Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86789 * 120.00185 * 2 1 4 4 H 1.48506 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 300.00105 * 3 2 1 6 6 H 1.48504 * 109.47191 * 60.00563 * 3 2 1 7 7 C 1.40139 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.39621 * 120.00164 * 0.28226 * 7 2 1 10 10 N 1.33695 * 126.53761 * 359.40361 * 9 7 2 11 11 N 1.28707 * 109.88848 * 179.85940 * 10 9 7 12 12 C 1.32931 * 109.95947 * 0.42305 * 11 10 9 13 13 C 1.40391 * 133.95406 * 179.74942 * 12 11 10 14 14 Cl 1.73605 * 120.15846 * 0.02562 * 13 12 11 15 15 N 1.31631 * 119.68266 * 179.97438 * 13 12 11 16 16 C 1.33203 * 121.36003 * 359.97438 * 15 13 12 17 17 C 1.35666 * 121.15300 * 359.97438 * 16 15 13 18 18 N 1.36105 * 119.64563 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.99663 * 359.97438 * 1 2 3 20 20 H 1.08003 * 119.42463 * 180.02562 * 16 15 13 21 21 H 1.08005 * 120.18070 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 3.7020 1.3462 0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8833 2.3963 1.2126 7 6 2.0085 -1.2137 0.0005 8 1 3.0886 -1.2137 0.0001 9 6 1.3104 -2.4228 -0.0049 10 7 -0.0179 -2.5750 0.0003 11 7 -0.3152 -3.8272 -0.0103 12 6 0.7957 -4.5573 -0.0137 13 6 1.0549 -5.9371 -0.0197 14 17 -0.2593 -7.0714 -0.0249 15 7 2.2992 -6.3665 -0.0223 16 6 3.3256 -5.5175 -0.0200 17 6 3.1264 -4.1756 -0.0152 18 7 1.8574 -3.6834 -0.0123 19 1 -0.4850 0.8401 0.0004 20 1 4.3340 -5.9042 -0.0227 21 1 3.9702 -3.5014 -0.0129 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961209.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = 81.814865 kcal Electronic energy + Delta-G solvation = -12659.968883 eV Core-core repulsion = 10176.647113 eV Total energy + Delta-G solvation = -2483.321770 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.70947 -39.62061 -37.79255 -35.89677 -35.02927 -31.95523 -31.02160 -27.98533 -25.56949 -24.33740 -23.07970 -19.95872 -18.87843 -18.70085 -17.18267 -17.01390 -16.69959 -15.93565 -15.05741 -14.49935 -14.40582 -13.43457 -13.17658 -13.12819 -13.00505 -12.38184 -12.16853 -12.03793 -11.94227 -11.46281 -11.12745 -10.79546 -10.30400 -9.23919 -8.72958 -6.74137 -0.48964 0.43267 0.58991 1.41467 1.44188 1.60927 1.83530 2.14753 2.20043 2.53928 3.13109 3.31014 3.58525 3.78798 4.18187 4.60338 4.79022 4.86825 5.08502 5.38236 5.73026 5.99929 6.42601 6.52374 6.70787 8.16197 8.26907 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.052619 B = 0.008537 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.001026 B = 3279.230543 C = 3801.382193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.026 3.974 3 Si 1.015 2.985 4 H -0.240 1.240 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.444 4.444 8 H 0.119 0.881 9 C 0.300 3.700 10 N -0.346 5.346 11 N -0.280 5.280 12 C 0.031 3.969 13 C 0.248 3.752 14 Cl 0.004 6.996 15 N -0.464 5.464 16 C -0.009 4.009 17 C 0.062 3.938 18 N -0.439 5.439 19 H 0.294 0.706 20 H 0.225 0.775 21 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 -2.997 -0.038 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.197 4.197 3 Si 0.832 3.168 4 H -0.162 1.162 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.136 0.864 9 C 0.063 3.937 10 N -0.195 5.195 11 N -0.129 5.129 12 C -0.222 4.222 13 C 0.055 3.945 14 Cl 0.032 6.968 15 N -0.181 5.181 16 C -0.147 4.147 17 C -0.064 4.064 18 N -0.128 5.128 19 H 0.104 0.896 20 H 0.241 0.759 21 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.301 -3.362 -0.037 8.038 hybrid contribution 0.770 0.945 -0.005 1.219 sum 8.072 -2.417 -0.042 8.426 Atomic orbital electron populations 1.70092 1.09542 1.31193 1.28753 1.27136 0.95803 1.04995 0.91751 0.84671 0.79393 0.73813 0.78896 1.16249 1.19063 1.19063 1.18925 0.95812 0.86814 1.46790 0.86353 1.22110 0.89361 0.84044 0.98203 1.75791 1.09707 1.05470 1.28513 1.74590 1.22942 0.99522 1.15824 1.21983 0.86911 0.92989 1.20277 1.20629 0.90125 0.83799 0.99924 1.98359 1.43414 1.58988 1.96016 1.67492 0.97167 1.39491 1.13904 1.22583 0.98956 0.86711 1.06417 1.23351 0.86529 0.98112 0.98410 1.43837 1.07093 1.07502 1.54405 0.89566 0.75868 0.78007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.36 11.93 21.87 0.26 -40.10 14 2 C 0.03 1.22 5.50 85.31 0.47 1.69 14 3 Si 1.01 33.61 29.56 68.60 2.03 35.63 14 4 H -0.24 -7.14 7.11 99.48 0.71 -6.43 14 5 H -0.27 -8.62 7.11 99.48 0.71 -7.91 14 6 H -0.27 -8.62 7.11 99.48 0.71 -7.91 14 7 C -0.44 -21.58 9.31 23.07 0.21 -21.36 14 8 H 0.12 4.88 7.85 -2.91 -0.02 4.86 14 9 C 0.30 16.16 7.59 133.32 1.01 17.18 14 10 N -0.35 -20.73 10.50 -55.37 -0.58 -21.31 14 11 N -0.28 -15.87 12.30 -55.23 -0.68 -16.55 14 12 C 0.03 1.52 7.74 133.71 1.04 2.55 14 13 C 0.25 10.44 7.36 85.25 0.63 11.07 14 14 Cl 0.00 0.15 29.15 -2.72 -0.08 0.07 14 15 N -0.46 -16.98 10.42 -186.34 -1.94 -18.92 14 16 C -0.01 -0.27 11.09 83.89 0.93 0.66 14 17 C 0.06 2.12 11.00 83.43 0.92 3.03 14 18 N -0.44 -20.68 3.00 -350.07 -1.05 -21.73 14 19 H 0.29 13.65 8.30 -92.70 -0.77 12.88 14 20 H 0.23 4.18 8.06 -2.91 -0.02 4.16 14 21 H 0.20 5.13 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -67.78 220.03 4.45 -63.33 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.28 Total: 4.75 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.21 Total: 14.83 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.99 Total: -118.61 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.63 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -67.78 4.45 -63.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961209.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.144 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds