Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46867 * 110.99869 * 2 1 4 4 C 1.53028 * 109.58524 * 174.28844 * 3 2 1 5 5 C 1.53139 * 109.32581 * 59.05976 * 4 3 2 6 6 C 1.53076 * 109.09469 * 302.40193 * 5 4 3 7 7 H 1.08992 * 109.58148 * 297.80754 * 6 5 4 8 8 C 1.52975 * 109.50968 * 177.57350 * 6 5 4 9 9 C 1.53022 * 109.30417 * 179.97438 * 8 6 5 10 10 C 1.52980 * 109.53552 * 59.99235 * 9 8 6 11 11 H 1.09004 * 109.46588 * 180.14125 * 10 9 8 12 12 C 1.50697 * 109.44931 * 60.16861 * 10 9 8 13 13 H 1.08005 * 120.00429 * 239.94037 * 12 10 9 14 14 C 1.37879 * 119.99747 * 59.94040 * 12 10 9 15 15 N 1.31513 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99938 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46891 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46956 * 120.00004 * 16 14 12 19 19 H 1.48495 * 109.47383 * 239.99971 * 16 14 12 20 20 C 1.53033 * 109.53880 * 300.15729 * 10 9 8 21 21 C 1.46806 * 110.99908 * 235.87582 * 2 1 3 22 22 H 1.08996 * 109.44167 * 65.91606 * 21 2 1 23 23 H 1.08992 * 109.47459 * 184.12456 * 1 2 3 24 24 H 1.09004 * 109.47040 * 304.12607 * 1 2 3 25 25 H 1.09000 * 109.47033 * 64.12559 * 1 2 3 26 26 H 1.08994 * 109.45691 * 294.32700 * 3 2 1 27 27 H 1.09002 * 109.45364 * 54.25522 * 3 2 1 28 28 H 1.09002 * 109.49733 * 299.10169 * 4 3 2 29 29 H 1.08999 * 109.51883 * 179.03301 * 4 3 2 30 30 H 1.09008 * 109.53179 * 182.51871 * 5 4 3 31 31 H 1.09000 * 109.53199 * 62.29212 * 5 4 3 32 32 H 1.08995 * 109.48468 * 60.02413 * 8 6 5 33 33 H 1.09000 * 109.58574 * 299.92670 * 8 6 5 34 34 H 1.08998 * 109.46330 * 299.97063 * 9 8 6 35 35 H 1.09001 * 109.46067 * 180.02562 * 9 8 6 36 36 H 0.97002 * 119.99977 * 180.02562 * 15 14 12 37 37 H 1.08993 * 109.48089 * 299.94896 * 20 10 9 38 38 H 1.08996 * 109.49033 * 179.91185 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3711 0.0000 4 6 3.5185 1.3359 0.1435 5 6 4.1186 0.5378 -1.0175 6 6 3.5180 -0.8702 -1.0205 7 1 3.7802 -1.3812 -0.0942 8 6 4.0656 -1.6567 -2.2128 9 6 3.4628 -3.0632 -2.2109 10 6 1.9398 -2.9672 -2.3177 11 1 1.5115 -3.9696 -2.3137 12 6 1.5698 -2.2682 -3.6004 13 1 1.0012 -1.3504 -3.5708 14 6 1.9572 -2.8003 -4.8120 15 7 2.6490 -3.9181 -4.8482 16 14 1.4979 -1.9342 -6.4021 17 1 0.7239 -0.7056 -6.0909 18 1 2.7331 -1.5668 -7.1402 19 1 0.6724 -2.8412 -7.2393 20 6 1.3923 -2.1743 -1.1288 21 6 1.9951 -0.7689 -1.1346 22 1 1.7336 -0.2664 -2.0658 23 1 -0.3634 -1.0249 0.0739 24 1 -0.3633 0.5766 0.8507 25 1 -0.3633 0.4485 -0.9246 26 1 1.7302 1.8618 -0.9365 27 1 1.5649 1.9252 0.8342 28 1 3.7841 0.8603 1.0876 29 1 3.9095 2.3532 0.1261 30 1 5.1997 0.4726 -0.8946 31 1 3.8871 1.0348 -1.9596 32 1 5.1506 -1.7257 -2.1355 33 1 3.7987 -1.1486 -3.1394 34 1 3.7306 -3.5719 -1.2848 35 1 3.8518 -3.6262 -3.0594 36 1 2.9219 -4.2923 -5.7006 37 1 1.6589 -2.6801 -0.2009 38 1 0.3074 -2.1050 -1.2065 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259715955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -21.353011 kcal Electronic energy + Delta-G solvation = -16711.360261 eV Core-core repulsion = 14359.321170 eV Total energy + Delta-G solvation = -2352.039091 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39379 -35.64427 -33.58667 -32.07779 -29.21160 -28.69729 -26.18901 -24.90794 -22.86191 -21.72334 -20.45761 -19.17779 -18.64481 -15.77410 -15.24933 -14.89405 -14.54324 -14.16493 -13.85693 -13.28849 -12.91014 -12.61460 -12.45506 -12.22577 -11.80397 -11.41829 -11.27513 -10.97538 -10.90779 -10.60725 -10.53923 -10.38235 -10.21340 -10.15936 -9.91835 -9.48086 -8.97063 -8.83593 -8.55964 -8.20162 -7.77013 -5.93738 -3.97978 3.29572 3.38335 3.41288 4.40875 4.46293 5.20021 5.27512 5.35546 5.37074 5.55893 5.75626 5.84715 5.89115 5.91124 6.05061 6.16008 6.23942 6.32258 6.33841 6.36495 6.51042 6.55054 6.66159 6.73113 6.82437 6.88757 6.91107 7.05503 7.21549 7.52293 7.56871 7.66941 7.73822 7.79509 7.99650 8.22393 8.52433 9.04269 9.64961 11.11947 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.009844 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.351960 B = 2843.565986 C = 2960.126662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.070 4.070 7 H 0.062 0.938 8 C -0.096 4.096 9 C -0.109 4.109 10 C 0.045 3.955 11 H 0.026 0.974 12 C -0.499 4.499 13 H 0.052 0.948 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.099 4.099 21 C 0.100 3.900 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.014 0.986 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.041 0.959 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 7.800 7.815 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.089 4.089 7 H 0.081 0.919 8 C -0.134 4.134 9 C -0.146 4.146 10 C 0.026 3.974 11 H 0.044 0.956 12 C -0.538 4.538 13 H 0.070 0.930 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.710 3.290 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.137 4.137 21 C -0.007 4.007 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.787 7.459 8.115 11.050 hybrid contribution -0.526 0.906 -1.725 2.019 sum 0.261 8.365 6.390 10.529 Atomic orbital electron populations 1.22338 0.88255 1.02317 0.99360 1.62026 1.06999 1.12524 1.45439 1.22017 0.95559 0.90059 0.99498 1.21561 0.94688 0.99375 0.99558 1.21679 0.99326 0.96696 0.97861 1.21120 0.94153 0.94368 0.99281 0.91907 1.21409 0.96800 0.97778 0.97408 1.21513 0.98818 0.94783 0.99536 1.18691 0.92070 0.95076 0.91558 0.95637 1.21163 1.33520 1.08477 0.90602 0.92998 1.24923 0.95350 0.94938 0.98689 1.69879 1.38301 1.19574 1.25141 0.86699 0.78204 0.79756 0.84330 1.20007 1.21135 1.21144 1.21659 0.98664 0.94228 0.99101 1.21596 0.94206 0.94684 0.90176 0.93213 0.90839 0.92577 0.96069 0.95514 0.91787 0.91577 0.92411 0.92481 0.92473 0.94750 0.91364 0.96720 0.89210 0.93235 0.94046 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.05 60.07 0.54 0.94 16 2 N -0.55 -9.35 4.76 -234.99 -1.12 -10.46 16 3 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 4 C -0.11 -1.60 6.09 -26.64 -0.16 -1.76 16 5 C -0.12 -1.89 5.29 -26.62 -0.14 -2.03 16 6 C -0.07 -1.32 2.14 -90.57 -0.19 -1.52 16 7 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.10 -2.03 5.00 -26.73 -0.13 -2.16 16 9 C -0.11 -2.56 5.23 -26.73 -0.14 -2.70 16 10 C 0.04 1.11 2.58 -91.77 -0.24 0.87 16 11 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 12 C -0.50 -13.30 6.61 -34.44 -0.23 -13.53 16 13 H 0.05 1.40 6.71 -52.48 -0.35 1.04 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.13 11.31 55.43 0.63 -24.51 16 16 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.10 -2.10 4.28 -26.75 -0.11 -2.21 16 21 C 0.10 1.98 1.47 -67.78 -0.10 1.88 16 22 H 0.05 1.11 6.60 -51.93 -0.34 0.77 16 23 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 24 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.59 7.23 -51.93 -0.38 1.21 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.97 6.33 -51.93 -0.33 0.64 16 LS Contribution 278.65 15.07 4.20 4.20 Total: -1.00 -27.31 278.65 -9.00 -36.30 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.66 Total: -1.92 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.02 Total: -19.81 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.49 Total: -34.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.31 -9.00 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259715955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.950 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds