Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47167 * 2 1 4 4 C 1.50702 * 109.47012 * 239.99972 * 2 1 3 5 5 H 1.08002 * 120.00130 * 239.99598 * 4 2 1 6 6 C 1.37876 * 119.99856 * 59.99989 * 4 2 1 7 7 N 1.31511 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46793 * 90.00462 * 8 6 4 10 10 H 1.48503 * 109.47136 * 210.00299 * 8 6 4 11 11 H 1.48501 * 109.47157 * 330.00357 * 8 6 4 12 12 N 1.46904 * 109.47039 * 120.00276 * 2 1 3 13 13 C 1.49244 * 110.99907 * 45.11762 * 12 2 1 14 14 C 1.55070 * 102.72485 * 198.55604 * 13 12 2 15 15 C 1.55747 * 103.12498 * 36.46008 * 14 13 12 16 16 H 1.08993 * 109.66565 * 100.29159 * 15 14 13 17 17 C 1.51624 * 107.42442 * 219.11813 * 15 14 13 18 18 C 1.52230 * 112.78857 * 152.04930 * 17 15 14 19 19 C 1.53415 * 108.14924 * 301.15657 * 18 17 15 20 20 C 1.52545 * 107.68872 * 68.11384 * 19 18 17 21 21 C 1.47389 * 110.99996 * 290.29878 * 12 2 1 22 22 H 1.09005 * 104.32443 * 40.55763 * 21 12 2 23 23 H 1.09000 * 109.47440 * 172.13082 * 1 2 3 24 24 H 1.09002 * 109.47338 * 292.13296 * 1 2 3 25 25 H 1.09002 * 109.47665 * 52.13489 * 1 2 3 26 26 H 0.97005 * 119.99586 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.76425 * 316.86483 * 13 12 2 28 28 H 1.09000 * 110.75981 * 80.06613 * 13 12 2 29 29 H 1.08996 * 110.68366 * 154.86616 * 14 13 12 30 30 H 1.08993 * 110.68486 * 277.87796 * 14 13 12 31 31 H 1.09002 * 108.82057 * 31.19229 * 17 15 14 32 32 H 1.09002 * 108.81992 * 272.89851 * 17 15 14 33 33 H 1.09001 * 109.72646 * 181.49138 * 18 17 15 34 34 H 1.09000 * 109.72866 * 60.81953 * 18 17 15 35 35 H 1.08999 * 109.81981 * 187.66274 * 19 18 17 36 36 H 1.08999 * 109.81408 * 308.56766 * 19 18 17 37 37 H 1.09003 * 108.73474 * 66.13991 * 20 19 18 38 38 H 1.09000 * 108.73795 * 184.34679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3224 -1.1196 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 7 2.0196 -0.6926 1.1994 13 6 1.2709 -1.9635 1.4262 14 6 1.5661 -2.2725 2.9169 15 6 1.5847 -0.8605 3.5738 16 1 0.6336 -0.6755 4.0729 17 6 2.7020 -0.8513 4.5988 18 6 3.2861 0.5367 4.8218 19 6 3.8211 1.0514 3.4793 20 6 2.6238 1.2958 2.5662 21 6 1.7456 0.0965 2.4138 22 1 0.7445 0.4973 2.2548 23 1 -0.3634 -1.0180 -0.1407 24 1 -0.3634 0.3872 0.9519 25 1 -0.3634 0.6308 -0.8113 26 1 0.7094 1.1618 -3.4844 27 1 0.2028 -1.8166 1.2663 28 1 1.6511 -2.7562 0.7819 29 1 0.7748 -2.8867 3.3468 30 1 2.5336 -2.7628 3.0242 31 1 3.4959 -1.5166 4.2595 32 1 2.3133 -1.2255 5.5459 33 1 4.0996 0.4816 5.5453 34 1 2.5101 1.2076 5.1903 35 1 4.3661 1.9831 3.6313 36 1 4.4796 0.3058 3.0336 37 1 2.0316 2.1136 2.9768 38 1 2.9883 1.5882 1.5815 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252894328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -4.374679 kcal Electronic energy + Delta-G solvation = -16466.006876 eV Core-core repulsion = 14114.704020 eV Total energy + Delta-G solvation = -2351.302855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.69354 -35.70803 -33.35338 -31.97196 -29.76434 -28.03879 -26.66438 -25.21180 -22.38287 -22.12213 -20.92425 -19.53633 -17.55575 -16.34704 -15.49288 -14.95440 -14.25203 -14.16978 -13.79315 -13.54916 -13.14130 -12.76164 -12.34793 -11.78748 -11.73256 -11.46777 -11.15241 -10.93074 -10.88112 -10.75722 -10.54094 -10.39757 -10.22961 -10.04240 -9.97169 -9.84941 -9.56793 -9.39509 -8.82605 -8.34312 -7.09916 -5.96809 -3.99135 3.33393 3.39802 3.44535 4.44896 4.87007 4.95550 5.06970 5.24671 5.35292 5.44481 5.55760 5.63253 5.79302 5.87395 5.94856 6.01102 6.06292 6.20398 6.22952 6.26840 6.41627 6.47449 6.61235 6.64922 6.67551 6.72776 6.77168 6.85538 6.90473 6.94485 7.15579 7.44308 7.73068 7.90877 8.14931 8.40724 8.64782 9.07399 9.65577 11.11044 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.008047 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.623084 B = 3478.589190 C = 3646.233679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.201 3.799 3 H 0.039 0.961 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.498 5.498 13 C 0.035 3.965 14 C -0.123 4.123 15 C -0.080 4.080 16 H 0.061 0.939 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.098 4.098 21 C 0.068 3.932 22 H 0.021 0.979 23 H 0.035 0.965 24 H 0.008 0.992 25 H 0.082 0.918 26 H 0.259 0.741 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -1.757 12.169 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.094 3.906 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.222 5.222 13 C -0.093 4.093 14 C -0.161 4.161 15 C -0.099 4.099 16 H 0.080 0.920 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.136 4.136 21 C -0.041 4.041 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.027 0.973 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.040 -1.712 11.916 12.210 hybrid contribution -0.807 -0.224 -0.893 1.224 sum 1.233 -1.936 11.023 11.260 Atomic orbital electron populations 1.22382 1.00987 1.00512 0.98861 1.19419 0.89695 0.94728 0.86739 0.94344 1.21071 1.30305 1.12292 0.89521 0.92078 1.24933 0.95348 0.95162 0.98970 1.69910 1.37361 1.23106 1.23266 0.86536 0.79247 0.79258 0.82588 1.20892 1.21365 1.19871 1.65285 1.52338 1.03155 1.01453 1.23246 0.97313 0.94597 0.94136 1.22986 1.01041 0.95683 0.96408 1.21144 0.97902 0.95726 0.95105 0.92027 1.21171 0.97983 0.97244 0.97816 1.21463 0.99652 0.96964 0.97410 1.21461 0.97809 1.00515 0.95161 1.20588 0.96206 0.96052 1.00734 1.20733 0.97830 0.93947 0.91606 0.96100 0.94623 0.97274 0.89911 0.93130 0.93464 0.90730 0.92566 0.91313 0.91995 0.93123 0.92602 0.92464 0.92700 0.91379 0.93194 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 7.65 37.15 0.28 -3.85 16 2 C 0.20 5.11 2.18 -68.86 -0.15 4.96 16 3 H 0.04 1.07 6.79 -51.93 -0.35 0.72 16 4 C -0.49 -13.73 8.43 -34.44 -0.29 -14.02 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.86 11.42 55.43 0.63 -25.22 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.50 -10.90 5.12 -219.54 -1.12 -12.02 16 13 C 0.04 0.70 5.79 -1.42 -0.01 0.69 16 14 C -0.12 -1.96 6.54 -24.17 -0.16 -2.11 16 15 C -0.08 -1.25 3.21 -90.74 -0.29 -1.54 16 16 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.10 -1.40 5.25 -27.82 -0.15 -1.54 16 18 C -0.12 -1.49 5.96 -26.91 -0.16 -1.65 16 19 C -0.11 -1.64 6.05 -26.75 -0.16 -1.80 16 20 C -0.10 -1.70 5.40 -28.73 -0.16 -1.86 16 21 C 0.07 1.27 2.02 -70.10 -0.14 1.13 16 22 H 0.02 0.43 5.47 -51.93 -0.28 0.14 16 23 H 0.03 0.86 6.49 -51.93 -0.34 0.52 16 24 H 0.01 0.19 6.10 -51.93 -0.32 -0.12 16 25 H 0.08 2.23 6.33 -51.93 -0.33 1.90 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 0.96 5.51 -51.93 -0.29 0.68 16 28 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.06 7.22 -51.93 -0.38 0.68 16 31 H 0.06 0.86 7.20 -51.93 -0.37 0.48 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.47 6.74 -51.93 -0.35 1.12 16 LS Contribution 278.35 15.07 4.19 4.19 Total: -1.00 -28.28 278.35 -9.14 -37.42 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.35 Total: -0.90 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.47 Total: -20.12 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.49 Total: -37.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.28 -9.14 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252894328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.047 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds