Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.44179 * 111.00172 * 2 1 4 4 C 1.52719 * 106.08104 * 224.01582 * 3 2 1 5 5 C 1.46394 * 114.13609 * 270.19069 * 4 3 2 6 6 C 1.56175 * 107.94285 * 59.58364 * 5 4 3 7 7 C 1.52826 * 116.09857 * 77.57770 * 6 5 4 8 8 C 1.52866 * 115.78440 * 145.23465 * 6 5 4 9 9 H 1.09002 * 117.50972 * 0.87750 * 8 6 5 10 10 C 1.52997 * 117.51092 * 145.92170 * 8 6 5 11 11 C 1.50701 * 109.47212 * 184.86424 * 10 8 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.50441 * 114.92829 * 290.80725 * 6 5 4 20 20 C 1.48385 * 110.99736 * 125.23075 * 2 1 3 21 21 H 1.09007 * 109.46375 * 63.95901 * 1 2 3 22 22 H 1.08994 * 109.47179 * 183.95426 * 1 2 3 23 23 H 1.09000 * 109.47545 * 303.96139 * 1 2 3 24 24 H 1.08995 * 110.12843 * 104.86852 * 3 2 1 25 25 H 1.09001 * 110.11943 * 343.15020 * 3 2 1 26 26 H 1.08997 * 108.55162 * 148.99201 * 4 3 2 27 27 H 1.09002 * 108.55046 * 31.39710 * 4 3 2 28 28 H 1.08999 * 109.76557 * 299.97426 * 5 4 3 29 29 H 1.08998 * 109.81250 * 179.22302 * 5 4 3 30 30 H 1.09004 * 117.49271 * 358.59400 * 7 6 5 31 31 H 1.08997 * 117.53980 * 213.54178 * 7 6 5 32 32 H 1.09002 * 109.47153 * 64.86425 * 10 8 6 33 33 H 1.09001 * 109.46832 * 304.86616 * 10 8 6 34 34 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 35 35 H 1.09000 * 108.34523 * 210.04671 * 19 6 5 36 36 H 1.09008 * 108.34679 * 327.09644 * 19 6 5 37 37 H 1.08998 * 108.98282 * 316.17013 * 20 2 1 38 38 H 1.08998 * 108.98021 * 74.96952 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.1225 1.3627 -1.0197 5 6 4.4340 1.0323 -0.4594 6 6 4.3477 -0.4012 0.1543 7 6 4.3971 -1.5618 -0.8387 8 6 5.6126 -1.2517 0.0379 9 1 6.4797 -0.8009 -0.4449 10 6 5.9228 -2.2175 1.1833 11 6 7.2590 -2.8709 0.9414 12 1 7.8302 -2.6220 0.0592 13 6 7.7530 -3.7859 1.8470 14 7 8.9193 -4.3558 1.6361 15 14 6.7655 -4.2159 3.3731 16 1 5.8718 -5.3644 3.0771 17 1 7.6914 -4.5807 4.4753 18 1 5.9482 -3.0448 3.7803 19 6 3.4957 -0.5120 1.3893 20 6 2.0007 -0.7991 1.1316 21 1 -0.3632 0.4512 -0.9234 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3634 0.5741 0.8523 24 1 2.3653 1.6021 0.9891 25 1 1.2056 2.0471 -0.2967 26 1 3.1756 2.3568 -1.4635 27 1 2.8917 0.6464 -1.8081 28 1 4.6946 1.7509 0.3176 29 1 5.1875 1.0514 -1.2468 30 1 4.4646 -1.3150 -1.8983 31 1 3.8190 -2.4544 -0.5999 32 1 5.1480 -2.9825 1.2334 33 1 5.9521 -1.6678 2.1241 34 1 9.2666 -4.9997 2.2730 35 1 3.8965 -1.3118 2.0119 36 1 3.5747 0.4221 1.9456 37 1 1.4336 -0.5608 2.0313 38 1 1.8782 -1.8584 0.9059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = 1.283950 kcal Electronic energy + Delta-G solvation = -15957.192968 eV Core-core repulsion = 13606.135489 eV Total energy + Delta-G solvation = -2351.057479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79378 -37.88856 -35.05926 -34.02563 -31.88228 -30.48165 -27.77089 -25.70586 -24.78215 -24.20395 -21.48905 -20.73952 -19.23239 -18.78880 -16.88357 -16.81819 -16.25438 -15.81821 -15.46295 -14.89177 -14.56451 -14.34657 -14.14184 -13.90809 -13.67265 -13.48734 -13.01189 -12.72050 -12.60484 -12.24900 -12.04513 -11.91586 -11.85612 -11.65361 -11.50147 -11.46317 -11.14027 -10.82203 -10.41608 -10.06340 -9.06278 -8.29008 -6.32037 1.33687 1.35724 1.47742 2.35522 2.97259 3.08601 3.14831 3.76663 3.96826 4.03020 4.11364 4.27446 4.27665 4.38823 4.49399 4.56738 4.62344 4.78657 4.79698 4.83164 4.87993 4.99870 5.06575 5.07962 5.15556 5.22248 5.23885 5.27952 5.36727 5.44595 5.54317 5.60675 5.66743 5.70320 6.22852 6.31511 6.42935 6.75284 7.31412 8.88253 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040406 B = 0.007130 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.797562 B = 3925.972004 C = 4338.140858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.552 5.552 3 C 0.059 3.941 4 C -0.106 4.106 5 C -0.077 4.077 6 C -0.096 4.096 7 C -0.149 4.149 8 C -0.145 4.145 9 H 0.077 0.923 10 C 0.027 3.973 11 C -0.526 4.526 12 H 0.028 0.972 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.246 1.246 19 C -0.087 4.087 20 C 0.070 3.930 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 11.946 -1.252 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.096 4.096 7 C -0.186 4.186 8 C -0.164 4.164 9 H 0.095 0.905 10 C -0.010 4.010 11 C -0.564 4.564 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.169 1.169 19 C -0.124 4.124 20 C -0.058 4.058 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.276 11.620 -1.608 21.717 hybrid contribution 0.260 -0.404 1.178 1.272 sum -18.016 11.216 -0.430 21.226 Atomic orbital electron populations 1.22465 0.86556 1.01999 1.01184 1.61705 1.08113 1.13960 1.43875 1.21709 0.97362 0.89217 0.98648 1.20309 0.93746 1.01358 0.99022 1.20558 0.98112 0.93104 0.99661 1.21469 0.97913 0.92682 0.97521 1.22825 1.00459 0.99096 0.96224 1.22403 0.91434 1.01696 1.00817 0.90487 1.19000 0.94155 0.93596 0.94257 1.21501 1.04074 1.23464 1.07362 0.95354 1.26025 0.95976 0.95572 1.01811 1.70075 1.20645 1.30173 1.38541 0.85669 0.78851 0.79721 0.78512 1.19148 1.20794 1.16916 1.20822 0.93796 1.01982 0.95832 1.22482 0.93371 0.98146 0.91770 0.90526 0.91665 0.95190 0.93549 0.90071 0.91423 0.92007 0.91686 0.92282 0.89172 0.90181 0.96736 0.96315 0.92531 0.92536 0.91509 0.93646 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.24 127.69 1.18 1.62 16 2 N -0.55 -12.20 4.23 -923.22 -3.91 -16.11 16 3 C 0.06 1.18 5.47 86.72 0.47 1.65 16 4 C -0.11 -2.32 5.17 28.46 0.15 -2.17 16 5 C -0.08 -2.03 5.28 29.66 0.16 -1.87 16 6 C -0.10 -3.06 1.57 -52.01 -0.08 -3.14 16 7 C -0.15 -5.26 9.30 30.55 0.28 -4.97 16 8 C -0.15 -6.04 5.31 -10.83 -0.06 -6.10 16 9 H 0.08 3.43 8.01 -2.39 -0.02 3.41 16 10 C 0.03 1.32 2.90 29.85 0.09 1.41 16 11 C -0.53 -31.65 9.63 25.60 0.25 -31.40 16 12 H 0.03 1.88 7.92 -2.91 -0.02 1.86 16 13 C 0.00 0.14 5.47 84.66 0.46 0.61 16 14 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 15 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 19 C -0.09 -2.54 4.75 30.24 0.14 -2.39 16 20 C 0.07 1.71 5.62 86.49 0.49 2.19 16 21 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 23 H 0.03 0.45 8.13 -2.39 -0.02 0.43 16 24 H 0.05 0.96 6.18 -2.39 -0.01 0.94 16 25 H 0.08 1.30 7.61 -2.39 -0.02 1.28 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.52 7.74 -2.39 -0.02 1.50 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 30 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 32 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16 33 H 0.02 0.91 6.73 -2.39 -0.02 0.89 16 34 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.06 1.89 6.02 -2.39 -0.01 1.87 16 36 H 0.07 1.78 6.93 -2.38 -0.02 1.77 16 37 H 0.05 0.98 7.99 -2.39 -0.02 0.96 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.77 289.79 2.75 -64.03 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.94 Total: 10.62 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 3.53 Total: -44.58 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -3.61 Total: -77.29 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -66.77 2.75 -64.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.310 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds