Wall clock time and date at job start Mon Mar 30 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.49009 * 111.16293 * 2 1 4 4 C 1.54936 * 103.25751 * 159.69470 * 3 2 1 5 5 C 1.54591 * 102.92126 * 322.54125 * 4 3 2 6 6 H 1.09000 * 110.39331 * 262.99521 * 5 4 3 7 7 C 1.50704 * 110.30722 * 140.87416 * 5 4 3 8 8 H 1.07990 * 120.00231 * 298.93183 * 7 5 4 9 9 C 1.37883 * 119.99853 * 118.93540 * 7 5 4 10 10 N 1.31510 * 119.99764 * 177.89963 * 9 7 5 11 11 Si 1.86800 * 120.00014 * 357.89856 * 9 7 5 12 12 H 1.48503 * 109.46805 * 84.80920 * 11 9 7 13 13 H 1.48494 * 109.47098 * 204.80606 * 11 9 7 14 14 H 1.48502 * 109.47390 * 324.81011 * 11 9 7 15 15 C 1.47896 * 111.00281 * 117.19870 * 2 1 3 16 16 H 1.08998 * 109.91813 * 333.50856 * 15 2 1 17 17 C 1.53001 * 109.91650 * 94.60981 * 15 2 1 18 18 C 1.54265 * 110.02985 * 298.78047 * 17 15 2 19 19 C 1.54964 * 104.15892 * 217.13844 * 18 17 15 20 20 C 1.54885 * 102.78049 * 37.88784 * 19 18 17 21 21 C 1.53874 * 110.03334 * 181.56530 * 17 15 2 22 22 H 1.09004 * 109.47121 * 295.16606 * 1 2 3 23 23 H 1.08995 * 109.47341 * 55.16968 * 1 2 3 24 24 H 1.09002 * 109.46912 * 175.17151 * 1 2 3 25 25 H 1.08997 * 110.69174 * 41.23215 * 3 2 1 26 26 H 1.09003 * 110.75941 * 278.18859 * 3 2 1 27 27 H 1.09004 * 110.72662 * 204.18176 * 4 3 2 28 28 H 1.09005 * 110.87926 * 80.97368 * 4 3 2 29 29 H 0.97002 * 119.99688 * 180.02562 * 10 9 7 30 30 H 1.09001 * 110.01728 * 60.17149 * 17 15 2 31 31 H 1.09003 * 110.48704 * 335.78329 * 18 17 15 32 32 H 1.09001 * 110.48599 * 98.43141 * 18 17 15 33 33 H 1.09002 * 110.72345 * 279.57029 * 19 18 17 34 34 H 1.09001 * 110.92210 * 156.29817 * 19 18 17 35 35 H 1.08991 * 110.48919 * 203.40321 * 20 19 18 36 36 H 1.09005 * 110.59442 * 80.81556 * 20 19 18 37 37 H 1.08993 * 110.03387 * 238.56804 * 21 17 15 38 38 H 1.09011 * 110.03211 * 359.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.3896 0.0000 4 6 3.4542 1.2103 0.5233 5 6 3.3001 0.1066 1.5947 6 1 3.2171 0.5496 2.5872 7 6 4.4712 -0.8405 1.5420 8 1 4.6670 -1.4077 0.6442 9 6 5.2925 -0.9831 2.6404 10 7 6.2896 -1.8399 2.6089 11 14 4.9888 0.0410 4.1729 12 1 3.9698 -0.6278 5.0211 13 1 6.2554 0.1777 4.9358 14 1 4.4998 1.3870 3.7800 15 6 1.9991 -0.6311 1.2280 16 1 1.2759 -0.5332 2.0377 17 6 2.2938 -2.1098 0.9686 18 6 0.9962 -2.8464 0.5768 19 6 1.1315 -4.2361 1.2490 20 6 1.8057 -3.8982 2.6018 21 6 2.8086 -2.7784 2.2553 22 1 -0.3633 0.4370 0.9302 23 1 -0.3634 0.5869 -0.8435 24 1 -0.3633 -1.0240 -0.0865 25 1 1.4309 2.0256 0.6721 26 1 2.0111 1.8023 -1.0089 27 1 3.8197 2.1344 0.9713 28 1 4.1185 0.8819 -0.2761 29 1 6.8672 -1.9404 3.3817 30 1 3.0338 -2.2091 0.1744 31 1 0.1255 -2.3181 0.9652 32 1 0.9288 -2.9506 -0.5061 33 1 1.7668 -4.8922 0.6540 34 1 0.1526 -4.6887 1.4077 35 1 2.3282 -4.7697 2.9959 36 1 1.0674 -3.5404 3.3195 37 1 3.7981 -3.2028 2.0854 38 1 2.8490 -2.0492 3.0646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260284821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:42 Heat of formation + Delta-G solvation = -23.201536 kcal Electronic energy + Delta-G solvation = -16766.563774 eV Core-core repulsion = 14414.444525 eV Total energy + Delta-G solvation = -2352.119249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68989 -37.73336 -35.11507 -32.89270 -31.36093 -29.25406 -28.14283 -26.55221 -25.20604 -21.91449 -21.34588 -21.18928 -20.18628 -18.61367 -17.04803 -16.52024 -16.30602 -15.72249 -15.21625 -14.87440 -14.56998 -14.02462 -13.95314 -13.64713 -13.58064 -13.07468 -12.98742 -12.48594 -12.26032 -12.19095 -11.79347 -11.70685 -11.63985 -11.46349 -11.34190 -11.23852 -11.16199 -10.88640 -10.62235 -10.48766 -9.17052 -8.16248 -6.09956 1.31884 1.34860 1.41782 2.38834 3.16785 3.24214 3.94616 3.99013 4.07720 4.17935 4.25628 4.36438 4.46182 4.62193 4.69267 4.76026 4.79723 4.81999 4.89649 4.92205 4.99693 5.07004 5.11111 5.15116 5.16818 5.31660 5.34700 5.40499 5.43140 5.54464 5.66974 5.82546 5.83426 5.94795 6.17038 6.37967 6.53510 6.87635 7.47108 9.00054 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.014736 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.286236 B = 1899.689936 C = 2785.889159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.528 5.528 3 C 0.040 3.960 4 C -0.118 4.118 5 C -0.008 4.008 6 H 0.030 0.970 7 C -0.465 4.465 8 H 0.039 0.961 9 C 0.025 3.975 10 N -0.945 5.945 11 Si 0.917 3.083 12 H -0.270 1.270 13 H -0.294 1.294 14 H -0.256 1.256 15 C 0.085 3.915 16 H 0.032 0.968 17 C -0.040 4.040 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.085 4.085 22 H 0.023 0.977 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.260 0.740 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 1.858 -1.947 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.252 5.252 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.027 4.027 6 H 0.048 0.952 7 C -0.503 4.503 8 H 0.058 0.942 9 C -0.172 4.172 10 N -0.586 5.586 11 Si 0.744 3.256 12 H -0.195 1.195 13 H -0.221 1.221 14 H -0.180 1.180 15 C -0.023 4.023 16 H 0.049 0.951 17 C -0.059 4.059 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.168 4.168 21 C -0.123 4.123 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.832 1.512 -2.315 13.127 hybrid contribution 0.506 0.786 1.632 1.880 sum -12.327 2.298 -0.683 12.558 Atomic orbital electron populations 1.22729 0.87359 1.03095 1.00494 1.64737 1.08511 1.14674 1.37291 1.23272 0.94723 0.89815 1.00901 1.22598 0.96054 0.98132 0.98853 1.20181 0.93803 0.93926 0.94824 0.95182 1.20874 1.08888 1.21625 0.98910 0.94237 1.25600 0.95059 0.95911 1.00595 1.70015 1.19490 1.37780 1.31328 0.86203 0.77261 0.80981 0.81149 1.19514 1.22127 1.18027 1.22557 0.95219 0.95183 0.89348 0.95051 1.21233 0.95574 0.92736 0.96405 1.22534 0.97191 0.95399 0.99863 1.22468 1.00493 0.96939 0.95493 1.22498 0.98212 0.98088 0.97995 1.21864 0.97367 0.96125 0.96953 0.95836 0.90402 0.90219 0.93601 0.89394 0.92321 0.92858 0.93124 0.94045 0.91102 0.91852 0.92350 0.89899 0.92521 0.91563 0.94666 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 8.98 127.69 1.15 1.45 16 2 N -0.53 -18.22 5.06 -882.76 -4.46 -22.68 16 3 C 0.04 1.32 6.58 86.56 0.57 1.88 16 4 C -0.12 -4.73 6.60 31.80 0.21 -4.52 16 5 C -0.01 -0.35 2.52 -10.66 -0.03 -0.38 16 6 H 0.03 1.39 4.74 -2.39 -0.01 1.38 16 7 C -0.46 -25.12 5.12 25.60 0.13 -24.99 16 8 H 0.04 2.43 6.79 -2.92 -0.02 2.41 16 9 C 0.02 1.39 4.46 84.66 0.38 1.77 16 10 N -0.95 -57.44 13.96 21.45 0.30 -57.14 16 11 Si 0.92 43.92 26.59 68.60 1.82 45.75 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.26 -11.55 6.64 99.48 0.66 -10.89 16 15 C 0.09 3.40 1.87 45.06 0.08 3.48 16 16 H 0.03 1.22 7.61 -2.39 -0.02 1.20 16 17 C -0.04 -1.64 2.12 -10.07 -0.02 -1.66 16 18 C -0.11 -3.55 5.01 31.69 0.16 -3.39 16 19 C -0.12 -3.40 6.91 31.91 0.22 -3.18 16 20 C -0.13 -4.41 6.83 31.67 0.22 -4.20 16 21 C -0.08 -3.69 4.38 31.32 0.14 -3.55 16 22 H 0.02 0.60 7.88 -2.38 -0.02 0.58 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 1.99 5.40 -2.39 -0.01 1.97 16 25 H 0.05 1.36 8.03 -2.39 -0.02 1.34 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.05 2.31 7.86 -2.38 -0.02 2.29 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.04 1.98 6.66 -2.39 -0.02 1.97 16 31 H 0.07 2.02 5.93 -2.39 -0.01 2.00 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.03 1.80 7.38 -2.39 -0.02 1.78 16 38 H 0.03 1.61 6.23 -2.38 -0.01 1.59 16 Total: -1.00 -60.70 275.78 1.83 -58.87 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.97 Total: 12.48 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.20 Total: -37.27 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -4.16 Total: -79.83 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.82 Total: 45.75 kcal Total: -60.70 1.83 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.670 kcal (2) G-P(sol) polarization free energy of solvation -60.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds