Wall clock time and date at job start Mon Mar 30 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46745 * 240.00172 * 3 2 1 5 5 H 1.48494 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47084 * 120.00236 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00137 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.82961 * 59.30152 * 9 7 2 11 11 C 1.54707 * 110.93953 * 295.58940 * 9 7 2 12 12 O 1.43824 * 102.75565 * 267.06372 * 11 9 7 13 13 C 1.36143 * 109.26142 * 332.30654 * 12 11 9 14 14 C 1.39298 * 129.87741 * 198.36525 * 13 12 11 15 15 C 1.37938 * 120.26387 * 180.99081 * 14 13 12 16 16 C 1.38255 * 120.36766 * 0.02562 * 15 14 13 17 17 C 1.38471 * 119.75308 * 359.85481 * 16 15 14 18 18 Cl 1.73600 * 120.02760 * 179.97438 * 17 16 15 19 19 C 1.37857 * 119.95247 * 359.94999 * 17 16 15 20 20 H 0.97003 * 120.00551 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.75114 * 25.41608 * 11 9 7 22 22 H 1.09000 * 110.74941 * 148.76467 * 11 9 7 23 23 H 1.08002 * 119.86289 * 0.97484 * 14 13 12 24 24 H 1.08004 * 119.81309 * 180.02562 * 15 14 13 25 25 H 1.08000 * 120.12556 * 179.83540 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6064 -2.5746 -0.8763 11 6 0.4346 -2.6662 1.3029 12 8 1.3375 -3.3960 2.1518 13 6 2.1741 -4.1433 1.3804 14 6 2.9616 -5.2406 1.7212 15 6 3.7615 -5.8437 0.7729 16 6 3.7900 -5.3653 -0.5239 17 6 3.0085 -4.2765 -0.8721 18 17 3.0393 -3.6695 -2.4982 19 6 2.2055 -3.6751 0.0735 20 1 -0.4851 0.8400 -0.0004 21 1 0.1959 -1.6950 1.7363 22 1 -0.4727 -3.2417 1.1192 23 1 2.9460 -5.6205 2.7321 24 1 4.3688 -6.6943 1.0450 25 1 4.4197 -5.8387 -1.2626 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211850.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:32 Heat of formation + Delta-G solvation = -20.025560 kcal Electronic energy + Delta-G solvation = -13079.899273 eV Core-core repulsion = 10663.408964 eV Total energy + Delta-G solvation = -2416.490310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.23819 -36.95044 -35.60749 -33.46775 -31.11533 -29.39443 -28.24133 -25.00642 -22.48785 -21.60146 -20.43896 -17.09482 -16.14844 -15.85890 -15.32743 -14.80543 -14.42559 -13.97876 -13.00180 -12.74400 -12.54080 -12.09092 -11.63340 -11.19782 -11.04169 -10.89737 -10.60718 -10.46414 -10.22051 -10.20308 -9.70986 -9.42454 -8.56633 -8.07722 -7.45660 -6.18138 -4.23223 1.72991 1.87148 2.80003 3.27728 3.31274 3.35461 4.09511 4.23018 4.37419 5.12785 5.33020 5.44671 5.62063 5.83647 5.89470 6.17714 6.28737 6.53878 6.74380 6.77121 6.85777 7.08416 7.17330 7.42417 7.76657 7.92643 8.13095 8.77842 9.41515 10.89701 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.011546 C = 0.009401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.688712 B = 2424.441998 C = 2977.654985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.065 3.935 10 H 0.058 0.942 11 C 0.058 3.942 12 O -0.309 6.309 13 C 0.121 3.879 14 C -0.153 4.153 15 C -0.093 4.093 16 C -0.157 4.157 17 C 0.010 3.990 18 Cl -0.074 7.074 19 C -0.130 4.130 20 H 0.266 0.734 21 H 0.119 0.881 22 H 0.046 0.954 23 H 0.123 0.877 24 H 0.129 0.871 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -8.394 -0.014 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.046 3.954 10 H 0.076 0.924 11 C -0.017 4.017 12 O -0.223 6.223 13 C 0.074 3.926 14 C -0.172 4.172 15 C -0.112 4.112 16 C -0.176 4.176 17 C -0.016 4.016 18 Cl -0.045 7.045 19 C -0.132 4.132 20 H 0.076 0.924 21 H 0.136 0.864 22 H 0.065 0.935 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.955 -8.164 0.078 9.072 hybrid contribution 0.369 1.063 -0.302 1.165 sum 4.324 -7.101 -0.224 8.317 Atomic orbital electron populations 1.69886 1.05918 1.27416 1.49915 1.24956 0.94972 0.99312 0.94604 0.86520 0.79581 0.82334 0.78923 1.19987 1.21097 1.20045 1.20799 0.93069 0.88630 1.51153 0.92092 1.19039 0.91291 0.90205 0.94834 0.92434 1.24158 0.89663 0.95478 0.92370 1.86769 1.45353 1.56418 1.33778 1.19606 0.92296 0.90995 0.89663 1.20201 1.00681 0.95807 1.00542 1.20545 0.98767 0.99732 0.92115 1.20773 1.01902 0.97753 0.97184 1.20086 0.99310 0.96333 0.85894 1.98335 1.97682 1.87751 1.20756 1.21331 1.00571 0.98215 0.93041 0.92424 0.86350 0.93546 0.85912 0.85348 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 12.11 55.43 0.67 -23.81 15 2 C 0.06 1.71 5.14 -17.82 -0.09 1.62 15 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.50 -13.50 8.59 -34.44 -0.30 -13.79 15 8 H 0.06 1.69 7.78 -52.48 -0.41 1.28 15 9 C 0.06 1.61 2.82 -91.56 -0.26 1.36 15 10 H 0.06 1.52 8.14 -51.93 -0.42 1.10 15 11 C 0.06 1.36 7.18 38.06 0.27 1.64 15 12 O -0.31 -7.11 11.10 -20.20 -0.22 -7.33 15 13 C 0.12 2.58 7.04 -38.96 -0.27 2.31 15 14 C -0.15 -2.66 10.06 -39.30 -0.40 -3.05 15 15 C -0.09 -1.41 10.01 -39.68 -0.40 -1.81 15 16 C -0.16 -2.59 9.85 -39.49 -0.39 -2.98 15 17 C 0.01 0.21 6.31 -39.64 -0.25 -0.04 15 18 Cl -0.07 -1.42 28.81 -51.86 -1.49 -2.92 15 19 C -0.13 -2.91 5.44 -104.07 -0.57 -3.48 15 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 21 H 0.12 2.99 6.76 -51.93 -0.35 2.64 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 24 H 0.13 1.45 8.06 -52.48 -0.42 1.03 15 25 H 0.13 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 238.63 15.07 3.60 3.60 Total: -1.00 -27.78 238.63 -7.12 -34.90 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -2.01 Total: -2.27 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.64 Total: -18.24 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.67 Total: -23.81 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.22 Total: -7.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.49 Total: -2.92 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.78 -7.12 -34.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211850.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.875 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds