Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00038 * 2 1 4 4 H 1.48493 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46720 * 300.00329 * 3 2 1 6 6 H 1.48502 * 109.46788 * 59.99881 * 3 2 1 7 7 C 1.37874 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99850 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.81451 * 303.32358 * 9 7 2 11 11 C 1.54710 * 110.74647 * 180.02562 * 9 7 2 12 12 C 1.51655 * 101.94259 * 216.44563 * 11 9 7 13 13 C 1.37738 * 132.15193 * 195.60950 * 12 11 9 14 14 C 1.38453 * 119.96907 * 179.10707 * 13 12 11 15 15 Cl 1.73592 * 120.13195 * 180.02562 * 14 13 12 16 16 C 1.38392 * 119.73793 * 0.02562 * 14 13 12 17 17 C 1.37925 * 120.33447 * 0.18469 * 16 14 13 18 18 C 1.38875 * 107.04654 * 15.14915 * 12 11 9 19 19 O 1.36163 * 111.22027 * 1.42659 * 18 12 11 20 20 H 0.97000 * 120.00233 * 359.97438 * 1 2 3 21 21 H 1.08991 * 110.93740 * 98.28326 * 11 9 7 22 22 H 1.09000 * 110.96801 * 334.61668 * 11 9 7 23 23 H 1.08000 * 120.01969 * 359.08986 * 13 12 11 24 24 H 1.08000 * 119.83104 * 180.21162 * 16 14 13 25 25 H 1.08001 * 119.87023 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.5729 -2.5541 0.8533 11 6 2.2298 -3.6971 0.0028 12 6 1.5041 -4.6961 -0.8778 13 6 1.6710 -6.0495 -1.0719 14 6 0.8372 -6.7314 -1.9417 15 17 1.0433 -8.4372 -2.1890 16 6 -0.1612 -6.0478 -2.6132 17 6 -0.3263 -4.6918 -2.4228 18 6 0.5104 -3.9983 -1.5517 19 8 0.5346 -2.6748 -1.2325 20 1 -0.4850 0.8400 0.0004 21 1 2.3627 -4.0906 1.0105 22 1 3.1887 -3.4177 -0.4338 23 1 2.4521 -6.5785 -0.5460 24 1 -0.8147 -6.5789 -3.2895 25 1 -1.1077 -4.1656 -2.9510 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259327510.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = -23.272646 kcal Electronic energy + Delta-G solvation = -12705.424999 eV Core-core repulsion = 10288.793886 eV Total energy + Delta-G solvation = -2416.631114 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.12961 -37.11447 -35.71055 -32.93708 -31.85196 -29.19762 -28.80060 -25.25920 -22.04356 -21.31444 -20.92738 -17.05559 -16.52749 -15.93284 -15.63961 -14.66108 -14.15739 -13.60737 -13.07997 -12.88826 -12.56498 -12.24709 -11.84472 -11.59990 -11.24517 -11.07133 -10.86848 -10.66934 -10.40639 -10.30218 -9.55535 -9.28718 -8.78470 -8.52638 -7.25309 -6.29067 -4.45603 1.67361 1.73982 2.46941 3.17484 3.26185 3.29880 4.04977 4.22305 4.40952 5.10239 5.18003 5.27276 5.63212 5.70712 5.76299 6.09004 6.19774 6.40610 6.46815 6.59470 6.61369 6.96441 7.06961 7.26298 7.63310 7.86571 8.33115 8.69531 9.28404 10.78305 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.075577 B = 0.006315 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.396315 B = 4433.135462 C = 4675.327112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.207 3.793 10 H 0.053 0.947 11 C -0.102 4.102 12 C -0.177 4.177 13 C -0.063 4.063 14 C -0.091 4.091 15 Cl -0.092 7.092 16 C -0.076 4.076 17 C -0.157 4.157 18 C 0.141 3.859 19 O -0.281 6.281 20 H 0.267 0.733 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 -9.987 -2.402 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.154 3.846 10 H 0.071 0.929 11 C -0.139 4.139 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.118 4.118 15 Cl -0.063 7.063 16 C -0.095 4.095 17 C -0.176 4.176 18 C 0.091 3.909 19 O -0.193 6.193 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.142 0.858 24 H 0.147 0.853 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.903 -9.799 -2.505 10.155 hybrid contribution 0.462 0.594 -0.003 0.753 sum 1.365 -9.205 -2.508 9.638 Atomic orbital electron populations 1.70016 1.06283 1.27474 1.45683 1.25178 0.94925 0.99995 0.92915 0.86376 0.80200 0.82612 0.77928 1.19300 1.20537 1.20540 1.21093 0.93096 0.89069 1.53873 0.90875 1.21165 0.88249 0.93067 0.82116 0.92922 1.21989 1.00244 0.93797 0.97858 1.21081 0.99409 0.93989 1.03376 1.20023 0.98448 0.92530 0.97151 1.20393 1.02298 0.84153 1.04924 1.98307 1.97206 1.14427 1.96368 1.20561 0.96834 0.93232 0.98835 1.20183 1.01427 0.92805 1.03192 1.20232 0.91329 0.87002 0.92343 1.87439 1.72948 1.16377 1.42575 0.92302 0.90755 0.89916 0.85767 0.85255 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.16 55.43 0.73 -23.65 15 2 C 0.08 2.09 5.45 -17.82 -0.10 2.00 15 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.53 -14.29 8.80 -34.44 -0.30 -14.59 15 8 H 0.07 1.87 7.62 -52.49 -0.40 1.47 15 9 C 0.21 5.18 3.36 -26.98 -0.09 5.09 15 10 H 0.05 1.39 8.14 -51.93 -0.42 0.97 15 11 C -0.10 -2.09 6.63 -26.51 -0.18 -2.26 15 12 C -0.18 -3.51 6.27 -104.10 -0.65 -4.16 15 13 C -0.06 -1.07 9.82 -39.68 -0.39 -1.46 15 14 C -0.09 -1.46 6.33 -39.45 -0.25 -1.71 15 15 Cl -0.09 -1.26 28.97 -51.86 -1.50 -2.76 15 16 C -0.08 -1.20 9.81 -39.64 -0.39 -1.59 15 17 C -0.16 -2.86 10.06 -39.31 -0.40 -3.26 15 18 C 0.14 3.04 7.03 -38.96 -0.27 2.77 15 19 O -0.28 -7.28 10.64 -20.26 -0.22 -7.50 15 20 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 21 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 22 H 0.08 1.67 7.79 -51.93 -0.40 1.26 15 23 H 0.12 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 241.36 15.07 3.64 3.64 Total: -1.00 -28.11 241.36 -7.44 -35.55 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.05 Total: -1.44 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.02 Total: -19.17 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.73 Total: -23.65 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.22 Total: -7.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.11 -7.44 -35.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259327510.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.278 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds