Wall clock time and date at job start Mon Mar 30 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48555 * 111.00238 * 2 1 4 4 C 1.54384 * 104.59593 * 159.04003 * 3 2 1 5 5 C 1.54255 * 105.05948 * 336.15073 * 4 3 2 6 6 H 1.08993 * 110.32917 * 118.89617 * 5 4 3 7 7 C 1.50702 * 110.32059 * 241.10466 * 5 4 3 8 8 H 1.08002 * 120.00651 * 115.63886 * 7 5 4 9 9 C 1.37879 * 120.00048 * 295.63401 * 7 5 4 10 10 N 1.31521 * 119.99655 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00198 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47285 * 90.00200 * 11 9 7 13 13 H 1.48501 * 109.46771 * 210.00123 * 11 9 7 14 14 H 1.48498 * 109.47077 * 329.99909 * 11 9 7 15 15 C 1.48561 * 110.99853 * 115.42054 * 2 1 3 16 16 H 1.09002 * 110.41339 * 319.85141 * 15 2 1 17 17 C 1.53001 * 110.41532 * 82.17926 * 15 2 1 18 18 C 1.55236 * 110.46775 * 288.96166 * 17 15 2 19 19 C 1.54886 * 102.58731 * 203.39052 * 18 17 15 20 20 C 1.54268 * 104.31363 * 37.93187 * 19 18 17 21 21 C 1.53875 * 106.59766 * 336.32236 * 20 19 18 22 22 H 1.08997 * 109.46585 * 309.19680 * 1 2 3 23 23 H 1.08997 * 109.47106 * 69.19407 * 1 2 3 24 24 H 1.08998 * 109.47024 * 189.19930 * 1 2 3 25 25 H 1.08995 * 110.41131 * 277.81925 * 3 2 1 26 26 H 1.08997 * 110.40915 * 40.26336 * 3 2 1 27 27 H 1.09000 * 110.32044 * 95.04151 * 4 3 2 28 28 H 1.08994 * 110.32502 * 217.14983 * 4 3 2 29 29 H 0.96996 * 119.99938 * 179.97438 * 10 9 7 30 30 H 1.09004 * 110.43282 * 51.60864 * 17 15 2 31 31 H 1.09000 * 110.89834 * 85.09956 * 18 17 15 32 32 H 1.09004 * 110.76315 * 321.62007 * 18 17 15 33 33 H 1.08998 * 110.48894 * 279.18722 * 19 18 17 34 34 H 1.09001 * 110.48333 * 156.67071 * 19 18 17 35 35 H 1.09005 * 110.03505 * 95.60443 * 20 19 18 36 36 H 1.08996 * 110.03380 * 216.99111 * 20 19 18 37 37 H 1.09002 * 110.03229 * 119.28057 * 21 20 19 38 38 H 1.09001 * 110.03527 * 240.67010 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4434 1.2500 0.5344 5 6 3.4433 -0.0540 1.3584 6 1 4.1483 -0.7694 0.9351 7 6 3.7895 0.2355 2.7963 8 1 3.0617 0.0559 3.5738 9 6 5.0356 0.7294 3.1194 10 7 5.9222 0.9475 2.1728 11 14 5.4649 1.0876 4.9017 12 1 6.0588 -0.1244 5.5210 13 1 6.4431 2.2034 4.9606 14 1 4.2343 1.4686 5.6404 15 6 2.0014 -0.5954 1.2527 16 1 1.4086 -0.2729 2.1087 17 6 2.0105 -2.1223 1.1560 18 6 0.5619 -2.6780 1.2068 19 6 0.7743 -4.1290 1.7053 20 6 1.9104 -4.0135 2.7425 21 6 2.6964 -2.7376 2.3933 22 1 -0.3632 0.6495 0.7964 23 1 -0.3633 0.3650 -0.9606 24 1 -0.3633 -1.0144 0.1643 25 1 2.0080 1.7915 -1.0120 26 1 1.4099 2.0211 0.6602 27 1 4.1483 1.1747 -0.2935 28 1 3.6944 2.1003 1.1684 29 1 6.7986 1.2953 2.4000 30 1 2.5121 -2.4428 0.2429 31 1 0.1084 -2.6726 0.2157 32 1 -0.0447 -2.1117 1.9136 33 1 1.0749 -4.7755 0.8808 34 1 -0.1336 -4.5079 2.1746 35 1 1.4929 -3.9319 3.7461 36 1 2.5633 -4.8840 2.6797 37 1 2.6602 -2.0367 3.2273 38 1 3.7314 -2.9883 2.1611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260284808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:40 Heat of formation + Delta-G solvation = -32.101372 kcal Electronic energy + Delta-G solvation = -16429.342564 eV Core-core repulsion = 14076.837389 eV Total energy + Delta-G solvation = -2352.505175 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51132 -37.85994 -35.14630 -32.47470 -31.40886 -29.35100 -28.19022 -26.52384 -25.26080 -21.83440 -21.65319 -21.14838 -20.08589 -18.31506 -16.88510 -16.67890 -16.54349 -15.74179 -15.15442 -14.66587 -14.47914 -14.09826 -14.07375 -13.62769 -13.32049 -12.97388 -12.82828 -12.58605 -12.35036 -12.27478 -12.06849 -11.86487 -11.66642 -11.57498 -11.37199 -11.22729 -11.08147 -10.75664 -10.65576 -10.45485 -9.29624 -8.10241 -6.18378 1.39071 1.40291 1.49330 2.42749 3.20311 3.26745 3.84288 3.88634 4.03446 4.21525 4.28752 4.47075 4.48923 4.65185 4.68105 4.72548 4.76440 4.85177 4.85668 4.91358 4.95275 5.03181 5.11646 5.20097 5.20930 5.29436 5.37273 5.42223 5.53360 5.60243 5.64692 5.71245 5.79816 5.94708 6.04274 6.37206 6.46837 6.91447 7.47664 8.99141 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.011173 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.550301 B = 2505.424838 C = 3376.516268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.523 5.523 3 C 0.040 3.960 4 C -0.093 4.093 5 C 0.053 3.947 6 H -0.002 1.002 7 C -0.512 4.512 8 H 0.051 0.949 9 C 0.013 3.987 10 N -0.919 5.919 11 Si 0.945 3.055 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.086 3.914 16 H 0.029 0.971 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.113 4.113 22 H 0.019 0.981 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.259 0.741 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 -6.083 -1.574 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.246 5.246 3 C -0.088 4.088 4 C -0.132 4.132 5 C 0.034 3.966 6 H 0.016 0.984 7 C -0.550 4.550 8 H 0.069 0.931 9 C -0.185 4.185 10 N -0.559 5.559 11 Si 0.772 3.228 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.022 4.022 16 H 0.047 0.953 17 C -0.085 4.085 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.151 4.151 22 H 0.038 0.962 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.677 -6.314 -2.080 12.577 hybrid contribution 0.730 1.099 1.591 2.067 sum -9.947 -5.215 -0.489 11.242 Atomic orbital electron populations 1.22831 0.87601 1.03015 1.01067 1.65277 1.08755 1.14854 1.35731 1.23082 0.95524 0.90089 1.00094 1.22083 0.93865 0.99837 0.97388 1.19281 0.91049 0.92139 0.94114 0.98391 1.21393 0.98448 1.42220 0.92947 0.93109 1.25678 0.96555 0.95796 1.00489 1.70110 1.06016 1.46132 1.33618 0.85746 0.78062 0.77761 0.81277 1.20225 1.21185 1.19282 1.22679 0.95841 0.94549 0.89111 0.95300 1.21811 0.96603 0.92674 0.97438 1.22711 0.95237 0.96098 1.01005 1.22341 0.98318 0.96331 0.98400 1.22153 0.97450 0.96816 0.99456 1.22051 0.98129 0.96980 0.97977 0.96238 0.90522 0.89250 0.90028 0.94703 0.95370 0.94448 0.93248 0.92365 0.90339 0.91979 0.91182 0.90170 0.91738 0.91588 0.92872 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.09 9.40 127.69 1.20 1.29 16 2 N -0.52 -19.68 5.34 -882.69 -4.71 -24.40 16 3 C 0.04 1.58 6.49 86.45 0.56 2.14 16 4 C -0.09 -4.57 5.86 31.49 0.18 -4.38 16 5 C 0.05 2.72 2.02 -10.64 -0.02 2.70 16 6 H 0.00 -0.12 7.85 -2.39 -0.02 -0.14 16 7 C -0.51 -28.01 7.13 25.60 0.18 -27.83 16 8 H 0.05 2.75 7.03 -2.91 -0.02 2.73 16 9 C 0.01 0.75 5.15 84.65 0.44 1.18 16 10 N -0.92 -54.25 12.59 21.45 0.27 -53.98 16 11 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 C 0.09 3.60 1.44 45.06 0.07 3.67 16 16 H 0.03 1.28 7.49 -2.39 -0.02 1.26 16 17 C -0.07 -2.41 2.53 -9.60 -0.02 -2.44 16 18 C -0.11 -3.12 4.52 32.01 0.14 -2.98 16 19 C -0.12 -2.77 6.82 31.67 0.22 -2.55 16 20 C -0.12 -3.38 6.80 31.32 0.21 -3.17 16 21 C -0.11 -4.21 5.56 31.32 0.17 -4.04 16 22 H 0.02 0.57 7.90 -2.39 -0.02 0.55 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.09 2.32 4.36 -2.39 -0.01 2.31 16 25 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.03 1.34 7.83 -2.39 -0.02 1.32 16 27 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.99 7.44 -2.39 -0.02 1.97 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.08 1.95 6.80 -2.39 -0.02 1.94 16 32 H 0.06 1.70 7.82 -2.39 -0.02 1.68 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 2.23 6.32 -2.39 -0.02 2.21 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -60.37 284.94 1.92 -58.46 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.33 Total: -36.40 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -4.44 Total: -78.38 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.37 1.92 -58.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.357 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds