Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47448 * 110.99814 * 2 1 4 4 C 1.54321 * 107.23520 * 123.25714 * 3 2 1 5 5 C 1.55141 * 103.01767 * 22.28357 * 4 3 2 6 6 H 1.09001 * 110.98867 * 82.47496 * 5 4 3 7 7 C 1.52998 * 110.99396 * 206.25536 * 5 4 3 8 8 H 1.09003 * 109.46980 * 60.00039 * 7 5 4 9 9 C 1.53005 * 109.47171 * 300.00419 * 7 5 4 10 10 C 1.50699 * 109.47124 * 174.42144 * 9 7 5 11 11 H 1.07996 * 120.00097 * 4.21497 * 10 9 7 12 12 C 1.37878 * 119.99700 * 184.22203 * 10 9 7 13 13 N 1.31519 * 119.99922 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46619 * 89.99993 * 14 12 10 16 16 H 1.48497 * 109.46970 * 209.99710 * 14 12 10 17 17 H 1.48495 * 109.47157 * 329.99983 * 14 12 10 18 18 C 1.52993 * 109.47307 * 180.02562 * 7 5 4 19 19 C 1.52999 * 117.49883 * 5.44174 * 18 7 5 20 20 C 1.53002 * 117.49880 * 296.78018 * 18 7 5 21 21 C 1.47844 * 111.00416 * 120.84145 * 2 1 3 22 22 H 1.08995 * 109.47223 * 59.87799 * 1 2 3 23 23 H 1.09005 * 109.46411 * 179.87127 * 1 2 3 24 24 H 1.08993 * 109.47509 * 299.87043 * 1 2 3 25 25 H 1.08994 * 109.89362 * 242.66207 * 3 2 1 26 26 H 1.09004 * 109.89033 * 3.85410 * 3 2 1 27 27 H 1.08995 * 110.70668 * 140.66826 * 4 3 2 28 28 H 1.09000 * 110.70319 * 263.73296 * 4 3 2 29 29 H 1.09000 * 109.46452 * 294.42231 * 9 7 5 30 30 H 1.09001 * 109.47028 * 54.41257 * 9 7 5 31 31 H 0.97004 * 119.99714 * 179.97438 * 13 12 10 32 32 H 1.09006 * 115.54966 * 151.11151 * 18 7 5 33 33 H 1.08997 * 117.50087 * 359.97438 * 19 18 7 34 34 H 1.09005 * 117.49897 * 145.02125 * 19 18 7 35 35 H 1.09005 * 117.49865 * 214.97685 * 20 18 7 36 36 H 1.08995 * 117.49808 * 359.97438 * 20 18 7 37 37 H 1.09007 * 110.37153 * 332.46898 * 21 2 1 38 38 H 1.08995 * 110.37277 * 94.80627 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9158 1.5138 1.2325 5 6 3.3047 0.0446 1.5438 6 1 4.1306 -0.2829 0.9124 7 6 3.6483 -0.1295 3.0245 8 1 2.7842 0.1396 3.6321 9 6 4.8271 0.7770 3.3846 10 6 5.0778 0.7092 4.8690 11 1 4.5037 0.0315 5.4833 12 6 6.0402 1.5126 5.4430 13 7 6.7397 2.3377 4.6948 14 14 6.3505 1.4291 7.2831 15 1 7.3908 0.4072 7.5637 16 1 6.8147 2.7540 7.7674 17 1 5.0929 1.0598 7.9810 18 6 4.0265 -1.5876 3.2923 19 6 4.1206 -2.5258 2.0874 20 6 2.9492 -2.6500 3.0650 21 6 1.9989 -0.7076 1.1850 22 1 -0.3633 0.5157 -0.8888 23 1 -0.3632 -1.0278 -0.0023 24 1 -0.3634 0.5118 0.8911 25 1 2.5696 1.5541 -0.9104 26 1 1.1754 2.0893 0.0689 27 1 3.7999 2.1035 0.9905 28 1 2.3751 1.9575 2.0685 29 1 5.7172 0.4449 2.8502 30 1 4.5955 1.8038 3.1016 31 1 7.4165 2.9032 5.0987 32 1 4.7273 -1.7487 4.1116 33 1 3.9126 -2.1044 1.1040 34 1 4.8830 -3.3044 2.1141 35 1 2.9415 -3.5103 3.7344 36 1 1.9710 -2.3102 2.7251 37 1 1.2889 -0.6502 2.0102 38 1 2.2148 -1.7476 0.9408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = 19.594978 kcal Electronic energy + Delta-G solvation = -16019.679216 eV Core-core repulsion = 13669.415763 eV Total energy + Delta-G solvation = -2350.263453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56526 -36.79359 -33.48541 -32.13348 -29.80358 -28.50145 -25.76151 -24.36326 -22.19333 -21.86414 -20.66755 -20.34040 -18.32798 -16.31926 -16.01073 -15.21031 -14.60362 -14.35467 -14.06183 -13.88558 -13.17180 -12.73947 -12.55121 -11.98741 -11.91842 -11.51259 -11.24382 -11.12844 -10.96915 -10.89525 -10.85400 -10.45586 -10.37853 -10.15211 -9.81641 -9.75189 -9.32506 -8.95369 -8.82810 -8.32301 -8.13735 -5.97242 -3.98311 3.32584 3.39245 3.42292 4.21912 4.44316 4.48644 5.00105 5.04817 5.27783 5.36224 5.38755 5.49458 5.53653 5.57060 5.60946 5.65567 5.85462 5.86675 5.90118 6.04851 6.16762 6.22540 6.23816 6.33454 6.47615 6.55448 6.62052 6.71743 6.92827 7.01774 7.14783 7.19656 7.26843 7.72639 7.87242 8.03618 8.46930 9.08608 9.65095 11.14016 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.007599 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.261855 B = 3683.814647 C = 4191.637043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.042 4.042 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.117 4.117 19 C -0.197 4.197 20 C -0.205 4.205 21 C 0.036 3.964 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.024 0.976 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.014 0.986 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 -5.094 -7.349 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.088 4.088 4 C -0.172 4.172 5 C -0.107 4.107 6 H 0.099 0.901 7 C -0.061 4.061 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.135 4.135 19 C -0.234 4.234 20 C -0.241 4.241 21 C -0.091 4.091 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.201 -5.210 -7.802 13.141 hybrid contribution -0.048 0.404 1.803 1.848 sum -9.249 -4.807 -5.999 12.027 Atomic orbital electron populations 1.22499 0.88524 1.01558 1.00192 1.63638 1.07259 1.14572 1.40857 1.22866 0.97855 0.88995 0.99113 1.22792 0.99634 0.97833 0.96903 1.22445 0.96144 0.93806 0.98335 0.90061 1.20805 1.00419 0.93211 0.91688 0.92236 1.19111 0.91521 0.93987 0.95997 1.21267 1.18986 1.21677 0.93381 0.92642 1.25003 0.96193 0.95515 0.97700 1.69965 1.23689 1.24739 1.35156 0.86668 0.78459 0.77262 0.86062 1.20749 1.21324 1.19963 1.22470 1.00289 0.91481 0.99254 1.23223 1.00691 1.03482 0.95957 1.23170 0.94751 1.02313 1.03915 1.23623 0.96265 0.98926 0.90287 0.91849 0.91783 0.95709 0.90890 0.93309 0.90422 0.91434 0.96770 0.95889 0.93118 0.87051 0.88143 0.89985 0.90044 0.88962 0.93698 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 60.06 0.55 0.80 16 2 N -0.54 -7.72 5.44 -239.52 -1.30 -9.02 16 3 C 0.04 0.56 6.90 -2.83 -0.02 0.54 16 4 C -0.13 -2.20 5.24 -24.91 -0.13 -2.33 16 5 C -0.09 -1.51 1.85 -88.48 -0.16 -1.68 16 6 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 7 C -0.04 -0.85 1.73 -90.62 -0.16 -1.00 16 8 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 9 C 0.03 0.77 4.32 -27.88 -0.12 0.65 16 10 C -0.51 -14.19 8.25 -34.44 -0.28 -14.47 16 11 H 0.06 1.50 7.39 -52.49 -0.39 1.11 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.12 -2.18 5.42 -90.62 -0.49 -2.67 16 19 C -0.20 -3.11 9.10 -26.69 -0.24 -3.36 16 20 C -0.20 -3.15 9.48 -26.69 -0.25 -3.40 16 21 C 0.04 0.54 3.99 -2.30 -0.01 0.53 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.63 7.58 -51.93 -0.39 0.24 16 27 H 0.08 1.33 7.99 -51.93 -0.42 0.92 16 28 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.61 7.01 -51.93 -0.36 0.24 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.11 2.32 7.21 -51.93 -0.37 1.95 16 33 H 0.10 1.55 4.56 -51.93 -0.24 1.31 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.34 5.25 -51.93 -0.27 1.07 16 37 H 0.04 0.69 6.92 -51.93 -0.36 0.33 16 38 H 0.09 1.26 5.10 -51.93 -0.26 0.99 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -28.76 287.73 -9.03 -37.79 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.36 Total: 1.18 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -1.42 Total: -24.89 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.57 Total: -34.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.76 -9.03 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.389 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds