Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.66446 * 59.01607 * 9 7 2 11 11 C 1.54700 * 110.74954 * 182.23592 * 9 7 2 12 12 C 1.51642 * 101.92835 * 143.60862 * 11 9 7 13 13 C 1.37745 * 132.15595 * 164.59048 * 12 11 9 14 14 C 1.38451 * 119.97191 * 180.36423 * 13 12 11 15 15 Cl 1.73596 * 120.13186 * 180.02562 * 14 13 12 16 16 C 1.38387 * 119.73293 * 359.97438 * 14 13 12 17 17 C 1.37925 * 120.34085 * 359.83562 * 16 14 13 18 18 C 1.38866 * 107.04638 * 344.61491 * 12 11 9 19 19 O 1.36406 * 111.31893 * 359.08377 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08997 * 110.93816 * 261.77101 * 11 9 7 22 22 H 1.09007 * 110.93488 * 25.45358 * 11 9 7 23 23 H 1.08009 * 120.01674 * 0.34201 * 13 12 11 24 24 H 1.08004 * 119.82847 * 179.85069 * 16 14 13 25 25 H 1.08003 * 119.87001 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6077 -2.5680 -0.8826 11 6 2.2285 -3.6968 0.0529 12 6 1.4684 -4.6798 0.9221 13 6 1.6288 -6.0289 1.1495 14 6 0.7674 -6.6931 2.0060 15 17 0.9661 -8.3931 2.2961 16 6 -0.2520 -5.9962 2.6307 17 6 -0.4110 -4.6445 2.4068 18 6 0.4531 -3.9689 1.5484 19 8 0.4842 -2.6501 1.2015 20 1 -0.4850 0.8401 -0.0004 21 1 2.4001 -4.1082 -0.9418 22 1 3.1695 -3.4090 0.5216 23 1 2.4260 -6.5684 0.6596 24 1 -0.9264 -6.5133 3.2973 25 1 -1.2089 -4.1080 2.8987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259327512.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -23.122057 kcal Electronic energy + Delta-G solvation = -12710.278184 eV Core-core repulsion = 10293.653600 eV Total energy + Delta-G solvation = -2416.624584 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10954 -37.10765 -35.70906 -32.91586 -31.85098 -29.19949 -28.79491 -25.25191 -22.03667 -21.31361 -20.92339 -17.04509 -16.52089 -15.91596 -15.63472 -14.65509 -14.15448 -13.60292 -13.07549 -12.88761 -12.56021 -12.23625 -11.84668 -11.59732 -11.24658 -11.04436 -10.87505 -10.67758 -10.41251 -10.30465 -9.55681 -9.29684 -8.76232 -8.52620 -7.25272 -6.27567 -4.44158 1.67350 1.73977 2.46836 3.18671 3.26329 3.29570 4.05299 4.23210 4.41607 5.10313 5.18032 5.27019 5.63224 5.70439 5.76167 6.08996 6.19645 6.40528 6.46594 6.59365 6.61182 6.96300 7.07053 7.26480 7.64144 7.87033 8.31786 8.70193 9.29517 10.79714 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.075311 B = 0.006334 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.703959 B = 4419.267144 C = 4664.845583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.207 3.793 10 H 0.051 0.949 11 C -0.101 4.101 12 C -0.177 4.177 13 C -0.063 4.063 14 C -0.091 4.091 15 Cl -0.091 7.091 16 C -0.076 4.076 17 C -0.156 4.156 18 C 0.140 3.860 19 O -0.278 6.278 20 H 0.267 0.733 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -9.973 2.535 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.154 3.846 10 H 0.069 0.931 11 C -0.139 4.139 12 C -0.178 4.178 13 C -0.082 4.082 14 C -0.117 4.117 15 Cl -0.063 7.063 16 C -0.095 4.095 17 C -0.175 4.175 18 C 0.090 3.910 19 O -0.190 6.190 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.142 0.858 24 H 0.147 0.853 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.793 -9.781 2.638 10.161 hybrid contribution 0.479 0.595 -0.001 0.764 sum 1.272 -9.185 2.637 9.641 Atomic orbital electron populations 1.70016 1.06258 1.27517 1.45602 1.25168 0.94923 0.99939 0.92970 0.86433 0.79944 0.82338 0.78406 1.20168 1.20811 1.19453 1.21051 0.93049 0.89111 1.54182 0.90904 1.21132 0.87400 0.93157 0.82892 0.93104 1.21986 0.99985 0.93948 0.97939 1.21060 0.99114 0.94012 1.03610 1.20024 0.98364 0.92695 0.97077 1.20392 1.01735 0.84350 1.05267 1.98307 1.97335 1.15002 1.95659 1.20562 0.96769 0.93162 0.98987 1.20183 1.01069 0.93020 1.03272 1.20294 0.91499 0.87009 0.92203 1.87505 1.70874 1.16768 1.43868 0.92286 0.90757 0.89884 0.85760 0.85253 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 13.06 55.43 0.72 -23.69 15 2 C 0.08 2.10 5.43 -17.82 -0.10 2.00 15 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.54 -14.37 8.80 -34.44 -0.30 -14.67 15 8 H 0.07 1.86 7.64 -52.49 -0.40 1.46 15 9 C 0.21 5.19 3.39 -26.99 -0.09 5.10 15 10 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 11 C -0.10 -2.08 6.63 -26.52 -0.18 -2.26 15 12 C -0.18 -3.50 6.27 -104.11 -0.65 -4.15 15 13 C -0.06 -1.07 9.82 -39.68 -0.39 -1.46 15 14 C -0.09 -1.46 6.33 -39.45 -0.25 -1.71 15 15 Cl -0.09 -1.26 28.97 -51.86 -1.50 -2.76 15 16 C -0.08 -1.20 9.81 -39.64 -0.39 -1.59 15 17 C -0.16 -2.85 10.06 -39.31 -0.40 -3.25 15 18 C 0.14 3.02 7.04 -38.96 -0.27 2.75 15 19 O -0.28 -7.21 10.52 -21.05 -0.22 -7.44 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.08 1.67 7.81 -51.93 -0.41 1.27 15 23 H 0.12 1.84 8.06 -52.48 -0.42 1.41 15 24 H 0.13 1.67 8.06 -52.48 -0.42 1.25 15 25 H 0.13 2.17 8.06 -52.48 -0.42 1.74 15 LS Contribution 241.20 15.07 3.63 3.63 Total: -1.00 -28.14 241.20 -7.46 -35.60 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -2.06 Total: -1.49 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.02 Total: -19.23 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.72 Total: -23.69 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.22 Total: -7.44 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.14 -7.46 -35.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259327512.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.478 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds