Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35027 * 1 3 3 C 1.40065 * 120.00189 * 2 1 4 4 H 1.08003 * 120.00199 * 155.02111 * 3 2 1 5 5 C 1.40316 * 120.00274 * 335.02640 * 3 2 1 6 6 N 1.30687 * 119.99889 * 342.75354 * 5 3 2 7 7 Si 1.86800 * 120.00060 * 162.74979 * 5 3 2 8 8 H 1.48497 * 109.47006 * 90.00088 * 7 5 3 9 9 H 1.48500 * 109.47078 * 210.00203 * 7 5 3 10 10 H 1.48503 * 109.47212 * 330.00591 * 7 5 3 11 11 C 1.50704 * 119.99599 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47340 * 95.00015 * 11 2 1 13 13 C 1.53119 * 109.52231 * 174.99780 * 12 11 2 14 14 C 1.53038 * 109.27824 * 177.61913 * 13 12 11 15 15 N 1.46849 * 109.52388 * 300.82180 * 14 13 12 16 16 C 1.46906 * 110.99799 * 185.83832 * 15 14 13 17 17 C 1.53000 * 109.46509 * 169.99885 * 16 15 14 18 18 C 1.46843 * 111.19955 * 61.74041 * 15 14 13 19 19 C 1.53033 * 109.52469 * 298.25981 * 18 15 14 20 20 H 1.08000 * 120.00122 * 354.30758 * 1 2 3 21 21 H 1.08001 * 120.00641 * 174.30864 * 1 2 3 22 22 H 0.96998 * 120.00202 * 179.97438 * 6 5 3 23 23 H 1.08993 * 109.47287 * 334.99254 * 11 2 1 24 24 H 1.09001 * 109.46787 * 214.99558 * 11 2 1 25 25 H 1.08999 * 109.52566 * 54.86810 * 12 11 2 26 26 H 1.08998 * 109.50610 * 57.67832 * 13 12 11 27 27 H 1.08997 * 109.53674 * 297.57853 * 13 12 11 28 28 H 1.08999 * 109.46522 * 180.80347 * 14 13 12 29 29 H 1.08999 * 109.45127 * 60.82914 * 14 13 12 30 30 H 1.08998 * 109.46902 * 289.99531 * 16 15 14 31 31 H 1.08998 * 109.47257 * 50.00066 * 16 15 14 32 32 H 1.09003 * 109.46620 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47250 * 299.99434 * 17 16 15 34 34 H 1.08998 * 109.47213 * 60.00154 * 17 16 15 35 35 H 1.09004 * 109.46200 * 58.27491 * 18 15 14 36 36 H 1.09002 * 109.46493 * 178.24137 * 18 15 14 37 37 H 1.09007 * 109.50261 * 299.23737 * 19 18 15 38 38 H 1.09002 * 109.50979 * 179.11812 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2130 0.0000 4 1 3.0549 1.2567 0.3950 5 6 1.4475 2.3714 -0.5130 6 7 0.3970 2.2743 -1.2843 7 14 2.1462 4.0523 -0.0935 8 1 3.1629 4.4326 -1.1067 9 1 1.0519 5.0561 -0.0892 10 1 2.7792 4.0042 1.2490 11 6 2.1037 -1.3052 -0.0006 12 6 2.4676 -1.6834 -1.4377 13 6 3.3393 -2.9422 -1.4304 14 6 3.6506 -3.3496 -2.8724 15 7 2.3962 -3.6053 -3.5918 16 6 2.6592 -4.1319 -4.9377 17 6 1.3487 -4.6177 -5.5602 18 6 1.5633 -2.3974 -3.6528 19 6 1.1897 -1.9616 -2.2342 20 1 -0.5400 0.9307 0.0928 21 1 -0.5401 -0.9306 -0.0927 22 1 -0.0201 3.0751 -1.6387 23 1 1.4788 -2.0856 0.4335 24 1 3.0144 -1.1992 0.5889 25 1 3.0153 -0.8637 -1.9026 26 1 2.8063 -3.7511 -0.9308 27 1 4.2699 -2.7381 -0.9010 28 1 4.2593 -4.2538 -2.8710 29 1 4.1955 -2.5457 -3.3671 30 1 3.0865 -3.3447 -5.5588 31 1 3.3604 -4.9638 -4.8718 32 1 1.5439 -5.0089 -6.5587 33 1 0.9213 -5.4050 -4.9392 34 1 0.6474 -3.7859 -5.6262 35 1 2.1182 -1.5981 -4.1440 36 1 0.6560 -2.6100 -4.2182 37 1 0.6228 -2.7551 -1.7471 38 1 0.5845 -1.0561 -2.2790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260222552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = -5.211177 kcal Electronic energy + Delta-G solvation = -15824.091218 eV Core-core repulsion = 13472.752090 eV Total energy + Delta-G solvation = -2351.339129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85452 -35.69089 -33.72045 -31.42054 -30.25578 -29.32043 -25.92620 -24.87661 -23.01472 -22.17038 -20.79990 -19.00890 -18.71941 -15.81062 -15.49498 -14.95777 -14.81789 -14.19160 -13.78331 -13.41787 -13.36464 -12.83127 -12.68187 -12.02067 -11.84874 -11.63374 -11.55716 -11.31623 -11.02616 -10.83452 -10.72981 -10.61481 -10.26006 -10.14437 -9.87939 -9.50836 -9.33349 -9.03328 -8.76733 -8.04895 -7.09659 -6.34442 -3.97394 3.13051 3.24168 3.29555 4.15372 4.18241 4.27191 5.05392 5.24233 5.28672 5.36279 5.51671 5.54670 5.59404 5.77902 5.82348 5.89543 5.93805 6.04354 6.07547 6.21090 6.28874 6.38571 6.44111 6.57481 6.74632 6.87296 6.98891 7.12023 7.21158 7.27686 7.41865 7.46687 7.48115 7.76062 8.31316 8.59201 9.10751 9.38518 9.59873 10.64749 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.006647 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.472573 B = 4211.639134 C = 4345.184066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 C 0.032 3.968 3 C -0.474 4.474 4 H 0.058 0.942 5 C 0.077 3.923 6 N -0.803 5.803 7 Si 0.889 3.111 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.266 1.266 11 C -0.071 4.071 12 C -0.071 4.071 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.539 5.539 16 C 0.050 3.950 17 C -0.149 4.149 18 C 0.055 3.945 19 C -0.106 4.106 20 H 0.085 0.915 21 H 0.039 0.961 22 H 0.268 0.732 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -9.282 -6.092 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.386 4.386 2 C 0.031 3.969 3 C -0.506 4.506 4 H 0.076 0.924 5 C -0.137 4.137 6 N -0.431 5.431 7 Si 0.715 3.285 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.190 1.190 11 C -0.109 4.109 12 C -0.090 4.090 13 C -0.150 4.150 14 C -0.069 4.069 15 N -0.265 5.265 16 C -0.078 4.078 17 C -0.206 4.206 18 C -0.072 4.072 19 C -0.144 4.144 20 H 0.103 0.897 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.874 -9.508 -5.975 11.879 hybrid contribution 0.772 1.556 -0.425 1.788 sum 4.647 -7.952 -6.400 11.215 Atomic orbital electron populations 1.23275 0.94583 0.97260 1.23456 1.18337 0.93210 0.90842 0.94503 1.19073 1.00620 0.93257 1.37644 0.92416 1.25694 0.94602 1.00147 0.93236 1.69832 1.19181 1.29776 1.24276 0.86656 0.79131 0.82949 0.79799 1.20195 1.20627 1.19011 1.20644 0.98693 0.97217 0.94336 1.20998 0.95548 0.95523 0.96928 1.21700 0.99804 0.98755 0.94744 1.22056 0.90416 0.99103 0.95317 1.62017 1.17166 1.31431 1.15868 1.22031 0.97674 0.98664 0.89438 1.21801 0.97514 1.01683 0.99614 1.22195 0.96612 0.89494 0.98890 1.21648 0.98084 1.01843 0.92817 0.89677 0.94234 0.92091 0.93973 0.93660 0.91525 0.91711 0.92146 0.91654 0.95308 0.95411 0.91356 0.92762 0.91964 0.92476 0.95298 0.91199 0.92419 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.49 11.65 29.59 0.34 -9.15 16 2 C 0.03 0.86 4.41 -105.08 -0.46 0.40 16 3 C -0.47 -13.19 9.04 -38.12 -0.34 -13.54 16 4 H 0.06 1.57 7.91 -52.48 -0.42 1.15 16 5 C 0.08 2.10 5.09 -17.26 -0.09 2.02 16 6 N -0.80 -22.45 11.03 55.57 0.61 -21.84 16 7 Si 0.89 20.26 29.60 -169.99 -5.03 15.23 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 C -0.07 -1.59 4.83 -27.88 -0.13 -1.72 16 12 C -0.07 -1.42 2.24 -90.50 -0.20 -1.62 16 13 C -0.11 -1.83 5.38 -26.65 -0.14 -1.97 16 14 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 15 N -0.54 -8.21 4.66 -234.67 -1.09 -9.30 16 16 C 0.05 0.63 5.68 -3.82 -0.02 0.61 16 17 C -0.15 -1.66 9.84 37.16 0.37 -1.30 16 18 C 0.06 0.94 5.29 -3.84 -0.02 0.92 16 19 C -0.11 -2.09 4.96 -26.65 -0.13 -2.22 16 20 H 0.08 2.54 6.25 -52.49 -0.33 2.21 16 21 H 0.04 1.03 8.06 -52.49 -0.42 0.61 16 22 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 23 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 24 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.84 8.02 -51.93 -0.42 0.43 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.77 7.99 -51.93 -0.41 0.35 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.11 6.21 -51.93 -0.32 0.78 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 2.06 6.70 -51.93 -0.35 1.71 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -28.29 295.74 -8.69 -36.98 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.78 Total: 1.20 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -0.86 Total: -26.73 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: -0.48 Total: -31.14 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.29 -8.69 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.769 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds