Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48428 * 110.99906 * 2 1 4 4 C 1.54327 * 104.57657 * 159.28842 * 3 2 1 5 5 H 1.09000 * 110.29940 * 216.28372 * 4 3 2 6 6 C 1.50701 * 110.29758 * 94.23601 * 4 3 2 7 7 H 1.08000 * 120.00009 * 305.11646 * 6 4 3 8 8 C 1.37877 * 119.99961 * 125.11143 * 6 4 3 9 9 N 1.31514 * 120.00029 * 359.97438 * 8 6 4 10 10 Si 1.86796 * 119.99859 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47608 * 59.99772 * 10 8 6 12 12 H 1.48499 * 109.46934 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46985 * 299.99564 * 10 8 6 14 14 C 1.53998 * 105.19477 * 335.21256 * 4 3 2 15 15 H 1.09001 * 110.60430 * 241.19803 * 14 4 3 16 16 C 1.51283 * 110.30494 * 118.56717 * 14 4 3 17 17 C 1.50932 * 112.02924 * 157.11403 * 16 14 4 18 18 C 1.49748 * 114.89412 * 89.96021 * 17 16 14 19 19 C 1.56198 * 106.12415 * 297.96679 * 18 17 16 20 20 C 1.53676 * 105.74703 * 73.53493 * 19 18 17 21 21 C 1.48421 * 110.99904 * 115.95150 * 2 1 3 22 22 H 1.09001 * 110.00750 * 319.95629 * 21 2 1 23 23 H 1.09003 * 109.47064 * 59.87510 * 1 2 3 24 24 H 1.09002 * 109.47433 * 299.87044 * 1 2 3 25 25 H 1.08996 * 109.47382 * 179.87350 * 1 2 3 26 26 H 1.08996 * 110.42059 * 278.06255 * 3 2 1 27 27 H 1.09005 * 110.41784 * 40.51980 * 3 2 1 28 28 H 0.96998 * 120.00401 * 180.02562 * 9 8 6 29 29 H 1.09000 * 108.97103 * 277.77590 * 16 14 4 30 30 H 1.09003 * 108.96274 * 36.45880 * 16 14 4 31 31 H 1.08998 * 108.39763 * 211.36200 * 17 16 14 32 32 H 1.08999 * 108.39657 * 328.72967 * 17 16 14 33 33 H 1.09001 * 110.11434 * 57.11516 * 18 17 16 34 34 H 1.08999 * 110.11667 * 178.81826 * 18 17 16 35 35 H 1.09000 * 110.18661 * 192.59091 * 19 18 17 36 36 H 1.08999 * 110.19095 * 314.34716 * 19 18 17 37 37 H 1.09006 * 109.11880 * 15.64162 * 20 19 18 38 38 H 1.08992 * 109.12236 * 134.77595 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0009 1.3857 0.0000 4 6 3.4443 1.2477 0.5282 5 1 3.7030 2.1046 1.1502 6 6 4.4120 1.1254 -0.6206 7 1 4.2716 0.3559 -1.3652 8 6 5.4763 1.9960 -0.7211 9 7 5.6469 2.9335 0.1854 10 14 6.6753 1.8449 -2.1455 11 1 5.9462 2.0204 -3.4271 12 1 7.7225 2.8907 -2.0240 13 1 7.3109 0.5031 -2.1172 14 6 3.4447 -0.0424 1.3693 15 1 3.7008 0.1758 2.4061 16 6 4.4095 -1.0501 0.7843 17 6 4.8658 -2.0587 1.8103 18 6 4.0136 -3.2861 1.9100 19 6 2.5974 -2.7962 2.3509 20 6 1.9854 -2.1218 1.1131 21 6 2.0008 -0.6064 1.2459 22 1 1.4024 -0.2892 2.1000 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 0.5118 0.8911 25 1 -0.3634 -1.0276 -0.0023 26 1 2.0034 1.7921 -1.0114 27 1 1.4121 2.0190 0.6637 28 1 6.3954 3.5463 0.1146 29 1 3.9195 -1.5754 -0.0355 30 1 5.2801 -0.5223 0.3948 31 1 5.8823 -2.3649 1.5634 32 1 4.8816 -1.5736 2.7862 33 1 3.9541 -3.7809 0.9406 34 1 4.4234 -3.9674 2.6556 35 1 1.9852 -3.6439 2.6587 36 1 2.6846 -2.0797 3.1676 37 1 2.5575 -2.4086 0.2306 38 1 0.9555 -2.4586 0.9955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = -22.724649 kcal Electronic energy + Delta-G solvation = -16663.392612 eV Core-core repulsion = 14311.294042 eV Total energy + Delta-G solvation = -2352.098570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98849 -37.21697 -35.37492 -33.11742 -31.64759 -30.19466 -27.51879 -25.65245 -25.06031 -23.48763 -21.74365 -21.09737 -19.47757 -18.12472 -16.87067 -16.71701 -16.04880 -15.78469 -15.31952 -14.76514 -14.38282 -13.93867 -13.82687 -13.41121 -13.28765 -13.23239 -12.95879 -12.76788 -12.55319 -12.41044 -12.34929 -11.74687 -11.61970 -11.50727 -11.23693 -10.93522 -10.76130 -10.62322 -10.55471 -10.43321 -9.22317 -8.06686 -6.07053 1.42829 1.43289 1.50949 2.46625 3.22165 3.26057 3.89264 3.97554 4.11485 4.29309 4.38935 4.46473 4.49836 4.53181 4.60218 4.66247 4.72921 4.84799 4.91824 4.96053 5.04134 5.08688 5.12860 5.25460 5.35098 5.39885 5.47588 5.51187 5.63665 5.67827 5.74389 5.79653 5.88437 6.01924 6.18958 6.41514 6.55463 7.02712 7.52121 9.03048 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.011173 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.154804 B = 2505.361066 C = 3171.635827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.521 5.521 3 C 0.050 3.950 4 C 0.020 3.980 5 H 0.029 0.971 6 C -0.476 4.476 7 H 0.051 0.949 8 C 0.007 3.993 9 N -0.936 5.936 10 Si 0.945 3.055 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.270 1.270 14 C -0.073 4.073 15 H 0.041 0.959 16 C -0.090 4.090 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.100 4.100 21 C 0.075 3.925 22 H 0.034 0.966 23 H 0.066 0.934 24 H 0.022 0.978 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.017 0.983 28 H 0.258 0.742 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -10.591 3.198 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.079 4.079 4 C 0.001 3.999 5 H 0.048 0.952 6 C -0.515 4.515 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.577 5.577 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.215 1.215 13 H -0.195 1.195 14 C -0.093 4.093 15 H 0.060 0.940 16 C -0.127 4.127 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.033 4.033 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.467 -10.731 2.745 12.826 hybrid contribution 0.511 1.235 -0.011 1.337 sum -5.956 -9.495 2.734 11.537 Atomic orbital electron populations 1.22537 0.87887 1.02376 1.00403 1.65081 1.08063 1.15361 1.35983 1.23133 0.96793 0.88818 0.99126 1.19694 0.91357 0.94005 0.94873 0.95231 1.21045 1.08560 1.13394 1.08483 0.93087 1.25673 0.99718 0.95335 0.98205 1.70017 1.31466 1.19658 1.36561 0.85802 0.78917 0.77738 0.80406 1.19843 1.21482 1.19521 1.21794 0.93966 0.96454 0.97045 0.94043 1.20820 0.99102 0.95224 0.97597 1.20730 0.99255 0.96616 0.99004 1.21678 0.95357 0.96187 1.01475 1.22303 0.96308 0.99754 0.96659 1.21585 1.00757 0.92270 0.99170 1.22761 0.94861 0.95759 0.89940 0.94794 0.91507 0.95914 0.90133 0.92603 0.96514 0.93279 0.92577 0.93245 0.93599 0.93614 0.91594 0.90527 0.90079 0.92438 0.91514 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.38 127.69 1.20 1.69 16 2 N -0.52 -19.93 5.26 -882.90 -4.65 -24.58 16 3 C 0.05 2.21 6.02 86.46 0.52 2.73 16 4 C 0.02 1.02 3.31 -10.75 -0.04 0.98 16 5 H 0.03 1.70 6.98 -2.39 -0.02 1.69 16 6 C -0.48 -25.99 5.48 25.60 0.14 -25.85 16 7 H 0.05 2.82 7.54 -2.91 -0.02 2.79 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.94 -55.73 12.63 21.45 0.27 -55.46 16 10 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C -0.07 -3.14 2.97 -10.16 -0.03 -3.17 16 15 H 0.04 1.81 7.62 -2.39 -0.02 1.79 16 16 C -0.09 -3.71 3.72 29.36 0.11 -3.60 16 17 C -0.12 -3.89 5.12 28.88 0.15 -3.74 16 18 C -0.11 -2.81 5.93 30.66 0.18 -2.63 16 19 C -0.11 -2.81 5.93 31.93 0.19 -2.62 16 20 C -0.10 -2.95 4.79 30.54 0.15 -2.81 16 21 C 0.07 2.70 2.09 45.20 0.09 2.79 16 22 H 0.03 1.20 7.88 -2.39 -0.02 1.18 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.02 0.65 7.97 -2.39 -0.02 0.63 16 25 H 0.08 2.06 7.38 -2.39 -0.02 2.04 16 26 H 0.06 2.64 7.86 -2.39 -0.02 2.62 16 27 H 0.02 0.72 7.97 -2.38 -0.02 0.70 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.06 2.31 5.61 -2.39 -0.01 2.30 16 30 H 0.05 2.42 6.08 -2.39 -0.01 2.40 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.52 7.38 -2.39 -0.02 1.50 16 33 H 0.07 1.65 7.63 -2.39 -0.02 1.64 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.53 7.49 -2.39 -0.02 1.51 16 37 H 0.07 2.17 5.09 -2.38 -0.01 2.16 16 38 H 0.06 1.62 7.38 -2.39 -0.02 1.60 16 Total: -1.00 -59.81 277.72 1.79 -58.03 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.01 Total: 10.82 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.12 Total: -35.34 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -4.38 Total: -80.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -59.81 1.79 -58.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.304 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds