Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47247 * 2 1 4 4 C 1.50691 * 109.46980 * 240.00021 * 2 1 3 5 5 H 1.07999 * 120.00385 * 245.41146 * 4 2 1 6 6 C 1.37880 * 120.00399 * 65.40802 * 4 2 1 7 7 N 1.31510 * 119.99532 * 9.76517 * 6 4 2 8 8 Si 1.86798 * 120.00416 * 189.75913 * 6 4 2 9 9 H 1.48503 * 109.46967 * 84.99873 * 8 6 4 10 10 H 1.48498 * 109.47021 * 204.99587 * 8 6 4 11 11 H 1.48498 * 109.47327 * 324.99952 * 8 6 4 12 12 N 1.46901 * 109.46907 * 119.99916 * 2 1 3 13 13 C 1.47083 * 111.92797 * 60.22252 * 12 2 1 14 14 C 1.52853 * 109.12428 * 168.96244 * 13 12 2 15 15 C 1.51760 * 110.13835 * 60.51533 * 14 13 12 16 16 C 1.49341 * 115.14270 * 317.33123 * 15 14 13 17 17 H 1.09004 * 105.34995 * 147.92753 * 16 15 14 18 18 C 1.53199 * 113.91374 * 263.09826 * 16 15 14 19 19 C 1.54350 * 104.05150 * 163.31306 * 18 16 15 20 20 C 1.53743 * 105.93204 * 331.16492 * 19 18 16 21 21 C 1.46745 * 111.00067 * 294.99633 * 12 2 1 22 22 H 1.09004 * 110.02013 * 53.28545 * 21 12 2 23 23 H 1.08992 * 109.46876 * 63.74560 * 1 2 3 24 24 H 1.08996 * 109.47143 * 183.74794 * 1 2 3 25 25 H 1.09005 * 109.46460 * 303.74338 * 1 2 3 26 26 H 0.97006 * 120.00325 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.53317 * 48.85836 * 13 12 2 28 28 H 1.08997 * 109.02742 * 288.76423 * 13 12 2 29 29 H 1.09003 * 109.35789 * 300.30841 * 14 13 12 30 30 H 1.08997 * 109.36031 * 180.71923 * 14 13 12 31 31 H 1.09001 * 108.35141 * 195.86439 * 15 14 13 32 32 H 1.08998 * 108.20641 * 78.69298 * 15 14 13 33 33 H 1.09005 * 110.51338 * 44.67287 * 18 16 15 34 34 H 1.08999 * 110.51782 * 281.95954 * 18 16 15 35 35 H 1.09005 * 110.16345 * 212.05008 * 19 18 16 36 36 H 1.08997 * 110.15999 * 90.27862 * 19 18 16 37 37 H 1.08999 * 109.90843 * 257.22605 * 20 19 18 38 38 H 1.08995 * 109.91033 * 135.95574 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5793 -1.6366 -1.1338 6 6 1.7937 -0.1779 -2.4797 7 7 1.3013 1.0361 -2.5938 8 14 2.1699 -1.1809 -4.0100 9 1 1.0151 -2.0613 -4.3211 10 1 2.4168 -0.2659 -5.1532 11 1 3.3766 -2.0130 -3.7722 12 7 2.0197 -0.6925 1.1995 13 6 1.5639 -2.0899 1.2514 14 6 2.3211 -2.8228 2.3587 15 6 2.0491 -2.1670 3.7000 16 6 2.0647 -0.6737 3.6910 17 1 1.3405 -0.3730 4.4481 18 6 3.3984 -0.0639 4.1341 19 6 3.3244 1.3971 3.6416 20 6 2.4211 1.3779 2.3977 21 6 1.6492 0.0384 2.4168 22 1 0.5755 0.2261 2.4271 23 1 -0.3633 0.4546 -0.9216 24 1 -0.3633 -1.0254 0.0672 25 1 -0.3632 0.5709 0.8546 26 1 1.1336 1.4110 -3.4726 27 1 1.7569 -2.5721 0.2931 28 1 0.4949 -2.1074 1.4636 29 1 3.3903 -2.7878 2.1494 30 1 1.9953 -3.8624 2.3921 31 1 2.8000 -2.5137 4.4100 32 1 1.0709 -2.4979 4.0487 33 1 4.2319 -0.5843 3.6623 34 1 3.4916 -0.0968 5.2196 35 1 4.3195 1.7554 3.3777 36 1 2.8882 2.0319 4.4128 37 1 3.0298 1.4425 1.4958 38 1 1.7195 2.2112 2.4356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251638955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -12.862743 kcal Electronic energy + Delta-G solvation = -16557.618598 eV Core-core repulsion = 14205.947673 eV Total energy + Delta-G solvation = -2351.670926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46573 -35.42656 -33.81379 -32.13472 -28.76239 -28.38242 -26.79650 -25.10916 -23.62994 -21.50583 -20.50875 -19.38119 -17.39827 -16.19759 -15.84107 -14.69400 -14.47540 -14.22614 -13.81019 -13.54005 -13.24008 -12.56016 -12.27000 -11.98245 -11.73263 -11.34865 -10.96008 -10.88086 -10.80900 -10.61239 -10.59342 -10.44057 -10.13850 -10.05610 -9.96005 -9.87595 -9.74280 -9.24905 -8.83538 -8.27350 -6.96397 -5.99458 -3.98158 3.33576 3.40000 3.43068 4.45241 4.86998 5.01999 5.06862 5.23682 5.35285 5.46156 5.60279 5.68804 5.91451 6.01923 6.07697 6.09671 6.13077 6.24444 6.35007 6.39900 6.43741 6.46646 6.60379 6.67018 6.69197 6.76129 6.85724 6.87128 6.90927 6.99693 7.16965 7.56049 7.69670 7.90177 8.22786 8.47892 8.72759 9.07941 9.64920 11.10323 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.008968 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.722090 B = 3121.343421 C = 3468.462090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.526 5.526 13 C 0.063 3.937 14 C -0.113 4.113 15 C -0.099 4.099 16 C -0.077 4.077 17 H 0.044 0.956 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.090 3.910 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -2.847 11.221 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.065 4.065 14 C -0.151 4.151 15 C -0.137 4.137 16 C -0.096 4.096 17 H 0.063 0.937 18 C -0.146 4.146 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.019 4.019 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.706 -2.704 11.068 11.521 hybrid contribution -0.909 -0.399 -0.839 1.299 sum 0.797 -3.103 10.229 10.719 Atomic orbital electron populations 1.22344 1.01716 0.98498 0.99985 1.19305 0.88915 0.95446 0.85853 0.93120 1.21100 1.34823 1.08163 0.89850 0.91982 1.24914 0.95582 0.94677 0.98897 1.69968 1.45582 1.13908 1.23625 0.86639 0.78636 0.80119 0.82787 1.20795 1.21440 1.19929 1.62031 1.60350 1.00996 1.01672 1.21887 0.95271 0.90720 0.98638 1.21267 1.01496 0.97702 0.94646 1.20382 1.00596 0.94664 0.98045 1.20314 0.97357 0.94829 0.97056 0.93712 1.22066 0.97852 0.95840 0.98867 1.22062 0.99756 0.96355 0.97507 1.22346 0.98238 0.96139 0.98772 1.21693 0.96346 0.93444 0.90397 0.94792 0.91291 0.95214 0.96952 0.93073 0.89834 0.96418 0.91701 0.92747 0.92753 0.93474 0.91499 0.92673 0.92140 0.92870 0.89700 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.46 37.16 0.31 -3.70 16 2 C 0.21 5.27 1.94 -68.86 -0.13 5.14 16 3 H 0.05 1.40 6.37 -51.93 -0.33 1.07 16 4 C -0.50 -13.66 7.87 -34.44 -0.27 -13.93 16 5 H 0.06 1.70 6.58 -52.49 -0.35 1.35 16 6 C 0.06 1.68 5.17 -17.82 -0.09 1.59 16 7 N -0.89 -25.62 12.17 55.43 0.67 -24.95 16 8 Si 0.89 21.40 29.55 -169.99 -5.02 16.38 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.29 4.18 -219.90 -0.92 -12.21 16 13 C 0.06 1.25 4.62 -3.80 -0.02 1.23 16 14 C -0.11 -1.83 6.18 -27.44 -0.17 -2.00 16 15 C -0.10 -1.45 5.49 -29.16 -0.16 -1.61 16 16 C -0.08 -1.20 2.47 -92.95 -0.23 -1.43 16 17 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 18 C -0.11 -1.55 6.20 -25.92 -0.16 -1.71 16 19 C -0.12 -1.74 6.79 -25.64 -0.17 -1.92 16 20 C -0.12 -2.09 5.81 -25.50 -0.15 -2.24 16 21 C 0.09 1.69 2.51 -67.58 -0.17 1.52 16 22 H 0.03 0.68 6.26 -51.93 -0.33 0.35 16 23 H 0.07 1.82 6.83 -51.93 -0.35 1.47 16 24 H 0.03 0.69 6.54 -51.93 -0.34 0.35 16 25 H 0.01 0.26 6.58 -51.93 -0.34 -0.08 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.08 1.80 6.17 -51.93 -0.32 1.47 16 28 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.70 7.83 -51.93 -0.41 0.30 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.75 6.60 -51.93 -0.34 1.40 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -27.77 278.88 -8.88 -36.65 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.40 Total: -1.02 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.41 Total: -19.05 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.25 Total: -37.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.77 -8.88 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251638955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.784 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds