168 3 Si 0.894 3.106 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.623 4.623 8 H 0.086 0.914 9 C 0.002 3.998 10 C -0.638 4.638 11 S 2.461 3.539 12 O -0.883 6.883 13 O -0.851 6.851 14 Cl -0.537 7.537 15 C -0.225 4.225 16 C -0.187 4.187 17 H 0.088 0.912 18 H 0.160 0.840 19 H 0.137 0.863 20 H 0.113 0.887 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.272 -3.749 1.343 3.991 hybrid contribution -0.329 -1.682 -0.327 1.745 sum -0.057 -5.431 1.016 5.525 Atomic orbital electron populations 1.70772 1.06928 1.31833 1.41958 1.25966 0.96273 1.02851 0.91746 0.83553 0.74918 0.74469 0.77665 1.20515 1.20889 1.20648 1.21537 0.95066 0.89380 1.56317 0.91400 1.18765 1.01001 0.96326 0.83709 1.30387 1.14655 1.08920 1.09845 1.14169 0.82525 0.77388 0.79791 1.93639 1.59091 1.59830 1.75776 1.93682 1.76325 1.40113 1.74934 1.99000 1.91204 1.90150 1.73388 1.23158 0.98556 0.95951 1.04853 1.22848 0.93608 1.02125 1.00090 0.91185 0.84041 0.86322 0.88721 0.90112 0.90505 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.42 13.57 55.43 0.75 -22.66 14 2 C 0.04 1.04 5.39 -17.82 -0.10 0.95 14 3 Si 1.07 23.59 29.91 -169.99 -5.08 18.50 14 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 7 C -0.58 -14.74 7.79 -34.44 -0.27 -15.01 14 8 H 0.07 1.76 7.82 -52.49 -0.41 1.35 14 9 C 0.01 0.11 0.97 -155.66 -0.15 -0.04 14 10 C -0.50 -9.37 5.91 37.16 0.22 -9.15 14 11 S 2.36 46.14 5.43 -107.50 -0.58 45.56 14 12 O -0.89 -18.35 18.05 -57.54 -1.04 -19.38 14 13 O -0.85 -19.43 17.45 -57.54 -1.00 -20.43 14 14 Cl -0.54 -9.53 29.46 -51.86 -1.53 -11.06 14 15 C -0.19 -3.60 9.95 -26.69 -0.27 -3.87 14 16 C -0.15 -2.86 8.70 -26.69 -0.23 -3.09 14 17 H 0.28 7.05 6.18 -40.82 -0.25 6.80 14 18 H 0.14 2.64 7.83 -51.93 -0.41 2.24 14 19 H 0.12 1.74 8.11 -51.93 -0.42 1.32 14 20 H 0.09 1.81 8.14 -51.93 -0.42 1.38 14 21 H 0.08 1.37 8.14 -51.93 -0.42 0.95 14 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 14 23 H 0.10 1.99 8.14 -51.93 -0.42 1.56 14 LS Contribution 236.40 15.07 3.56 3.56 Total: -1.00 -28.95 236.40 -7.69 -36.64 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -1.98 Total: -0.51 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -0.79 Total: -30.21 kcal Atomic # 7 Polarization: -23.42 SS G_CDS: 0.75 Total: -22.66 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.04 Total: -39.82 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.08 Total: 18.50 kcal Atomic # 16 Polarization: 46.14 SS G_CDS: -0.58 Total: 45.56 kcal Atomic # 17 Polarization: -9.53 SS G_CDS: -1.53 Total: -11.06 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.95 -7.69 -36.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114589939.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.312 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds