Wall clock time and date at job start Mon Mar 30 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48554 * 111.00060 * 2 1 4 4 C 1.54385 * 104.59622 * 200.95888 * 3 2 1 5 5 C 1.54264 * 105.05582 * 23.84824 * 4 3 2 6 6 H 1.08996 * 110.32156 * 240.99964 * 5 4 3 7 7 C 1.52999 * 110.31924 * 118.89995 * 5 4 3 8 8 H 1.09003 * 109.47200 * 294.95392 * 7 5 4 9 9 C 1.53001 * 109.47325 * 54.94917 * 7 5 4 10 10 C 1.50697 * 109.47191 * 184.99635 * 9 7 5 11 11 H 1.07995 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99737 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46886 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.47408 * 60.00397 * 14 12 10 17 17 H 1.48500 * 109.47296 * 299.99686 * 14 12 10 18 18 C 1.53001 * 109.47139 * 174.94978 * 7 5 4 19 19 C 1.52998 * 117.49843 * 135.10225 * 18 7 5 20 20 C 1.52996 * 117.49874 * 66.43919 * 18 7 5 21 21 C 1.48559 * 111.00220 * 244.57584 * 2 1 3 22 22 H 1.09004 * 109.46817 * 59.87611 * 1 2 3 23 23 H 1.08999 * 109.46976 * 179.87271 * 1 2 3 24 24 H 1.08994 * 109.47344 * 299.88039 * 1 2 3 25 25 H 1.08999 * 110.41518 * 82.17377 * 3 2 1 26 26 H 1.09000 * 110.51092 * 319.78811 * 3 2 1 27 27 H 1.08999 * 110.32018 * 264.95837 * 4 3 2 28 28 H 1.08999 * 110.32481 * 142.74785 * 4 3 2 29 29 H 1.09007 * 109.46812 * 65.00031 * 9 7 5 30 30 H 1.09002 * 109.47236 * 305.00060 * 9 7 5 31 31 H 0.96994 * 120.00124 * 359.97438 * 13 12 10 32 32 H 1.08999 * 115.55045 * 280.77285 * 18 7 5 33 33 H 1.08999 * 117.49746 * 359.97438 * 19 18 7 34 34 H 1.08997 * 117.50218 * 145.02517 * 19 18 7 35 35 H 1.09000 * 117.50446 * 214.98375 * 20 18 7 36 36 H 1.09006 * 117.49895 * 359.97438 * 20 18 7 37 37 H 1.08999 * 110.41016 * 40.26545 * 21 2 1 38 38 H 1.08997 * 110.41530 * 277.82128 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2501 -0.5344 5 6 3.4433 -0.0541 -1.3584 6 1 4.1497 -0.7687 -0.9361 7 6 3.7949 0.2398 -2.8182 8 1 3.0119 0.8532 -3.2641 9 6 5.1275 0.9889 -2.8810 10 6 5.4138 1.3860 -4.3063 11 1 4.7150 1.1301 -5.0889 12 6 6.5679 2.0760 -4.6111 13 7 7.4191 2.3872 -3.6581 14 14 6.9224 2.5688 -6.3777 15 1 8.2159 3.2958 -6.4387 16 1 5.8356 3.4511 -6.8732 17 1 6.9975 1.3520 -7.2255 18 6 3.9128 -1.0764 -3.5892 19 6 3.2431 -1.1530 -4.9627 20 6 2.6392 -1.9040 -3.7733 21 6 2.0015 -0.5954 -1.2526 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3634 0.5119 0.8910 25 1 2.0078 1.7917 1.0120 26 1 1.4105 2.0228 -0.6591 27 1 4.1483 1.1747 0.2935 28 1 3.6938 2.0995 -1.1699 29 1 5.9255 0.3418 -2.5169 30 1 5.0718 1.8823 -2.2591 31 1 7.2348 2.1316 -2.7408 32 1 4.8495 -1.6175 -3.4552 33 1 2.7181 -0.2659 -5.3168 34 1 3.7389 -1.7448 -5.7321 35 1 2.7379 -2.9894 -3.7607 36 1 1.7173 -1.5109 -3.3447 37 1 1.4100 -0.2714 -2.1089 38 1 2.0080 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:42 Heat of formation + Delta-G solvation = 10.786386 kcal Electronic energy + Delta-G solvation = -16016.672859 eV Core-core repulsion = 13666.027437 eV Total energy + Delta-G solvation = -2350.645422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32799 -36.84164 -33.78819 -32.38172 -29.64763 -28.43556 -25.50526 -24.09405 -22.16857 -21.92449 -20.71800 -20.12136 -18.98796 -16.69106 -15.86112 -15.18737 -14.73347 -14.17026 -14.11447 -13.68453 -13.25086 -12.99886 -12.61636 -12.00752 -11.86303 -11.45345 -11.33262 -11.24590 -10.99366 -10.92967 -10.72991 -10.53402 -10.23388 -10.16278 -10.04834 -9.76283 -9.29257 -9.02464 -8.45416 -8.31613 -8.23919 -6.27662 -3.95197 3.46348 3.48024 3.66616 4.18239 4.47104 4.59553 4.96157 4.98051 5.20208 5.34656 5.45361 5.48577 5.51107 5.51300 5.57625 5.66340 5.81903 5.83717 5.88885 6.04590 6.10006 6.15060 6.16972 6.35252 6.44363 6.45826 6.56949 6.61866 6.72266 6.93078 6.99915 7.07173 7.15749 7.48098 7.61282 8.32005 8.56727 8.97654 9.75427 11.12652 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.007903 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.905337 B = 3542.297594 C = 4117.651698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.082 4.082 6 H 0.073 0.927 7 C -0.037 4.037 8 H 0.055 0.945 9 C 0.015 3.985 10 C -0.590 4.590 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 1.064 2.936 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.289 1.289 18 C -0.108 4.108 19 C -0.170 4.170 20 C -0.207 4.207 21 C 0.040 3.960 22 H 0.025 0.975 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 -5.247 4.249 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.245 5.245 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.101 4.101 6 H 0.091 0.909 7 C -0.056 4.056 8 H 0.074 0.926 9 C -0.021 4.021 10 C -0.629 4.629 11 H 0.069 0.931 12 C -0.191 4.191 13 N -0.555 5.555 14 Si 0.893 3.107 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.216 1.216 18 C -0.126 4.126 19 C -0.207 4.207 20 C -0.244 4.244 21 C -0.088 4.088 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.024 0.976 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.318 -4.776 3.760 11.975 hybrid contribution -1.466 -0.398 0.167 1.529 sum -11.784 -5.175 3.926 13.456 Atomic orbital electron populations 1.22476 0.88843 1.01723 1.00440 1.65378 1.07459 1.15717 1.35986 1.23133 0.96230 0.89739 1.00491 1.22471 0.95112 0.99014 0.99517 1.21926 0.95051 0.96457 0.96699 0.90883 1.20795 1.00253 0.93693 0.90867 0.92615 1.19318 0.90832 0.94326 0.97650 1.22064 1.08316 1.39090 0.93391 0.93077 1.25751 0.93146 0.94618 1.05547 1.70775 1.37408 1.45314 1.01977 0.83609 0.76114 0.76341 0.74626 1.20928 1.21643 1.21568 1.22103 0.94812 0.97545 0.98187 1.22809 1.04196 1.01908 0.91815 1.23194 0.98687 0.97889 1.04660 1.23401 0.95885 0.99666 0.89799 0.95618 0.91597 0.91699 0.90728 0.94157 0.91531 0.89976 0.97585 0.96882 0.92183 0.88631 0.89384 0.89741 0.89955 0.89154 0.93753 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 60.07 0.57 0.74 16 2 N -0.52 -7.53 5.66 -238.24 -1.35 -8.88 16 3 C 0.03 0.46 6.49 -2.18 -0.01 0.45 16 4 C -0.12 -2.06 6.05 -25.34 -0.15 -2.21 16 5 C -0.08 -1.42 2.64 -89.24 -0.24 -1.65 16 6 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 7 C -0.04 -0.74 1.42 -90.62 -0.13 -0.87 16 8 H 0.06 1.17 7.79 -51.93 -0.40 0.76 16 9 C 0.02 0.38 3.53 -27.88 -0.10 0.28 16 10 C -0.59 -16.38 8.61 -34.44 -0.30 -16.68 16 11 H 0.05 1.40 6.91 -52.49 -0.36 1.04 16 12 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 13 N -0.92 -28.12 13.65 55.43 0.76 -27.36 16 14 Si 1.06 25.51 29.90 -169.99 -5.08 20.43 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.11 -2.03 4.48 -90.62 -0.41 -2.43 16 19 C -0.17 -2.98 9.44 -26.69 -0.25 -3.23 16 20 C -0.21 -3.19 9.01 -26.69 -0.24 -3.43 16 21 C 0.04 0.60 4.11 -2.19 -0.01 0.59 16 22 H 0.03 0.30 7.98 -51.93 -0.41 -0.12 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.58 7.97 -51.93 -0.41 0.16 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.52 6.05 -51.93 -0.31 1.20 16 29 H 0.01 0.16 8.01 -51.92 -0.42 -0.26 16 30 H 0.01 0.34 5.91 -51.93 -0.31 0.03 16 31 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 33 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.31 5.37 -51.93 -0.28 1.03 16 37 H 0.04 0.68 6.07 -51.93 -0.32 0.36 16 38 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 LS Contribution 291.49 15.07 4.39 4.39 Total: -1.00 -29.60 291.49 -9.16 -38.76 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.52 Total: 0.85 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -1.36 Total: -28.19 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.59 Total: -36.25 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.60 -9.16 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.546 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds