Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47127 * 299.99870 * 3 2 1 6 6 H 1.48502 * 109.47488 * 60.00193 * 3 2 1 7 7 C 1.37883 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00088 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.85429 * 303.73207 * 9 7 2 11 11 C 1.54713 * 110.93764 * 67.44959 * 9 7 2 12 12 O 1.43773 * 102.77445 * 92.91378 * 11 9 7 13 13 C 1.36140 * 109.22730 * 27.79344 * 12 11 9 14 14 C 1.39292 * 129.87572 * 161.39586 * 13 12 11 15 15 C 1.37945 * 120.26377 * 179.01026 * 14 13 12 16 16 C 1.38264 * 120.36376 * 0.02562 * 15 14 13 17 17 C 1.38472 * 119.75022 * 0.22485 * 16 15 14 18 18 Cl 1.73602 * 120.01855 * 179.91044 * 17 16 15 19 19 C 1.37855 * 119.95498 * 359.93040 * 17 16 15 20 20 H 0.97001 * 120.00052 * 359.97438 * 1 2 3 21 21 H 1.08999 * 110.75323 * 211.23972 * 11 9 7 22 22 H 1.09000 * 110.74577 * 334.59504 * 11 9 7 23 23 H 1.08002 * 119.87218 * 359.28635 * 14 13 12 24 24 H 1.07998 * 119.81766 * 180.02562 * 15 14 13 25 25 H 1.07999 * 120.12432 * 180.20189 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5675 -2.5526 0.8469 11 6 0.4942 -2.7006 -1.3348 12 8 1.4337 -3.4511 -2.1230 13 6 2.2327 -4.1790 -1.2954 14 6 3.0301 -5.2873 -1.5711 15 6 3.7853 -5.8662 -0.5723 16 6 3.7579 -5.3529 0.7112 17 6 2.9640 -4.2545 0.9952 18 17 2.9225 -3.6058 2.6049 19 6 2.2063 -3.6769 -0.0011 20 1 -0.4850 0.8400 0.0004 21 1 -0.4209 -3.2715 -1.1774 22 1 0.2762 -1.7411 -1.8037 23 1 3.0608 -5.6924 -2.5718 24 1 4.4013 -6.7251 -0.7942 25 1 4.3532 -5.8072 1.4894 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211851.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = -36.271217 kcal Electronic energy + Delta-G solvation = -13075.778346 eV Core-core repulsion = 10658.583572 eV Total energy + Delta-G solvation = -2417.194774 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.86180 -38.46155 -37.08702 -35.41856 -32.87978 -30.85431 -29.92011 -27.01511 -24.08650 -23.10513 -22.14289 -18.91727 -17.86828 -17.52855 -17.00507 -16.39180 -16.27823 -15.45644 -14.50596 -14.44795 -14.28416 -13.72872 -13.30553 -13.00236 -12.71513 -12.58568 -12.31982 -12.26841 -11.93759 -11.75402 -11.45969 -11.26676 -10.62563 -9.55975 -9.04119 -8.22767 -6.35073 0.28712 0.43326 1.31907 1.36914 1.39301 1.50852 2.36764 2.53460 2.77468 3.06416 3.90372 4.07779 4.18359 4.31505 4.43806 4.60198 4.62880 4.87156 5.16920 5.23735 5.40728 5.42807 5.55346 5.66070 5.71982 6.08851 6.32352 6.68952 7.32362 8.84134 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.011546 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.957266 B = 2424.535474 C = 2977.926161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.046 0.954 9 C 0.062 3.938 10 H 0.029 0.971 11 C 0.067 3.933 12 O -0.322 6.322 13 C 0.087 3.913 14 C -0.143 4.143 15 C -0.072 4.072 16 C -0.145 4.145 17 C -0.007 4.007 18 Cl -0.079 7.079 19 C -0.165 4.165 20 H 0.268 0.732 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.153 0.847 24 H 0.184 0.816 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -10.132 -0.040 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.044 3.956 10 H 0.047 0.953 11 C -0.008 4.008 12 O -0.236 6.236 13 C 0.041 3.959 14 C -0.162 4.162 15 C -0.090 4.090 16 C -0.164 4.164 17 C -0.034 4.034 18 Cl -0.051 7.051 19 C -0.166 4.166 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.110 0.890 23 H 0.171 0.829 24 H 0.201 0.799 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.862 -9.920 -0.135 11.523 hybrid contribution -0.182 1.470 0.411 1.537 sum 5.681 -8.450 0.276 10.186 Atomic orbital electron populations 1.70005 1.06960 1.27984 1.50510 1.25664 0.95756 1.02202 0.94297 0.85531 0.78904 0.79477 0.78007 1.19650 1.20023 1.20166 1.20990 0.92440 0.90169 1.51199 0.93609 1.18835 0.91972 0.91008 0.93822 0.95259 1.23844 0.89650 0.94269 0.93029 1.86692 1.46027 1.57394 1.33520 1.20021 0.94291 0.92949 0.88627 1.20716 0.99156 0.93798 1.02491 1.21194 0.97521 1.00009 0.90263 1.21277 1.00251 0.95601 0.99248 1.20430 1.00280 0.97312 0.85388 1.98326 1.97704 1.86612 1.22419 1.21215 1.02494 0.98494 0.94431 0.92315 0.92380 0.88983 0.82902 0.79902 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.72 12.38 21.45 0.27 -51.46 15 2 C 0.02 1.13 5.16 84.66 0.44 1.56 15 3 Si 0.96 43.85 29.54 68.60 2.03 45.87 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.51 -28.52 8.55 25.60 0.22 -28.30 15 8 H 0.05 2.64 7.78 -2.91 -0.02 2.61 15 9 C 0.06 3.22 2.76 -11.40 -0.03 3.19 15 10 H 0.03 1.65 8.14 -2.39 -0.02 1.63 15 11 C 0.07 3.27 7.22 72.57 0.52 3.80 15 12 O -0.32 -14.91 11.10 -95.14 -1.06 -15.97 15 13 C 0.09 3.63 7.03 22.67 0.16 3.79 15 14 C -0.14 -4.42 10.06 22.45 0.23 -4.19 15 15 C -0.07 -1.80 10.01 22.21 0.22 -1.57 15 16 C -0.15 -4.21 9.85 22.33 0.22 -3.99 15 17 C -0.01 -0.29 6.31 22.23 0.14 -0.15 15 18 Cl -0.08 -3.04 28.81 -2.72 -0.08 -3.11 15 19 C -0.16 -7.42 5.45 -19.51 -0.11 -7.53 15 20 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 21 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 22 H 0.09 4.85 7.02 -2.39 -0.02 4.84 15 23 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 24 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 25 H 0.16 3.56 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -62.15 239.12 4.37 -57.78 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.20 Total: 0.28 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 2.01 Total: -33.39 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.27 Total: -51.46 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -1.06 Total: -15.97 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.08 Total: -3.11 kcal Total: -62.15 4.37 -57.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211851.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.508 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds