Wall clock time and date at job start Mon Mar 30 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30512 * 1 3 3 Si 1.86801 * 120.00439 * 2 1 4 4 H 1.48497 * 109.47171 * 95.00611 * 3 2 1 5 5 H 1.48495 * 109.47190 * 215.01227 * 3 2 1 6 6 H 1.48504 * 109.46833 * 335.01090 * 3 2 1 7 7 C 1.40468 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 173.95149 * 7 2 1 9 9 C 1.40158 * 120.00052 * 353.95680 * 7 2 1 10 10 N 1.32419 * 125.12939 * 185.50716 * 9 7 2 11 11 C 1.33843 * 108.85371 * 179.86325 * 10 9 7 12 12 C 1.40523 * 134.76187 * 180.09671 * 11 10 9 13 13 C 1.36530 * 118.77685 * 180.31839 * 12 11 10 14 14 N 1.32285 * 121.47677 * 359.97438 * 13 12 11 15 15 C 1.31952 * 122.47307 * 359.97438 * 14 13 12 16 16 Cl 1.73605 * 119.85223 * 179.97438 * 15 14 13 17 17 C 1.38632 * 120.29309 * 0.04214 * 15 14 13 18 18 O 1.34925 * 134.74801 * 179.97438 * 17 15 14 19 19 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.61494 * 0.33979 * 12 11 10 21 21 H 1.07989 * 119.26262 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.5926 1.9852 1.3947 5 1 3.4798 1.4729 -0.8033 6 1 1.3878 2.6809 -0.5915 7 6 2.0074 -1.2165 0.0005 8 1 3.0829 -1.2192 -0.0980 9 6 1.3124 -2.4269 0.1289 10 7 1.8750 -3.6199 0.2455 11 6 0.9123 -4.5438 0.3499 12 6 0.8935 -5.9414 0.4950 13 6 -0.3118 -6.5788 0.5652 14 7 -1.4515 -5.9103 0.5001 15 6 -1.4967 -4.5985 0.3651 16 17 -3.0311 -3.7903 0.2863 17 6 -0.3243 -3.8630 0.2846 18 8 -0.0325 -2.5528 0.1480 19 1 -0.4850 0.8401 -0.0004 20 1 1.8156 -6.5010 0.5504 21 1 -0.3353 -7.6527 0.6764 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214754159.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:44 Heat of formation + Delta-G solvation = 17.708253 kcal Electronic energy + Delta-G solvation = -12626.550395 eV Core-core repulsion = 10108.156003 eV Total energy + Delta-G solvation = -2518.394392 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.009 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.67142 -38.10735 -35.90446 -34.25867 -33.32460 -30.21581 -29.76015 -27.11883 -22.69879 -22.41385 -20.74186 -18.42698 -17.24426 -16.24152 -15.56624 -15.35249 -15.02118 -14.00382 -13.73804 -13.00102 -12.90637 -11.89016 -11.68437 -11.46818 -11.23281 -11.07568 -10.71383 -10.61954 -10.33823 -9.87316 -9.34081 -8.87133 -8.15884 -7.86812 -7.42779 -5.32988 1.55295 2.09999 2.52448 2.72831 2.77998 2.84981 3.49418 3.53520 3.99350 4.43697 4.85331 5.18328 5.41972 5.60987 5.95127 6.29329 6.46284 6.49371 6.88906 7.08064 7.39626 7.63585 7.93438 8.05818 8.52350 9.22505 9.55395 Molecular weight = 224.01amu Principal moments of inertia in cm(-1) A = 0.039041 B = 0.009588 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.022134 B = 2919.678324 C = 3624.371735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.062 3.938 3 Si 0.943 3.057 4 H -0.259 1.259 5 H -0.253 1.253 6 H -0.269 1.269 7 C -0.388 4.388 8 H 0.125 0.875 9 C 0.373 3.627 10 N -0.616 5.616 11 C 0.146 3.854 12 C -0.192 4.192 13 C 0.105 3.895 14 N -0.517 5.517 15 C 0.220 3.780 16 Cl -0.050 7.050 17 C -0.096 4.096 18 O -0.182 6.182 19 H 0.299 0.701 20 H 0.131 0.869 21 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -0.664 0.263 0.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.194 1.194 7 C -0.421 4.421 8 H 0.143 0.857 9 C 0.196 3.804 10 N -0.352 5.352 11 C 0.014 3.986 12 C -0.216 4.216 13 C -0.047 4.047 14 N -0.234 5.234 15 C 0.054 3.946 16 Cl -0.022 7.022 17 C -0.154 4.154 18 O -0.077 6.077 19 H 0.110 0.890 20 H 0.149 0.851 21 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.891 -0.924 0.287 1.315 hybrid contribution 0.090 1.277 -0.044 1.281 sum -0.800 0.353 0.243 0.908 Atomic orbital electron populations 1.69647 1.07997 1.31704 1.26577 1.26424 0.95303 1.02948 0.91958 0.85723 0.80034 0.77541 0.80287 1.18354 1.17608 1.19392 1.18991 0.96006 0.85532 1.41542 0.85688 1.22481 0.76242 0.93718 0.88006 1.70995 1.29211 0.97431 1.37544 1.20171 0.88804 0.94979 0.94626 1.20747 0.99355 0.91009 1.10491 1.21658 0.86233 0.99078 0.97752 1.66961 1.30498 1.05220 1.20711 1.20007 0.83518 0.88651 1.02403 1.98347 1.30180 1.77179 1.96521 1.21065 0.96009 0.85737 1.12622 1.85081 1.26070 1.20740 1.75853 0.88962 0.85126 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.50 11.96 55.57 0.66 -16.84 14 2 C 0.06 1.39 5.50 -17.27 -0.09 1.29 14 3 Si 0.94 16.12 29.57 -169.99 -5.03 11.10 14 4 H -0.26 -4.38 7.11 56.52 0.40 -3.97 14 5 H -0.25 -4.21 7.11 56.52 0.40 -3.80 14 6 H -0.27 -4.46 7.11 56.52 0.40 -4.06 14 7 C -0.39 -9.52 9.46 -38.02 -0.36 -9.88 14 8 H 0.13 2.83 7.86 -52.49 -0.41 2.42 14 9 C 0.37 10.08 7.61 -16.58 -0.13 9.96 14 10 N -0.62 -16.47 11.34 -11.01 -0.12 -16.59 14 11 C 0.15 3.66 7.29 -84.96 -0.62 3.04 14 12 C -0.19 -3.93 10.14 -39.34 -0.40 -4.33 14 13 C 0.10 1.97 11.09 -17.97 -0.20 1.77 14 14 N -0.52 -11.06 10.31 -10.62 -0.11 -11.17 14 15 C 0.22 5.10 7.30 -17.35 -0.13 4.97 14 16 Cl -0.05 -1.05 29.12 -51.86 -1.51 -2.56 14 17 C -0.10 -2.47 7.27 -38.27 -0.28 -2.75 14 18 O -0.18 -5.01 9.03 1.75 0.02 -4.99 14 19 H 0.30 6.24 8.29 -40.82 -0.34 5.91 14 20 H 0.13 2.31 8.06 -52.49 -0.42 1.88 14 21 H 0.16 2.19 8.06 -52.49 -0.42 1.77 14 LS Contribution 220.58 15.07 3.32 3.32 Total: -1.00 -28.16 220.58 -5.36 -33.52 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -0.39 Total: 0.14 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.20 Total: 4.07 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.43 Total: -44.59 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.02 Total: -4.99 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.10 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.51 Total: -2.56 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.16 -5.36 -33.52 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214754159.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.225 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds