Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.66446 * 59.01607 * 9 7 2 11 11 C 1.54700 * 110.74954 * 182.23592 * 9 7 2 12 12 C 1.51642 * 101.92835 * 143.60862 * 11 9 7 13 13 C 1.37745 * 132.15595 * 164.59048 * 12 11 9 14 14 C 1.38451 * 119.97191 * 180.36423 * 13 12 11 15 15 Cl 1.73596 * 120.13186 * 180.02562 * 14 13 12 16 16 C 1.38387 * 119.73293 * 359.97438 * 14 13 12 17 17 C 1.37925 * 120.34085 * 359.83562 * 16 14 13 18 18 C 1.38866 * 107.04638 * 344.61491 * 12 11 9 19 19 O 1.36406 * 111.31893 * 359.08377 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08997 * 110.93816 * 261.77101 * 11 9 7 22 22 H 1.09007 * 110.93488 * 25.45358 * 11 9 7 23 23 H 1.08009 * 120.01674 * 0.34201 * 13 12 11 24 24 H 1.08004 * 119.82847 * 179.85069 * 16 14 13 25 25 H 1.08003 * 119.87001 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6077 -2.5680 -0.8826 11 6 2.2285 -3.6968 0.0529 12 6 1.4684 -4.6798 0.9221 13 6 1.6288 -6.0289 1.1495 14 6 0.7674 -6.6931 2.0060 15 17 0.9661 -8.3931 2.2961 16 6 -0.2520 -5.9962 2.6307 17 6 -0.4110 -4.6445 2.4068 18 6 0.4531 -3.9689 1.5484 19 8 0.4842 -2.6501 1.2015 20 1 -0.4850 0.8401 -0.0004 21 1 2.4001 -4.1082 -0.9418 22 1 3.1695 -3.4090 0.5216 23 1 2.4260 -6.5684 0.6596 24 1 -0.9264 -6.5133 3.2973 25 1 -1.2089 -4.1080 2.8987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259327512.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = -39.039903 kcal Electronic energy + Delta-G solvation = -12710.968434 eV Core-core repulsion = 10293.653600 eV Total energy + Delta-G solvation = -2417.314833 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.71158 -38.56351 -37.03098 -34.89322 -33.44968 -30.70115 -30.48282 -27.08545 -23.61438 -22.93100 -22.50589 -18.99222 -18.04787 -17.54373 -17.10520 -16.54953 -15.81855 -15.06848 -14.63234 -14.33685 -14.05393 -13.94982 -13.44674 -13.20418 -12.87593 -12.80435 -12.43599 -12.19981 -12.03514 -11.73150 -11.31583 -11.08120 -10.75861 -9.91543 -8.82898 -8.29723 -6.54130 0.26690 0.30191 1.18547 1.40646 1.42129 1.53686 2.34279 2.57771 2.75296 3.26957 3.65603 3.87848 4.09413 4.26891 4.33804 4.50302 4.62755 4.89950 4.95905 5.11751 5.21520 5.34835 5.53409 5.59257 5.67400 5.91760 6.46314 6.78927 7.24278 8.78761 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.075311 B = 0.006334 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.703959 B = 4419.267144 C = 4664.845583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.198 3.802 10 H 0.019 0.981 11 C -0.090 4.090 12 C -0.184 4.184 13 C -0.059 4.059 14 C -0.083 4.083 15 Cl -0.061 7.061 16 C -0.066 4.066 17 C -0.156 4.156 18 C 0.091 3.909 19 O -0.319 6.319 20 H 0.268 0.732 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.151 0.849 24 H 0.166 0.834 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -11.703 3.237 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.145 3.855 10 H 0.037 0.963 11 C -0.127 4.127 12 C -0.185 4.185 13 C -0.078 4.078 14 C -0.109 4.109 15 Cl -0.032 7.032 16 C -0.084 4.084 17 C -0.175 4.175 18 C 0.043 3.957 19 O -0.233 6.233 20 H 0.077 0.923 21 H 0.114 0.886 22 H 0.103 0.897 23 H 0.168 0.832 24 H 0.183 0.817 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.660 -11.544 3.342 12.132 hybrid contribution 0.164 0.886 -0.155 0.914 sum 1.823 -10.657 3.188 11.272 Atomic orbital electron populations 1.70154 1.07984 1.28359 1.47244 1.26102 0.95730 1.03749 0.92451 0.85335 0.78574 0.77552 0.78880 1.18963 1.20749 1.18644 1.21469 0.93599 0.90341 1.54017 0.90303 1.20983 0.87765 0.94691 0.82035 0.96307 1.21804 0.98828 0.92609 0.99475 1.21048 0.98717 0.95035 1.03695 1.20267 0.99053 0.91500 0.96969 1.20585 1.00725 0.85893 1.03746 1.98328 1.97188 1.12340 1.95394 1.20915 0.96892 0.91997 0.98610 1.20444 1.00600 0.94110 1.02369 1.20699 0.94090 0.85936 0.94980 1.87361 1.72011 1.19680 1.44246 0.92281 0.88646 0.89734 0.83157 0.81682 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.28 13.06 21.45 0.28 -53.00 15 2 C 0.02 1.28 5.43 84.66 0.46 1.74 15 3 Si 0.97 42.51 29.54 68.60 2.03 44.53 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 15 7 C -0.56 -30.74 8.80 25.60 0.23 -30.51 15 8 H 0.08 4.09 7.64 -2.91 -0.02 4.07 15 9 C 0.20 10.40 3.39 30.43 0.10 10.51 15 10 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 11 C -0.09 -3.73 6.63 30.73 0.20 -3.52 15 12 C -0.18 -7.17 6.27 -19.53 -0.12 -7.30 15 13 C -0.06 -1.86 9.82 22.20 0.22 -1.65 15 14 C -0.08 -2.37 6.33 22.36 0.14 -2.23 15 15 Cl -0.06 -1.44 28.97 -2.72 -0.08 -1.51 15 16 C -0.07 -1.88 9.81 22.23 0.22 -1.66 15 17 C -0.16 -5.57 10.06 22.45 0.23 -5.35 15 18 C 0.09 3.99 7.04 22.67 0.16 4.15 15 19 O -0.32 -17.35 10.52 -98.22 -1.03 -18.38 15 20 H 0.27 14.83 8.31 -92.70 -0.77 14.06 15 21 H 0.10 3.42 8.14 -2.39 -0.02 3.40 15 22 H 0.08 3.41 7.81 -2.38 -0.02 3.39 15 23 H 0.15 3.90 8.06 -2.91 -0.02 3.87 15 24 H 0.17 3.54 8.06 -2.91 -0.02 3.51 15 25 H 0.14 4.56 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -62.53 241.20 4.23 -58.30 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.20 Total: 5.89 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 1.83 Total: -35.83 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.28 Total: -53.00 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.03 Total: -18.38 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -62.53 4.23 -58.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259327512.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.265 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds