Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35027 * 1 3 3 C 1.40065 * 120.00189 * 2 1 4 4 H 1.08003 * 120.00199 * 155.02111 * 3 2 1 5 5 C 1.40316 * 120.00274 * 335.02640 * 3 2 1 6 6 N 1.30687 * 119.99889 * 342.75354 * 5 3 2 7 7 Si 1.86800 * 120.00060 * 162.74979 * 5 3 2 8 8 H 1.48497 * 109.47006 * 90.00088 * 7 5 3 9 9 H 1.48500 * 109.47078 * 210.00203 * 7 5 3 10 10 H 1.48503 * 109.47212 * 330.00591 * 7 5 3 11 11 C 1.50704 * 119.99599 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47340 * 95.00015 * 11 2 1 13 13 C 1.53119 * 109.52231 * 174.99780 * 12 11 2 14 14 C 1.53038 * 109.27824 * 177.61913 * 13 12 11 15 15 N 1.46849 * 109.52388 * 300.82180 * 14 13 12 16 16 C 1.46906 * 110.99799 * 185.83832 * 15 14 13 17 17 C 1.53000 * 109.46509 * 169.99885 * 16 15 14 18 18 C 1.46843 * 111.19955 * 61.74041 * 15 14 13 19 19 C 1.53033 * 109.52469 * 298.25981 * 18 15 14 20 20 H 1.08000 * 120.00122 * 354.30758 * 1 2 3 21 21 H 1.08001 * 120.00641 * 174.30864 * 1 2 3 22 22 H 0.96998 * 120.00202 * 179.97438 * 6 5 3 23 23 H 1.08993 * 109.47287 * 334.99254 * 11 2 1 24 24 H 1.09001 * 109.46787 * 214.99558 * 11 2 1 25 25 H 1.08999 * 109.52566 * 54.86810 * 12 11 2 26 26 H 1.08998 * 109.50610 * 57.67832 * 13 12 11 27 27 H 1.08997 * 109.53674 * 297.57853 * 13 12 11 28 28 H 1.08999 * 109.46522 * 180.80347 * 14 13 12 29 29 H 1.08999 * 109.45127 * 60.82914 * 14 13 12 30 30 H 1.08998 * 109.46902 * 289.99531 * 16 15 14 31 31 H 1.08998 * 109.47257 * 50.00066 * 16 15 14 32 32 H 1.09003 * 109.46620 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47250 * 299.99434 * 17 16 15 34 34 H 1.08998 * 109.47213 * 60.00154 * 17 16 15 35 35 H 1.09004 * 109.46200 * 58.27491 * 18 15 14 36 36 H 1.09002 * 109.46493 * 178.24137 * 18 15 14 37 37 H 1.09007 * 109.50261 * 299.23737 * 19 18 15 38 38 H 1.09002 * 109.50979 * 179.11812 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2130 0.0000 4 1 3.0549 1.2567 0.3950 5 6 1.4475 2.3714 -0.5130 6 7 0.3970 2.2743 -1.2843 7 14 2.1462 4.0523 -0.0935 8 1 3.1629 4.4326 -1.1067 9 1 1.0519 5.0561 -0.0892 10 1 2.7792 4.0042 1.2490 11 6 2.1037 -1.3052 -0.0006 12 6 2.4676 -1.6834 -1.4377 13 6 3.3393 -2.9422 -1.4304 14 6 3.6506 -3.3496 -2.8724 15 7 2.3962 -3.6053 -3.5918 16 6 2.6592 -4.1319 -4.9377 17 6 1.3487 -4.6177 -5.5602 18 6 1.5633 -2.3974 -3.6528 19 6 1.1897 -1.9616 -2.2342 20 1 -0.5400 0.9307 0.0928 21 1 -0.5401 -0.9306 -0.0927 22 1 -0.0201 3.0751 -1.6387 23 1 1.4788 -2.0856 0.4335 24 1 3.0144 -1.1992 0.5889 25 1 3.0153 -0.8637 -1.9026 26 1 2.8063 -3.7511 -0.9308 27 1 4.2699 -2.7381 -0.9010 28 1 4.2593 -4.2538 -2.8710 29 1 4.1955 -2.5457 -3.3671 30 1 3.0865 -3.3447 -5.5588 31 1 3.3604 -4.9638 -4.8718 32 1 1.5439 -5.0089 -6.5587 33 1 0.9213 -5.4050 -4.9392 34 1 0.6474 -3.7859 -5.6262 35 1 2.1182 -1.5981 -4.1440 36 1 0.6560 -2.6100 -4.2182 37 1 0.6228 -2.7551 -1.7471 38 1 0.5845 -1.0561 -2.2790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -21.112964 kcal Electronic energy + Delta-G solvation = -15824.780772 eV Core-core repulsion = 13472.752090 eV Total energy + Delta-G solvation = -2352.028682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21842 -37.41806 -35.43968 -33.08862 -31.68503 -30.74206 -27.57521 -26.97038 -24.38379 -23.53844 -22.04550 -20.79360 -20.47213 -17.63566 -17.03253 -16.79358 -16.11004 -15.48572 -15.23654 -15.17226 -14.72767 -14.26637 -14.11277 -13.86344 -13.51402 -13.07081 -12.85271 -12.70328 -12.51121 -12.38638 -12.17787 -12.06746 -12.04297 -11.70749 -11.52615 -11.38794 -11.02058 -10.87866 -10.77594 -9.27573 -9.20041 -8.43733 -6.17313 1.30438 1.37809 1.50222 2.13557 2.29862 2.99004 3.34168 3.92441 3.97341 4.06130 4.19403 4.33664 4.41206 4.55162 4.57710 4.64224 4.67333 4.77164 4.88945 4.91210 4.97857 4.99614 5.12258 5.17591 5.23744 5.28128 5.31007 5.33771 5.40884 5.53831 5.57512 5.67152 6.12487 6.16629 6.25229 6.36946 6.95339 7.22994 7.48990 8.56645 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.006647 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.472573 B = 4211.639134 C = 4345.184066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.367 4.367 2 C 0.030 3.970 3 C -0.508 4.508 4 H 0.060 0.940 5 C 0.031 3.969 6 N -0.831 5.831 7 Si 0.965 3.035 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.261 1.261 11 C -0.068 4.068 12 C -0.065 4.065 13 C -0.104 4.104 14 C 0.059 3.941 15 N -0.544 5.544 16 C 0.048 3.952 17 C -0.146 4.146 18 C 0.065 3.935 19 C -0.099 4.099 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.275 0.725 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -10.096 -6.651 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.407 4.407 2 C 0.029 3.971 3 C -0.539 4.539 4 H 0.078 0.922 5 C -0.181 4.181 6 N -0.459 5.459 7 Si 0.787 3.213 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.185 1.185 11 C -0.106 4.106 12 C -0.084 4.084 13 C -0.142 4.142 14 C -0.068 4.068 15 N -0.270 5.270 16 C -0.080 4.080 17 C -0.203 4.203 18 C -0.063 4.063 19 C -0.137 4.137 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.499 -10.341 -6.539 13.414 hybrid contribution 0.250 1.811 -0.277 1.849 sum 5.749 -8.530 -6.816 12.340 Atomic orbital electron populations 1.23031 0.95077 0.96098 1.26531 1.18754 0.93245 0.92777 0.92371 1.19427 1.01108 0.94583 1.38785 0.92201 1.26619 0.94816 1.04226 0.92450 1.69934 1.20196 1.31318 1.24425 0.85484 0.78630 0.77435 0.79749 1.18992 1.19832 1.18469 1.20623 0.98513 0.95191 0.96264 1.20891 0.95966 0.96656 0.94873 1.21621 0.99560 0.96557 0.96425 1.22100 0.90473 1.00320 0.93930 1.62031 1.17302 1.29885 1.17764 1.22161 0.98834 0.99132 0.87833 1.21787 0.96576 1.01186 1.00770 1.21998 0.97427 0.90137 0.96688 1.21474 0.97466 0.99823 0.94926 0.92537 0.93717 0.91474 0.93278 0.92814 0.94228 0.91153 0.90670 0.88621 0.95830 0.95481 0.89279 0.90531 0.92129 0.93606 0.96624 0.90271 0.92439 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.37 -21.06 11.65 67.08 0.78 -20.28 16 2 C 0.03 1.64 4.41 -20.16 -0.09 1.55 16 3 C -0.51 -28.78 9.04 23.22 0.21 -28.57 16 4 H 0.06 3.28 7.91 -2.91 -0.02 3.25 16 5 C 0.03 1.72 5.09 85.37 0.43 2.16 16 6 N -0.83 -47.66 11.03 21.89 0.24 -47.42 16 7 Si 0.96 41.65 29.60 68.60 2.03 43.68 16 8 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 C -0.07 -3.06 4.83 29.85 0.14 -2.92 16 12 C -0.07 -2.60 2.24 -10.71 -0.02 -2.62 16 13 C -0.10 -3.18 5.38 30.65 0.16 -3.02 16 14 C 0.06 1.61 5.46 86.33 0.47 2.08 16 15 N -0.54 -15.46 4.66 -896.36 -4.17 -19.63 16 16 C 0.05 1.07 5.68 86.30 0.49 1.56 16 17 C -0.15 -2.91 9.84 71.98 0.71 -2.21 16 18 C 0.07 2.20 5.29 86.33 0.46 2.65 16 19 C -0.10 -3.98 4.96 30.65 0.15 -3.83 16 20 H 0.06 3.53 6.25 -2.91 -0.02 3.51 16 21 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 22 H 0.28 14.51 8.29 -92.71 -0.77 13.75 16 23 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 24 H 0.05 2.28 8.12 -2.39 -0.02 2.26 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.07 8.02 -2.39 -0.02 2.05 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.09 1.66 7.99 -2.39 -0.02 1.64 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.01 6.43 -2.39 -0.02 0.99 16 35 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.08 2.49 6.21 -2.39 -0.01 2.47 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 38 H 0.05 2.23 6.70 -2.39 -0.02 2.21 16 Total: -1.00 -62.04 295.74 2.99 -59.05 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.99 Total: 17.77 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.90 Total: -53.45 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -3.93 Total: -67.05 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -62.04 2.99 -59.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.937 kcal (2) G-P(sol) polarization free energy of solvation -62.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds