Wall clock time and date at job start Mon Mar 30 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46873 * 2 1 4 4 C 1.53001 * 109.46881 * 120.00104 * 2 1 3 5 5 N 1.46904 * 109.46993 * 294.86804 * 4 2 1 6 6 C 1.46897 * 110.99715 * 184.63060 * 5 4 2 7 7 C 1.52998 * 109.47392 * 185.51860 * 6 5 4 8 8 C 1.50706 * 115.54892 * 305.29621 * 7 6 5 9 9 H 1.07994 * 120.00029 * 279.31084 * 8 7 6 10 10 C 1.37875 * 119.99753 * 99.03309 * 8 7 6 11 11 N 1.31518 * 119.99898 * 175.31691 * 10 8 7 12 12 Si 1.86807 * 120.00249 * 355.31027 * 10 8 7 13 13 H 1.48503 * 109.46757 * 94.85784 * 12 10 8 14 14 H 1.48493 * 109.47248 * 214.85861 * 12 10 8 15 15 H 1.48500 * 109.47127 * 334.86161 * 12 10 8 16 16 C 1.53001 * 117.51952 * 90.99544 * 7 6 5 17 17 C 1.52994 * 117.50299 * 159.62707 * 7 6 5 18 18 C 1.52995 * 109.47244 * 240.00218 * 2 1 3 19 19 C 1.53003 * 117.49858 * 128.62140 * 18 2 1 20 20 C 1.53003 * 117.49739 * 59.99912 * 18 2 1 21 21 H 1.08997 * 109.46932 * 184.78005 * 1 2 3 22 22 H 1.09005 * 109.46778 * 304.77857 * 1 2 3 23 23 H 1.08996 * 109.46630 * 64.77472 * 1 2 3 24 24 H 1.09003 * 109.46517 * 174.87541 * 4 2 1 25 25 H 1.08988 * 109.47198 * 54.87086 * 4 2 1 26 26 H 1.00893 * 111.00211 * 308.58817 * 5 4 2 27 27 H 1.09007 * 109.47163 * 65.51595 * 6 5 4 28 28 H 1.09003 * 109.47677 * 305.52215 * 6 5 4 29 29 H 0.97002 * 120.00088 * 179.97438 * 11 10 8 30 30 H 1.09002 * 117.49922 * 214.97587 * 16 7 6 31 31 H 1.09000 * 117.49318 * 359.97438 * 16 7 6 32 32 H 1.09000 * 117.49802 * 359.97438 * 17 7 6 33 33 H 1.08996 * 117.50627 * 144.97645 * 17 7 6 34 34 H 1.09000 * 115.55171 * 274.33127 * 18 2 1 35 35 H 1.08992 * 117.50253 * 359.97438 * 19 18 2 36 36 H 1.09000 * 117.49520 * 145.02438 * 19 18 2 37 37 H 1.09000 * 117.49887 * 214.98036 * 20 18 2 38 38 H 1.08993 * 117.50072 * 359.97431 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6541 0.0391 2.4455 6 6 2.2207 -0.5651 3.6587 7 6 1.6875 0.1689 4.8907 8 6 1.8990 1.6610 4.9005 9 1 2.8558 2.0689 5.1912 10 6 0.8727 2.5051 4.5328 11 7 1.0262 3.8077 4.6291 12 14 -0.7358 1.7985 3.8978 13 1 -1.7027 1.6833 5.0190 14 1 -1.2928 2.6959 2.8540 15 1 -0.4905 0.4546 3.3156 16 6 0.4071 -0.3674 5.5340 17 6 1.7541 -0.5628 6.2328 18 6 2.0401 -0.7212 -1.2492 19 6 3.0742 0.0053 -2.1116 20 6 1.6358 -0.1494 -2.6096 21 1 -0.3633 -1.0241 0.0856 22 1 -0.3633 0.5862 0.8441 23 1 -0.3632 0.4380 -0.9297 24 1 3.1262 -0.8014 1.2045 25 1 1.6036 -1.7189 1.2964 26 1 1.9266 1.0069 2.3623 27 1 3.3075 -0.4858 3.6305 28 1 1.9343 -1.6156 3.7094 29 1 0.3043 4.4016 4.3701 30 1 -0.2824 0.3590 5.9642 31 1 -0.0560 -1.2431 5.0791 32 1 2.1773 -1.5672 6.2379 33 1 1.9511 0.0349 7.1227 34 1 2.1268 -1.8044 -1.1643 35 1 3.3909 0.9971 -1.7893 36 1 3.8416 -0.6000 -2.5941 37 1 1.4569 -0.8564 -3.4197 38 1 1.0061 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132870991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:26 Heat of formation + Delta-G solvation = 41.298713 kcal Electronic energy + Delta-G solvation = -15780.320070 eV Core-core repulsion = 13430.997761 eV Total energy + Delta-G solvation = -2349.322309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.31511 -37.17465 -34.68239 -31.97297 -31.25591 -26.63481 -25.35451 -24.08987 -22.25439 -21.81651 -21.37588 -19.74709 -18.71026 -16.25160 -15.60215 -14.96416 -14.93924 -14.60753 -14.07826 -13.46786 -13.28681 -12.69480 -12.45895 -12.26208 -11.91912 -11.74964 -11.47640 -11.18020 -10.96181 -10.83835 -10.49806 -10.44398 -10.20160 -10.14952 -9.81856 -9.71829 -9.38963 -8.91003 -8.53518 -8.35569 -7.36608 -6.00704 -4.06426 3.48188 3.59500 3.83069 3.89187 4.54534 4.65684 4.89990 4.95892 4.99480 5.20309 5.31076 5.39796 5.54196 5.61541 5.69348 5.74058 5.87667 5.91800 6.07883 6.10611 6.13292 6.16294 6.21276 6.29434 6.36535 6.45088 6.58277 6.59621 6.62330 6.71611 6.82621 7.13023 7.21389 7.84907 7.94497 8.26042 8.57411 8.99213 9.63746 11.09231 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.008309 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.353819 B = 3369.073498 C = 3710.267655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 H 0.069 0.931 4 C 0.066 3.934 5 N -0.675 5.675 6 C 0.104 3.896 7 C 0.010 3.990 8 C -0.494 4.494 9 H 0.072 0.928 10 C 0.080 3.920 11 N -0.903 5.903 12 Si 0.870 3.130 13 H -0.298 1.298 14 H -0.306 1.306 15 H -0.204 1.204 16 C -0.195 4.195 17 C -0.189 4.189 18 C -0.142 4.142 19 C -0.183 4.183 20 C -0.181 4.181 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.353 0.647 27 H 0.020 0.980 28 H 0.045 0.955 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -9.432 -10.729 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.026 4.026 7 C 0.009 3.991 8 C -0.532 4.532 9 H 0.090 0.910 10 C -0.122 4.122 11 N -0.540 5.540 12 Si 0.699 3.301 13 H -0.226 1.226 14 H -0.234 1.234 15 H -0.126 1.126 16 C -0.232 4.232 17 C -0.227 4.227 18 C -0.160 4.160 19 C -0.220 4.220 20 C -0.218 4.218 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.174 0.826 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.044 -9.580 -10.704 14.365 hybrid contribution 0.027 0.120 -0.310 0.333 sum 0.072 -9.460 -11.014 14.519 Atomic orbital electron populations 1.21718 0.94442 1.01795 1.01352 1.20743 0.96487 0.98779 0.91944 0.91255 1.21936 0.96731 0.97600 0.90072 1.60550 1.62851 1.06994 1.00413 1.21433 0.95198 0.95736 0.90212 1.19376 0.96018 0.95211 0.88526 1.20234 1.00168 0.86327 1.46432 0.91045 1.25031 0.98893 0.94355 0.93957 1.69942 1.33611 1.02821 1.47604 0.87066 0.82155 0.82889 0.78033 1.22614 1.23388 1.12595 1.22840 0.91664 1.02137 1.06575 1.22895 1.01269 0.99808 0.98727 1.22326 1.03082 0.99024 0.91601 1.23015 0.92348 1.02195 1.04477 1.22908 0.98110 1.03360 0.97417 0.93146 0.91345 0.93725 0.96132 0.91968 0.82631 0.96160 0.93633 0.92821 0.89968 0.90851 0.91331 0.89755 0.88107 0.88804 0.89248 0.89249 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.69 16 2 C -0.06 -0.88 2.64 -90.62 -0.24 -1.12 16 3 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 4 C 0.07 1.05 5.07 -3.82 -0.02 1.03 16 5 N -0.68 -13.19 3.58 -113.78 -0.41 -13.60 16 6 C 0.10 2.09 5.62 -3.83 -0.02 2.07 16 7 C 0.01 0.23 1.39 -155.66 -0.22 0.01 16 8 C -0.49 -13.63 8.64 -34.44 -0.30 -13.93 16 9 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 10 C 0.08 2.28 5.32 -17.82 -0.09 2.19 16 11 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 12 Si 0.87 21.79 23.31 -169.99 -3.96 17.82 16 13 H -0.30 -7.67 6.97 56.52 0.39 -7.27 16 14 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 15 H -0.20 -4.76 5.27 56.52 0.30 -4.46 16 16 C -0.20 -4.29 7.10 -26.73 -0.19 -4.48 16 17 C -0.19 -3.95 9.95 -26.73 -0.27 -4.21 16 18 C -0.14 -1.71 5.15 -90.62 -0.47 -2.18 16 19 C -0.18 -2.03 10.18 -26.73 -0.27 -2.31 16 20 C -0.18 -1.96 9.67 -26.73 -0.26 -2.22 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 23 H 0.04 0.59 7.13 -51.93 -0.37 0.22 16 24 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 25 H 0.06 0.95 8.14 -51.94 -0.42 0.53 16 26 H 0.35 7.59 7.49 -39.30 -0.29 7.30 16 27 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.08 1.95 6.04 -51.93 -0.31 1.64 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 35 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -29.07 297.75 -8.04 -37.11 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.92 Total: 7.75 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -2.01 Total: -26.84 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.37 Total: -40.34 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -3.96 Total: 17.82 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.07 -8.04 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132870991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.410 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds