Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46884 * 2 1 4 4 C 1.50698 * 109.47477 * 239.99496 * 2 1 3 5 5 H 1.07993 * 120.00282 * 245.27109 * 4 2 1 6 6 C 1.37874 * 119.99577 * 65.26636 * 4 2 1 7 7 N 1.31514 * 120.00479 * 5.66620 * 6 4 2 8 8 Si 1.86808 * 119.99833 * 185.38540 * 6 4 2 9 9 H 1.48499 * 109.46772 * 85.00103 * 8 6 4 10 10 H 1.48500 * 109.47008 * 205.00209 * 8 6 4 11 11 H 1.48498 * 109.47176 * 325.00538 * 8 6 4 12 12 N 1.46908 * 109.46745 * 119.99554 * 2 1 3 13 13 C 1.48628 * 110.99760 * 54.50776 * 12 2 1 14 14 C 1.55333 * 106.99331 * 233.78170 * 13 12 2 15 15 C 1.53639 * 101.85295 * 337.44283 * 14 13 12 16 16 H 1.08994 * 111.07578 * 281.66079 * 15 14 13 17 17 C 1.51919 * 115.85762 * 153.82805 * 15 14 13 18 18 C 1.53706 * 107.27793 * 184.70913 * 17 15 14 19 19 C 1.52586 * 111.48932 * 58.11328 * 18 17 15 20 20 C 1.52347 * 111.51854 * 305.46933 * 19 18 17 21 21 C 1.45824 * 111.00086 * 295.63494 * 12 2 1 22 22 H 1.09008 * 109.25169 * 35.25405 * 21 12 2 23 23 H 1.09002 * 109.46728 * 175.81707 * 1 2 3 24 24 H 1.08993 * 109.47652 * 295.82286 * 1 2 3 25 25 H 1.08999 * 109.46655 * 55.82206 * 1 2 3 26 26 H 0.96996 * 120.00472 * 179.71581 * 7 6 4 27 27 H 1.08996 * 109.92826 * 353.11571 * 13 12 2 28 28 H 1.09001 * 109.92603 * 114.44714 * 13 12 2 29 29 H 1.09001 * 110.95409 * 219.30376 * 14 13 12 30 30 H 1.09003 * 110.98655 * 95.59521 * 14 13 12 31 31 H 1.08990 * 109.89561 * 304.15572 * 17 15 14 32 32 H 1.09005 * 109.89020 * 65.27444 * 17 15 14 33 33 H 1.08990 * 109.07887 * 178.63139 * 18 17 15 34 34 H 1.09001 * 109.07717 * 297.59700 * 18 17 15 35 35 H 1.09003 * 109.09190 * 65.64476 * 19 18 17 36 36 H 1.09000 * 109.09379 * 184.66624 * 19 18 17 37 37 H 1.09002 * 109.04717 * 297.38106 * 20 19 18 38 38 H 1.08996 * 109.99178 * 176.76296 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.5813 -1.6355 -1.1335 6 6 1.7912 -0.1796 -2.4797 7 7 1.2217 1.0003 -2.5941 8 14 2.2805 -1.1328 -4.0100 9 1 1.2006 -2.0885 -4.3641 10 1 2.4934 -0.1873 -5.1351 11 1 3.5364 -1.8803 -3.7471 12 7 2.0196 -0.6925 1.1996 13 6 1.4376 -2.0562 1.3022 14 6 0.7851 -2.1667 2.7075 15 6 1.5406 -1.0833 3.4923 16 1 2.5290 -1.4327 3.7904 17 6 0.7977 -0.4806 4.6725 18 6 1.6742 0.6501 5.2344 19 6 1.9718 1.7063 4.1742 20 6 2.5879 1.0870 2.9260 21 6 1.6385 0.0261 2.4099 22 1 0.6553 0.4746 2.2671 23 1 -0.3633 -1.0250 -0.0750 24 1 -0.3634 0.4476 0.9250 25 1 -0.3632 0.5773 -0.8502 26 1 1.0558 1.3757 -3.4730 27 1 0.6817 -2.1966 0.5295 28 1 2.2234 -2.8043 1.1975 29 1 0.9562 -3.1523 3.1403 30 1 -0.2808 -1.9430 2.6617 31 1 -0.1598 -0.0782 4.3418 32 1 0.6375 -1.2406 5.4372 33 1 1.1564 1.1204 6.0702 34 1 2.6141 0.2286 5.5910 35 1 1.0428 2.2046 3.8967 36 1 2.6605 2.4428 4.5880 37 1 3.5435 0.6332 3.1887 38 1 2.7371 1.8528 2.1649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228762353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -11.760051 kcal Electronic energy + Delta-G solvation = -16433.034640 eV Core-core repulsion = 14081.411530 eV Total energy + Delta-G solvation = -2351.623109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75552 -35.88281 -33.25176 -31.70140 -29.80942 -27.98771 -26.93210 -25.12848 -22.27035 -21.72783 -20.66987 -19.67341 -18.58125 -15.96946 -15.41389 -14.82594 -14.42770 -14.14403 -13.96143 -13.32477 -13.14142 -12.81098 -12.43760 -11.83934 -11.67528 -11.53382 -11.39940 -10.90994 -10.84781 -10.71594 -10.57289 -10.44256 -10.29559 -10.19442 -10.06123 -9.83342 -9.73479 -9.26841 -8.83399 -8.32607 -7.06502 -5.97935 -3.98523 3.34007 3.40058 3.44029 4.45640 4.71608 4.95291 5.02877 5.31300 5.37058 5.39410 5.49656 5.57517 5.77910 5.83572 5.85993 5.91545 6.01857 6.15863 6.19096 6.25267 6.37328 6.41860 6.48316 6.57726 6.61491 6.71345 6.77524 6.84066 6.91519 6.94091 7.15349 7.48967 7.66125 7.92129 8.17049 8.41923 8.69319 9.07910 9.65534 11.11635 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044767 B = 0.007843 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.311827 B = 3569.323660 C = 3840.430197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.205 3.795 3 H 0.043 0.957 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.514 5.514 13 C 0.049 3.951 14 C -0.135 4.135 15 C -0.099 4.099 16 H 0.078 0.922 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.101 4.101 21 C 0.068 3.932 22 H 0.044 0.956 23 H 0.034 0.966 24 H 0.013 0.987 25 H 0.071 0.929 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -1.856 12.645 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.099 3.901 3 H 0.061 0.939 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.237 5.237 13 C -0.079 4.079 14 C -0.173 4.173 15 C -0.118 4.118 16 H 0.096 0.904 17 C -0.144 4.144 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.041 4.041 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.487 -1.735 12.433 12.563 hybrid contribution -0.727 -0.338 -0.939 1.234 sum -1.213 -2.073 11.495 11.743 Atomic orbital electron populations 1.22387 1.01395 0.99631 0.99213 1.19412 0.89218 0.95014 0.86478 0.93902 1.21081 1.34452 1.08315 0.89830 0.92117 1.24929 0.95501 0.94840 0.98950 1.69942 1.43979 1.15953 1.23571 0.86592 0.78905 0.79716 0.82663 1.20782 1.21398 1.19934 1.63577 1.56759 1.01428 1.01909 1.23064 0.97629 0.92507 0.94719 1.22636 0.99238 0.98269 0.97182 1.22062 0.99291 0.95711 0.94745 0.90408 1.21417 0.98527 0.97183 0.97296 1.21514 0.99645 0.96392 0.97719 1.21294 1.00696 0.97645 0.95754 1.20973 0.98741 0.98125 0.96059 1.22015 0.97256 0.94306 0.90561 0.93849 0.94712 0.96805 0.91038 0.93079 0.91593 0.92144 0.92017 0.92175 0.92110 0.92392 0.92693 0.92371 0.92562 0.92321 0.92020 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.36 37.16 0.31 -3.73 16 2 C 0.21 5.24 2.19 -68.86 -0.15 5.09 16 3 H 0.04 1.22 8.11 -51.93 -0.42 0.80 16 4 C -0.50 -13.88 7.96 -34.44 -0.27 -14.15 16 5 H 0.06 1.70 7.56 -52.49 -0.40 1.31 16 6 C 0.06 1.65 5.28 -17.82 -0.09 1.56 16 7 N -0.90 -25.99 11.99 55.43 0.66 -25.32 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.51 -11.29 5.13 -217.43 -1.12 -12.41 16 13 C 0.05 0.96 5.70 -1.63 -0.01 0.95 16 14 C -0.13 -2.16 6.57 -25.16 -0.17 -2.32 16 15 C -0.10 -1.54 2.60 -89.62 -0.23 -1.78 16 16 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 17 C -0.11 -1.38 5.65 -26.91 -0.15 -1.54 16 18 C -0.12 -1.39 5.84 -26.58 -0.16 -1.54 16 19 C -0.12 -1.56 5.80 -27.28 -0.16 -1.72 16 20 C -0.10 -1.69 5.85 -27.85 -0.16 -1.85 16 21 C 0.07 1.26 1.61 -67.87 -0.11 1.15 16 22 H 0.04 0.87 5.39 -51.92 -0.28 0.59 16 23 H 0.03 0.81 6.13 -51.93 -0.32 0.49 16 24 H 0.01 0.29 6.01 -51.93 -0.31 -0.02 16 25 H 0.07 1.90 6.83 -51.93 -0.35 1.54 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.07 1.41 5.32 -51.93 -0.28 1.14 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.82 7.99 -51.93 -0.41 0.40 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -28.42 282.57 -9.13 -37.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.56 Total: -0.83 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.35 Total: -19.88 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.45 Total: -37.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.42 -9.13 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228762353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.782 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds