Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31659 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46941 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47194 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.47133 * 60.00459 * 3 2 1 7 7 C 1.38679 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99743 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99754 * 185.11842 * 9 7 2 11 11 C 1.39112 * 120.02791 * 265.47215 * 10 9 7 12 12 C 1.38058 * 120.05363 * 179.77323 * 11 10 9 13 13 C 1.38653 * 120.14133 * 0.50036 * 12 11 10 14 14 C 1.39385 * 119.97848 * 359.50067 * 13 12 11 15 15 C 1.38387 * 119.91675 * 0.25341 * 14 13 12 16 16 O 1.36509 * 108.62759 * 180.25788 * 14 13 12 17 17 C 1.43969 * 105.49484 * 342.68971 * 16 14 13 18 18 O 1.36567 * 131.42668 * 179.81528 * 13 12 11 19 19 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 20 20 H 1.08003 * 119.97057 * 0.02613 * 11 10 9 21 21 H 1.07997 * 119.92602 * 180.29984 * 12 11 10 22 22 H 1.08001 * 120.01802 * 180.02562 * 15 14 13 23 23 H 1.09008 * 110.57148 * 268.60428 * 17 16 14 24 24 H 1.08999 * 110.57230 * 145.73986 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 3.7106 1.3462 -0.0006 5 1 1.8919 2.3964 -1.2126 6 1 1.8919 2.3963 1.2125 7 6 2.0099 -1.2010 -0.0005 8 1 3.0899 -1.2010 -0.0010 9 16 1.1288 -2.7269 -0.0005 10 6 2.4726 -3.8561 0.1535 11 6 3.0348 -4.4284 -0.9830 12 6 4.0908 -5.3096 -0.8632 13 6 4.5875 -5.6349 0.3897 14 6 4.0269 -5.0636 1.5309 15 6 2.9717 -4.1763 1.4115 16 8 4.6904 -5.5367 2.6262 17 6 5.3895 -6.7115 2.1746 18 8 5.6017 -6.4657 0.7719 19 1 -0.4850 0.8400 0.0004 20 1 2.6475 -4.1799 -1.9601 21 1 4.5288 -5.7489 -1.7472 22 1 2.5364 -3.7324 2.2946 23 1 4.7765 -7.6012 2.3190 24 1 6.3424 -6.8134 2.6940 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259160867.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -59.277653 kcal Electronic energy + Delta-G solvation = -12527.810001 eV Core-core repulsion = 10111.661300 eV Total energy + Delta-G solvation = -2416.148702 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.029 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.10946 -38.64749 -37.29603 -34.63268 -31.68636 -30.90665 -27.73088 -26.72910 -23.99524 -23.91538 -20.10683 -18.94960 -18.82435 -18.25801 -17.37199 -16.91041 -16.12597 -15.47681 -15.19677 -14.87761 -14.77487 -14.03062 -13.94364 -13.84904 -13.25835 -12.96327 -12.74022 -12.27576 -12.03989 -11.63004 -11.21578 -10.63201 -9.84400 -9.09453 -8.77862 -8.36628 -6.17629 -0.05314 0.20678 1.31768 1.38451 1.46917 1.57534 1.83735 2.24756 2.50895 2.54777 2.95571 3.41719 3.44275 3.82239 4.03303 4.14474 4.24988 4.29290 4.52713 4.83388 5.00359 5.12176 5.33013 5.41358 5.42847 6.09007 6.18700 7.03411 8.69162 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.045088 B = 0.007231 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.860963 B = 3871.136494 C = 4025.145611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.068 0.932 9 S -0.070 6.070 10 C -0.109 4.109 11 C -0.072 4.072 12 C -0.099 4.099 13 C 0.031 3.969 14 C 0.011 3.989 15 C -0.078 4.078 16 O -0.327 6.327 17 C 0.203 3.797 18 O -0.317 6.317 19 H 0.274 0.726 20 H 0.154 0.846 21 H 0.169 0.831 22 H 0.125 0.875 23 H 0.106 0.894 24 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -11.170 1.162 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.086 0.914 9 S 0.165 5.835 10 C -0.221 4.221 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.014 4.014 14 C -0.035 4.035 15 C -0.100 4.100 16 O -0.244 6.244 17 C 0.093 3.907 18 O -0.233 6.233 19 H 0.084 0.916 20 H 0.171 0.829 21 H 0.187 0.813 22 H 0.143 0.857 23 H 0.124 0.876 24 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.387 -11.255 1.194 14.087 hybrid contribution 1.519 1.068 0.482 1.919 sum 9.906 -10.187 1.676 14.308 Atomic orbital electron populations 1.70112 1.07396 1.28782 1.47908 1.25956 0.96033 1.02735 0.93657 0.85008 0.78282 0.76875 0.78489 1.19194 1.19273 1.19628 1.23137 0.94829 0.91692 1.58863 0.91350 1.83477 1.07089 0.97741 1.95187 1.22289 1.03012 1.02339 0.94413 1.21644 0.94299 0.94603 0.98737 1.20353 0.96789 0.99987 0.94776 1.20034 0.90197 0.96010 0.95115 1.19833 0.96775 1.01245 0.85609 1.20637 0.93733 0.97414 0.98217 1.87318 1.61773 1.43618 1.31667 1.26179 1.00054 0.87817 0.76693 1.87308 1.44745 1.64069 1.27197 0.91649 0.82855 0.81344 0.85655 0.87616 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.11 13.22 21.63 0.29 -52.82 14 2 C 0.02 1.20 5.49 84.82 0.47 1.67 14 3 Si 0.99 43.63 29.55 68.60 2.03 45.66 14 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 14 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 14 7 C -0.54 -30.67 9.46 67.93 0.64 -30.02 14 8 H 0.07 3.89 7.79 -2.91 -0.02 3.86 14 9 S -0.07 -3.65 21.41 -56.49 -1.21 -4.86 14 10 C -0.11 -4.73 5.45 22.68 0.12 -4.61 14 11 C -0.07 -2.59 9.79 22.44 0.22 -2.37 14 12 C -0.10 -2.99 10.05 22.33 0.22 -2.77 14 13 C 0.03 1.00 7.16 22.65 0.16 1.17 14 14 C 0.01 0.41 7.14 22.58 0.16 0.57 14 15 C -0.08 -3.23 9.81 22.51 0.22 -3.01 14 16 O -0.33 -10.20 11.40 -76.16 -0.87 -11.07 14 17 C 0.20 4.25 8.89 113.37 1.01 5.26 14 18 O -0.32 -8.65 11.41 -76.85 -0.88 -9.53 14 19 H 0.27 14.87 8.31 -92.71 -0.77 14.10 14 20 H 0.15 5.07 8.06 -2.91 -0.02 5.05 14 21 H 0.17 3.79 8.06 -2.91 -0.02 3.76 14 22 H 0.13 5.29 8.06 -2.91 -0.02 5.27 14 23 H 0.11 1.67 8.14 -2.38 -0.02 1.65 14 24 H 0.17 2.09 8.14 -2.39 -0.02 2.07 14 Total: -1.00 -66.91 238.10 3.80 -63.10 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.22 Total: 3.62 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.23 Total: -34.11 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.29 Total: -52.82 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.74 Total: -20.59 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.21 Total: -4.86 kcal Total: -66.91 3.80 -63.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259160867.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.827 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds