Wall clock time and date at job start Mon Mar 30 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86799 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47169 * 299.99919 * 3 2 1 6 6 H 1.48497 * 109.47440 * 59.99827 * 3 2 1 7 7 C 1.40130 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.39614 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.33709 * 126.53647 * 0.02562 * 9 7 2 11 11 N 1.28704 * 109.89865 * 180.02562 * 10 9 7 12 12 C 1.32996 * 109.95595 * 0.02562 * 11 10 9 13 13 C 1.40187 * 133.93206 * 179.97438 * 12 11 10 14 14 N 1.31534 * 119.74331 * 180.02562 * 13 12 11 15 15 C 1.33231 * 121.37539 * 359.97438 * 14 13 12 16 16 Cl 1.73598 * 119.45248 * 179.97438 * 15 14 13 17 17 C 1.35880 * 121.08956 * 0.02562 * 15 14 13 18 18 N 1.36073 * 119.59102 * 0.02562 * 17 15 14 19 19 H 0.96996 * 120.00299 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.13158 * 0.03676 * 13 12 11 21 21 H 1.08000 * 120.20264 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7020 1.3465 -0.0006 5 1 1.8832 2.3965 -1.2125 6 1 1.8832 2.3965 1.2124 7 6 2.0087 -1.2135 0.0005 8 1 3.0887 -1.2135 0.0001 9 6 1.3107 -2.4226 0.0005 10 7 -0.0177 -2.5749 -0.0004 11 7 -0.3151 -3.8271 0.0005 12 6 0.7962 -4.5576 0.0026 13 6 1.0545 -5.9354 0.0047 14 7 2.2972 -6.3665 0.0071 15 6 3.3253 -5.5191 0.0070 16 17 4.9454 -6.1426 0.0108 17 6 3.1266 -4.1749 0.0050 18 7 1.8578 -3.6831 0.0035 19 1 -0.4850 0.8400 -0.0004 20 1 0.2362 -6.6404 0.0043 21 1 3.9706 -3.5009 0.0053 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260301842.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:14 Heat of formation + Delta-G solvation = 82.174014 kcal Electronic energy + Delta-G solvation = -12605.573313 eV Core-core repulsion = 10122.267117 eV Total energy + Delta-G solvation = -2483.306196 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.72570 -39.67465 -37.56263 -35.94969 -35.21466 -31.87923 -31.03597 -27.99339 -25.72379 -24.26217 -23.11042 -20.00490 -18.93951 -18.65176 -17.15984 -17.03965 -16.62462 -15.96340 -15.26619 -14.64969 -14.39239 -13.43903 -13.15738 -13.07701 -12.64959 -12.48887 -12.45462 -12.15330 -11.96105 -11.44216 -11.11999 -10.79262 -10.24098 -9.30181 -8.75325 -6.75918 -0.42044 0.32998 0.64987 1.40137 1.40986 1.59270 1.85215 2.08787 2.18930 2.58356 3.09966 3.36328 3.41376 3.83858 4.06019 4.34622 4.66054 4.98020 5.05945 5.33081 5.71246 5.97114 6.39548 6.50374 6.67433 8.14567 8.24657 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.036281 B = 0.009076 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.579115 B = 3084.320413 C = 3846.057913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.028 3.972 3 Si 1.012 2.988 4 H -0.244 1.244 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.446 4.446 8 H 0.113 0.887 9 C 0.302 3.698 10 N -0.344 5.344 11 N -0.279 5.279 12 C 0.015 3.985 13 C 0.236 3.764 14 N -0.483 5.483 15 C 0.057 3.943 16 Cl -0.004 7.004 17 C 0.074 3.926 18 N -0.441 5.441 19 H 0.295 0.705 20 H 0.220 0.780 21 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -3.078 0.012 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.195 4.195 3 Si 0.830 3.170 4 H -0.167 1.167 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.131 0.869 9 C 0.065 3.935 10 N -0.193 5.193 11 N -0.128 5.128 12 C -0.236 4.236 13 C 0.048 3.952 14 N -0.198 5.198 15 C -0.088 4.088 16 Cl 0.024 6.976 17 C -0.053 4.053 18 N -0.130 5.130 19 H 0.106 0.894 20 H 0.236 0.764 21 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.321 -3.399 0.013 8.072 hybrid contribution 1.277 1.094 -0.001 1.682 sum 8.599 -2.305 0.012 8.902 Atomic orbital electron populations 1.70066 1.09398 1.31277 1.28564 1.27082 0.95823 1.04838 0.91758 0.84704 0.79256 0.73943 0.79103 1.16668 1.18817 1.18809 1.18909 0.95663 0.87188 1.46821 0.86943 1.22087 0.89359 0.83970 0.98126 1.75811 1.09131 1.05747 1.28608 1.74540 1.23073 0.99535 1.15678 1.23173 0.85819 0.95285 1.19313 1.22737 0.93998 0.88067 0.90375 1.67567 0.98324 1.37513 1.16355 1.20378 0.89463 0.87575 1.11431 1.98348 1.14348 1.87714 1.97207 1.22249 0.87463 0.95227 1.00402 1.43747 1.06481 1.08241 1.54562 0.89439 0.76363 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -39.92 11.93 21.86 0.26 -39.66 14 2 C 0.03 1.33 5.50 85.31 0.47 1.79 14 3 Si 1.01 34.04 29.56 68.60 2.03 36.07 14 4 H -0.24 -7.55 7.11 99.48 0.71 -6.84 14 5 H -0.26 -8.60 7.11 99.48 0.71 -7.89 14 6 H -0.26 -8.59 7.11 99.48 0.71 -7.89 14 7 C -0.45 -22.08 9.31 23.06 0.21 -21.86 14 8 H 0.11 4.87 7.85 -2.91 -0.02 4.85 14 9 C 0.30 16.24 7.59 133.32 1.01 17.25 14 10 N -0.34 -20.14 10.50 -55.37 -0.58 -20.72 14 11 N -0.28 -15.02 12.31 -55.32 -0.68 -15.70 14 12 C 0.01 0.70 7.93 133.64 1.06 1.76 14 13 C 0.24 8.59 11.32 85.21 0.96 9.56 14 14 N -0.48 -17.32 10.40 -186.36 -1.94 -19.26 14 15 C 0.06 1.99 7.22 83.93 0.61 2.60 14 16 Cl 0.00 -0.12 29.09 -2.72 -0.08 -0.20 14 17 C 0.07 2.83 10.74 83.49 0.90 3.73 14 18 N -0.44 -20.85 3.00 -350.04 -1.05 -21.90 14 19 H 0.29 13.56 8.30 -92.71 -0.77 12.79 14 20 H 0.22 5.98 8.06 -2.91 -0.02 5.96 14 21 H 0.19 6.00 8.06 -2.91 -0.02 5.98 14 Total: -1.00 -64.05 219.96 4.46 -59.58 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.28 Total: 6.95 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 5.22 Total: 14.82 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.99 Total: -117.23 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -64.05 4.46 -59.58 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301842.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.757 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds