Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47086 * 2 1 4 4 C 1.50699 * 109.47189 * 240.00188 * 2 1 3 5 5 H 1.08004 * 120.00443 * 245.25134 * 4 2 1 6 6 C 1.37874 * 120.00222 * 65.24147 * 4 2 1 7 7 N 1.31515 * 120.00530 * 196.43603 * 6 4 2 8 8 Si 1.86801 * 119.99658 * 16.43887 * 6 4 2 9 9 H 1.48505 * 109.47248 * 93.04305 * 8 6 4 10 10 H 1.48506 * 109.47197 * 213.03966 * 8 6 4 11 11 H 1.48496 * 109.47248 * 333.03845 * 8 6 4 12 12 N 1.46896 * 109.46895 * 120.00313 * 2 1 3 13 13 C 1.46716 * 111.00411 * 66.51832 * 12 2 1 14 14 C 1.52683 * 108.70001 * 190.78295 * 13 12 2 15 15 C 1.51697 * 110.76990 * 301.31542 * 14 13 12 16 16 C 1.50079 * 114.70499 * 44.60322 * 15 14 13 17 17 H 1.09012 * 107.40897 * 202.46693 * 16 15 14 18 18 C 1.53700 * 112.46526 * 83.92043 * 16 15 14 19 19 C 1.54043 * 104.92411 * 200.93597 * 18 16 15 20 20 C 1.53782 * 107.04115 * 18.56559 * 19 18 16 21 21 C 1.46773 * 110.99805 * 190.83852 * 12 2 1 22 22 H 1.08999 * 111.22828 * 302.52711 * 21 12 2 23 23 H 1.08998 * 109.47133 * 297.90235 * 1 2 3 24 24 H 1.08999 * 109.47389 * 57.90557 * 1 2 3 25 25 H 1.09007 * 109.47558 * 177.90484 * 1 2 3 26 26 H 0.97004 * 120.00217 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.59548 * 310.54348 * 13 12 2 28 28 H 1.08995 * 109.59833 * 70.85358 * 13 12 2 29 29 H 1.09001 * 109.23660 * 61.55219 * 14 13 12 30 30 H 1.09003 * 109.23140 * 180.96679 * 14 13 12 31 31 H 1.09005 * 108.32366 * 283.33677 * 15 14 13 32 32 H 1.08995 * 108.54975 * 166.04034 * 15 14 13 33 33 H 1.09006 * 110.35174 * 82.07880 * 18 16 15 34 34 H 1.09001 * 110.35201 * 319.79456 * 18 16 15 35 35 H 1.09005 * 109.91626 * 259.21774 * 19 18 16 36 36 H 1.08993 * 110.08753 * 138.00772 * 19 18 16 37 37 H 1.08996 * 110.01945 * 121.25124 * 20 19 18 38 38 H 1.08998 * 110.01979 * 242.61124 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5815 -1.6353 -1.1337 6 6 1.7907 -0.1797 -2.4798 7 7 1.9305 -0.9295 -3.5512 8 14 1.2647 1.6046 -2.6508 9 1 2.4627 2.4555 -2.8653 10 1 0.3467 1.7411 -3.8102 11 1 0.5664 2.0356 -1.4132 12 7 2.0196 -0.6926 1.1994 13 6 1.6803 -2.1193 1.1581 14 6 1.9665 -2.7304 2.5277 15 6 3.4245 -2.5473 2.9045 16 6 3.9740 -1.1765 2.6374 17 1 5.0570 -1.2694 2.5560 18 6 3.6691 -0.1895 3.7755 19 6 3.8002 1.2059 3.1363 20 6 3.7022 1.0150 1.6135 21 6 3.4637 -0.4931 1.3692 22 1 4.0152 -0.8368 0.4941 23 1 -0.3633 0.4809 0.9082 24 1 -0.3634 0.5460 -0.8706 25 1 -0.3634 -1.0270 -0.0376 26 1 1.7609 -0.5560 -4.4302 27 1 0.6233 -2.2370 0.9189 28 1 2.2844 -2.6170 0.3996 29 1 1.3404 -2.2441 3.2759 30 1 1.7334 -3.7949 2.5017 31 1 4.0166 -3.2712 2.3445 32 1 3.5378 -2.7631 3.9668 33 1 4.3927 -0.3062 4.5824 34 1 2.6563 -0.3420 4.1484 35 1 4.7646 1.6434 3.3944 36 1 2.9944 1.8532 3.4821 37 1 2.8675 1.5937 1.2179 38 1 4.6316 1.3277 1.1376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227167280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -8.063128 kcal Electronic energy + Delta-G solvation = -16730.970341 eV Core-core repulsion = 14379.507543 eV Total energy + Delta-G solvation = -2351.462799 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48897 -35.42727 -33.78726 -32.05515 -29.50355 -28.40897 -26.83794 -24.99331 -23.60071 -21.51225 -20.31349 -19.08727 -17.92697 -16.42026 -15.82407 -14.83453 -14.55783 -14.20245 -13.96285 -13.40290 -13.19075 -12.57830 -12.47801 -11.99449 -11.89592 -11.44871 -11.16993 -11.03491 -10.83499 -10.67966 -10.50705 -10.36385 -10.19876 -9.97205 -9.82387 -9.72783 -9.55200 -9.34605 -9.15159 -8.42010 -7.03268 -6.11403 -4.05452 3.27769 3.37673 3.40669 4.42299 4.86226 5.05990 5.08885 5.22305 5.28755 5.49239 5.62141 5.71525 5.94591 6.01945 6.10379 6.12789 6.23279 6.29774 6.35095 6.39873 6.43478 6.47995 6.53686 6.63670 6.70269 6.70400 6.80284 6.83104 6.89858 6.90831 7.02921 7.23606 7.33600 7.66631 8.24144 8.32019 8.50843 8.96342 9.56948 11.01672 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032294 B = 0.010593 C = 0.009348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.827338 B = 2642.659926 C = 2994.526548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.173 3.827 3 H 0.038 0.962 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.861 3.139 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.252 1.252 12 N -0.519 5.519 13 C 0.063 3.937 14 C -0.113 4.113 15 C -0.101 4.101 16 C -0.080 4.080 17 H 0.055 0.945 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.120 4.120 21 C 0.096 3.904 22 H 0.054 0.946 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 0.986 12.312 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.688 3.312 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.176 1.176 12 N -0.243 5.243 13 C -0.065 4.065 14 C -0.151 4.151 15 C -0.139 4.139 16 C -0.099 4.099 17 H 0.074 0.926 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.013 4.013 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.735 1.187 12.526 12.701 hybrid contribution 0.218 0.553 -1.156 1.300 sum 1.954 1.740 11.369 11.666 Atomic orbital electron populations 1.22092 0.98277 1.00322 0.98612 1.19681 0.91727 0.94808 0.87204 0.94408 1.21584 1.36770 1.10124 0.89979 0.90803 1.24926 0.94356 0.97285 0.95850 1.70014 1.49091 1.35388 0.98440 0.87205 0.78808 0.86825 0.78315 1.20752 1.21482 1.17640 1.62366 1.11914 1.10487 1.39522 1.21787 1.00900 0.89431 0.94430 1.21234 0.95934 0.99267 0.98632 1.20499 0.96908 0.96277 1.00203 1.20847 0.99045 0.94402 0.95636 0.92613 1.22036 1.01053 0.94520 0.96769 1.21954 1.00192 0.97010 0.96115 1.22363 1.01359 0.96984 0.95040 1.21847 0.90011 0.94045 0.95394 0.92845 0.95187 0.93733 0.93488 0.92830 0.91217 0.94213 0.92251 0.92753 0.93230 0.92949 0.93073 0.91573 0.93126 0.92426 0.90611 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C 0.17 4.04 1.63 -68.87 -0.11 3.92 16 3 H 0.04 0.91 4.33 -51.93 -0.23 0.68 16 4 C -0.55 -14.87 7.61 -34.44 -0.26 -15.13 16 5 H 0.07 2.21 6.24 -52.48 -0.33 1.88 16 6 C 0.08 2.23 5.35 -17.82 -0.10 2.13 16 7 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.86 21.10 25.89 -169.99 -4.40 16.70 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.25 -5.83 5.46 56.52 0.31 -5.52 16 12 N -0.52 -10.60 4.29 -219.65 -0.94 -11.55 16 13 C 0.06 1.23 4.72 -4.09 -0.02 1.22 16 14 C -0.11 -1.78 6.11 -27.55 -0.17 -1.95 16 15 C -0.10 -1.50 5.35 -28.84 -0.15 -1.66 16 16 C -0.08 -1.27 2.62 -91.80 -0.24 -1.51 16 17 H 0.06 0.84 8.13 -51.92 -0.42 0.42 16 18 C -0.11 -1.51 6.20 -25.82 -0.16 -1.67 16 19 C -0.12 -1.68 6.80 -25.78 -0.18 -1.85 16 20 C -0.12 -2.10 6.17 -25.47 -0.16 -2.25 16 21 C 0.10 1.83 2.48 -67.02 -0.17 1.67 16 22 H 0.05 1.18 7.40 -51.93 -0.38 0.79 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 1.01 5.04 -51.93 -0.26 0.74 16 25 H 0.05 1.02 6.47 -51.92 -0.34 0.69 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.07 1.40 6.14 -51.93 -0.32 1.09 16 28 H 0.04 0.88 6.48 -51.93 -0.34 0.55 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.68 7.97 -51.93 -0.41 0.26 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.45 5.72 -51.93 -0.30 1.15 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -28.56 272.83 -8.21 -36.77 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.35 Total: -0.11 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.40 Total: -19.74 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.17 Total: -37.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.40 Total: 16.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.56 -8.21 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227167280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.706 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds