Wall clock time and date at job start Mon Mar 30 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48554 * 111.00060 * 2 1 4 4 C 1.54385 * 104.59622 * 200.95888 * 3 2 1 5 5 C 1.54264 * 105.05582 * 23.84824 * 4 3 2 6 6 H 1.08996 * 110.32156 * 240.99964 * 5 4 3 7 7 C 1.52999 * 110.31924 * 118.89995 * 5 4 3 8 8 H 1.09003 * 109.47200 * 294.95392 * 7 5 4 9 9 C 1.53001 * 109.47325 * 54.94917 * 7 5 4 10 10 C 1.50697 * 109.47191 * 184.99635 * 9 7 5 11 11 H 1.07995 * 120.00335 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99737 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99631 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46886 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.47408 * 60.00397 * 14 12 10 17 17 H 1.48500 * 109.47296 * 299.99686 * 14 12 10 18 18 C 1.53001 * 109.47139 * 174.94978 * 7 5 4 19 19 C 1.52998 * 117.49843 * 135.10225 * 18 7 5 20 20 C 1.52996 * 117.49874 * 66.43919 * 18 7 5 21 21 C 1.48559 * 111.00220 * 244.57584 * 2 1 3 22 22 H 1.09004 * 109.46817 * 59.87611 * 1 2 3 23 23 H 1.08999 * 109.46976 * 179.87271 * 1 2 3 24 24 H 1.08994 * 109.47344 * 299.88039 * 1 2 3 25 25 H 1.08999 * 110.41518 * 82.17377 * 3 2 1 26 26 H 1.09000 * 110.51092 * 319.78811 * 3 2 1 27 27 H 1.08999 * 110.32018 * 264.95837 * 4 3 2 28 28 H 1.08999 * 110.32481 * 142.74785 * 4 3 2 29 29 H 1.09007 * 109.46812 * 65.00031 * 9 7 5 30 30 H 1.09002 * 109.47236 * 305.00060 * 9 7 5 31 31 H 0.96994 * 120.00124 * 359.97438 * 13 12 10 32 32 H 1.08999 * 115.55045 * 280.77285 * 18 7 5 33 33 H 1.08999 * 117.49746 * 359.97438 * 19 18 7 34 34 H 1.08997 * 117.50218 * 145.02517 * 19 18 7 35 35 H 1.09000 * 117.50446 * 214.98375 * 20 18 7 36 36 H 1.09006 * 117.49895 * 359.97438 * 20 18 7 37 37 H 1.08999 * 110.41016 * 40.26545 * 21 2 1 38 38 H 1.08997 * 110.41530 * 277.82128 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2501 -0.5344 5 6 3.4433 -0.0541 -1.3584 6 1 4.1497 -0.7687 -0.9361 7 6 3.7949 0.2398 -2.8182 8 1 3.0119 0.8532 -3.2641 9 6 5.1275 0.9889 -2.8810 10 6 5.4138 1.3860 -4.3063 11 1 4.7150 1.1301 -5.0889 12 6 6.5679 2.0760 -4.6111 13 7 7.4191 2.3872 -3.6581 14 14 6.9224 2.5688 -6.3777 15 1 8.2159 3.2958 -6.4387 16 1 5.8356 3.4511 -6.8732 17 1 6.9975 1.3520 -7.2255 18 6 3.9128 -1.0764 -3.5892 19 6 3.2431 -1.1530 -4.9627 20 6 2.6392 -1.9040 -3.7733 21 6 2.0015 -0.5954 -1.2526 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3634 0.5119 0.8910 25 1 2.0078 1.7917 1.0120 26 1 1.4105 2.0228 -0.6591 27 1 4.1483 1.1747 0.2935 28 1 3.6938 2.0995 -1.1699 29 1 5.9255 0.3418 -2.5169 30 1 5.0718 1.8823 -2.2591 31 1 7.2348 2.1316 -2.7408 32 1 4.8495 -1.6175 -3.4552 33 1 2.7181 -0.2659 -5.3168 34 1 3.7389 -1.7448 -5.7321 35 1 2.7379 -2.9894 -3.7607 36 1 1.7173 -1.5109 -3.3447 37 1 1.4100 -0.2714 -2.1089 38 1 2.0080 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260286525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:42 Heat of formation + Delta-G solvation = -6.960998 kcal Electronic energy + Delta-G solvation = -16017.442443 eV Core-core repulsion = 13666.027437 eV Total energy + Delta-G solvation = -2351.415007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67884 -38.19047 -35.66468 -34.01288 -31.16136 -29.86827 -27.02672 -25.60215 -24.04295 -23.26121 -21.95646 -21.52011 -20.52436 -18.80792 -17.10450 -16.51561 -16.16627 -15.62738 -15.52464 -15.26379 -14.94371 -14.38140 -13.91754 -13.68055 -13.47284 -13.02645 -12.66553 -12.64574 -12.45755 -12.41310 -12.15010 -12.06222 -11.97458 -11.71136 -11.55286 -11.38450 -10.85057 -10.70312 -10.45088 -10.33137 -9.47220 -8.59618 -6.27390 1.51193 1.59505 1.78071 2.58908 2.97470 3.17368 3.24270 3.67158 3.69418 3.88316 4.06699 4.15984 4.21597 4.31061 4.45589 4.49694 4.56489 4.60211 4.68361 4.76306 4.80494 4.84878 4.92179 4.98433 5.02786 5.09001 5.13382 5.23482 5.27428 5.29673 5.32959 5.56186 5.68872 5.83417 6.07096 6.13405 6.29861 6.68855 7.52291 8.80866 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.007903 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.905337 B = 3542.297594 C = 4117.651698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.039 3.961 4 C -0.126 4.126 5 C -0.081 4.081 6 H 0.064 0.936 7 C -0.023 4.023 8 H 0.045 0.955 9 C 0.020 3.980 10 C -0.596 4.596 11 H 0.054 0.946 12 C -0.044 4.044 13 N -0.946 5.946 14 Si 1.111 2.889 15 H -0.287 1.287 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.138 4.138 19 C -0.180 4.180 20 C -0.166 4.166 21 C 0.050 3.950 22 H 0.027 0.973 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.055 0.945 29 H -0.021 1.021 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 -6.293 3.812 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.253 5.253 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.100 4.100 6 H 0.083 0.917 7 C -0.042 4.042 8 H 0.064 0.936 9 C -0.017 4.017 10 C -0.634 4.634 11 H 0.072 0.928 12 C -0.240 4.240 13 N -0.584 5.584 14 Si 0.933 3.067 15 H -0.213 1.213 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.157 4.157 19 C -0.217 4.217 20 C -0.203 4.203 21 C -0.077 4.077 22 H 0.046 0.954 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.074 0.926 29 H -0.002 1.002 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.532 -5.836 3.334 14.221 hybrid contribution -0.786 -0.077 0.346 0.862 sum -13.318 -5.913 3.681 15.030 Atomic orbital electron populations 1.22570 0.86784 1.02971 1.01247 1.65393 1.09410 1.15198 1.35328 1.23081 0.94293 0.90272 1.01270 1.22423 0.97121 0.97797 0.99065 1.21847 0.96869 0.96644 0.94659 0.91720 1.20531 0.96748 0.93758 0.93122 0.93623 1.19227 0.92929 0.93692 0.95856 1.22460 1.08053 1.38105 0.94757 0.92783 1.27255 0.93319 0.94583 1.08835 1.70909 1.38552 1.47228 1.01761 0.83012 0.76303 0.77024 0.70371 1.21255 1.19608 1.19604 1.21971 0.96201 0.97775 0.99715 1.22875 1.04493 1.02454 0.91902 1.23243 0.96890 0.98750 1.01388 1.23274 0.93777 1.00268 0.90406 0.95427 0.90162 0.90289 0.89123 0.93971 0.91644 0.92595 1.00230 0.98627 0.93713 0.90405 0.90089 0.89068 0.87553 0.87708 0.93606 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.53 127.69 1.22 1.47 16 2 N -0.53 -13.92 5.66 -907.64 -5.14 -19.05 16 3 C 0.04 1.06 6.49 86.45 0.56 1.63 16 4 C -0.13 -4.26 6.05 31.49 0.19 -4.07 16 5 C -0.08 -2.79 2.64 -9.90 -0.03 -2.81 16 6 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 7 C -0.02 -0.92 1.42 -10.79 -0.02 -0.94 16 8 H 0.05 1.92 7.79 -2.39 -0.02 1.91 16 9 C 0.02 1.02 3.53 29.85 0.11 1.13 16 10 C -0.60 -33.80 8.61 25.60 0.22 -33.58 16 11 H 0.05 2.98 6.91 -2.91 -0.02 2.96 16 12 C -0.04 -2.55 5.46 84.66 0.46 -2.09 16 13 N -0.95 -59.80 13.65 21.45 0.29 -59.51 16 14 Si 1.11 51.34 29.90 68.60 2.05 53.39 16 15 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 C -0.14 -5.12 4.48 -10.80 -0.05 -5.17 16 19 C -0.18 -6.04 9.44 30.62 0.29 -5.75 16 20 C -0.17 -4.62 9.01 30.62 0.28 -4.34 16 21 C 0.05 1.39 4.11 86.45 0.36 1.75 16 22 H 0.03 0.55 7.98 -2.38 -0.02 0.53 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.04 1.14 7.97 -2.39 -0.02 1.12 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.17 6.05 -2.39 -0.01 2.15 16 29 H -0.02 -1.17 8.01 -2.38 -0.02 -1.18 16 30 H 0.00 -0.24 5.91 -2.39 -0.01 -0.25 16 31 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 32 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 34 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.10 2.65 5.37 -2.38 -0.01 2.63 16 37 H 0.05 1.27 6.07 -2.39 -0.01 1.26 16 38 H 0.09 2.30 7.70 -2.39 -0.02 2.28 16 Total: -1.00 -64.67 291.49 1.90 -62.77 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.11 Total: 15.18 kcal Atomic # 6 Polarization: -56.36 SS G_CDS: 3.59 Total: -52.78 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -4.84 Total: -78.56 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -64.67 1.90 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.813 kcal (2) G-P(sol) polarization free energy of solvation -64.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds