Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48534 * 111.00369 * 2 1 4 4 C 1.54932 * 103.22942 * 200.28139 * 3 2 1 5 5 C 1.54601 * 102.92429 * 37.41268 * 4 3 2 6 6 H 1.09003 * 110.39334 * 96.99895 * 5 4 3 7 7 C 1.52996 * 110.30867 * 219.12652 * 5 4 3 8 8 H 1.09003 * 109.46975 * 50.20203 * 7 5 4 9 9 C 1.50700 * 109.46996 * 170.19546 * 7 5 4 10 10 H 1.08009 * 120.00104 * 240.27401 * 9 7 5 11 11 C 1.37881 * 120.00101 * 60.00063 * 9 7 5 12 12 N 1.31520 * 119.99569 * 0.02562 * 11 9 7 13 13 Si 1.86791 * 120.00155 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47265 * 60.00034 * 13 11 9 15 15 H 1.48495 * 109.47309 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47062 * 300.00011 * 13 11 9 17 17 C 1.52993 * 109.47389 * 290.19806 * 7 5 4 18 18 C 1.53782 * 113.61746 * 163.79518 * 17 7 5 19 19 C 1.53784 * 87.08022 * 220.01919 * 18 17 7 20 20 C 1.53777 * 87.08438 * 25.43072 * 19 18 17 21 21 C 1.47907 * 110.99824 * 242.60384 * 2 1 3 22 22 H 1.09002 * 109.46922 * 177.39829 * 1 2 3 23 23 H 1.08999 * 109.46845 * 297.39907 * 1 2 3 24 24 H 1.08996 * 109.46994 * 57.39583 * 1 2 3 25 25 H 1.09000 * 110.66106 * 318.71332 * 3 2 1 26 26 H 1.09001 * 110.66796 * 81.67451 * 3 2 1 27 27 H 1.08995 * 110.72341 * 279.05225 * 4 3 2 28 28 H 1.09001 * 110.72400 * 155.76918 * 4 3 2 29 29 H 0.97000 * 119.99397 * 180.02562 * 12 11 9 30 30 H 1.08999 * 112.84711 * 295.09940 * 17 7 5 31 31 H 1.09001 * 113.60944 * 334.56269 * 18 17 7 32 32 H 1.08994 * 113.61926 * 105.47055 * 18 17 7 33 33 H 1.09007 * 113.61287 * 270.88160 * 19 18 17 34 34 H 1.09000 * 113.61848 * 139.98019 * 19 18 17 35 35 H 1.09004 * 113.61886 * 220.02505 * 20 19 18 36 36 H 1.08999 * 113.69458 * 89.12682 * 20 19 18 37 37 H 1.08992 * 109.91959 * 26.48897 * 21 2 1 38 38 H 1.08999 * 110.08041 * 265.28911 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5861 7 6 4.4896 -0.8531 -1.5383 8 1 4.6438 -1.1827 -0.5108 9 6 4.2131 -2.0487 -2.4131 10 1 4.1894 -3.0390 -1.9825 11 6 3.9848 -1.8779 -3.7621 12 7 4.0088 -0.6716 -4.2855 13 14 3.6427 -3.3599 -4.8464 14 1 2.4244 -4.0572 -4.3619 15 1 3.4330 -2.9111 -6.2463 16 1 4.7995 -4.2897 -4.7933 17 6 5.7451 -0.1354 -2.0376 18 6 7.0538 -0.8515 -1.6644 19 6 7.6439 0.5408 -1.3849 20 6 6.2039 1.0120 -1.1222 21 6 1.9990 -0.6354 -1.2260 22 1 -0.3633 -1.0266 -0.0466 23 1 -0.3633 0.4729 0.9124 24 1 -0.3633 0.5537 -0.8657 25 1 1.4238 2.0204 -0.6730 26 1 2.0014 1.7987 1.0091 27 1 4.1116 0.8836 0.2787 28 1 3.8123 2.1351 -0.9717 29 1 3.8478 -0.5514 -5.2344 30 1 5.6831 0.1435 -3.0895 31 1 6.9709 -1.4771 -0.7756 32 1 7.5248 -1.3652 -2.5024 33 1 8.1025 1.0041 -2.2586 34 1 8.2825 0.5752 -0.5022 35 1 5.9887 2.0027 -1.5227 36 1 5.8875 0.8967 -0.0856 37 1 1.2758 -0.5403 -2.0359 38 1 2.2116 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260313945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = 15.919271 kcal Electronic energy + Delta-G solvation = -16490.508384 eV Core-core repulsion = 14140.085541 eV Total energy + Delta-G solvation = -2350.422844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.80547 -37.18368 -33.49151 -31.39340 -29.03816 -26.84318 -25.36797 -24.19316 -23.92755 -21.34132 -20.26022 -18.89555 -18.11822 -16.03394 -15.27983 -14.95442 -14.51242 -14.23007 -13.56492 -13.44217 -12.72382 -12.53818 -12.13375 -11.64377 -11.42443 -11.13894 -11.04226 -10.89587 -10.87539 -10.67689 -10.54594 -10.44390 -10.22798 -9.82086 -9.46661 -9.30439 -9.03663 -8.78066 -8.41288 -8.15049 -7.73548 -5.93117 -3.99437 3.32528 3.37471 3.41230 4.46509 4.76930 5.31084 5.53688 5.57739 5.64603 5.69486 5.80443 5.82281 5.94467 6.03987 6.13044 6.18923 6.31558 6.35854 6.37073 6.60112 6.68207 6.72204 6.77801 6.82966 6.91512 7.00325 7.13002 7.28682 7.33155 7.43228 7.61528 7.72604 7.85895 7.90247 7.97277 8.23928 8.54228 9.00168 9.65599 11.08497 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.014032 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.127731 B = 1994.983710 C = 3212.554859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.078 4.078 6 H 0.097 0.903 7 C 0.068 3.932 8 H 0.016 0.984 9 C -0.503 4.503 10 H 0.050 0.950 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.279 1.279 17 C -0.079 4.079 18 C -0.128 4.128 19 C -0.149 4.149 20 C -0.147 4.147 21 C 0.056 3.944 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.020 0.980 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.258 0.742 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 3.798 5.005 6.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.097 4.097 6 H 0.115 0.885 7 C 0.049 3.951 8 H 0.035 0.965 9 C -0.541 4.541 10 H 0.069 0.931 11 C -0.132 4.132 12 N -0.526 5.526 13 Si 0.709 3.291 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.098 4.098 18 C -0.166 4.166 19 C -0.186 4.186 20 C -0.184 4.184 21 C -0.071 4.071 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.797 3.590 5.279 6.433 hybrid contribution -0.593 -0.362 -1.469 1.625 sum -1.390 3.227 3.810 5.183 Atomic orbital electron populations 1.22435 0.89724 1.01240 0.99609 1.64813 1.06515 1.14555 1.39459 1.23228 0.96894 0.90115 0.99311 1.22807 0.94219 0.99557 0.99439 1.21984 0.94961 0.94508 0.98289 0.88522 1.18672 0.89898 0.92622 0.93891 0.96515 1.21090 1.47106 0.93081 0.92828 0.93141 1.24861 0.95270 0.95213 0.97848 1.69804 1.50155 1.20328 1.12322 0.86835 0.78803 0.83692 0.79736 1.20451 1.21501 1.20425 1.22552 0.93926 0.92578 1.00740 1.22770 0.98975 0.94732 1.00100 1.22851 0.96772 0.99181 0.99811 1.23177 0.95565 0.99246 1.00442 1.22879 0.96079 1.00365 0.87728 0.91933 0.92444 0.96172 0.94961 0.91712 0.91599 0.92472 0.93181 0.87167 0.91726 0.93099 0.91525 0.93390 0.93292 0.91245 0.95672 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 60.07 0.56 0.87 16 2 N -0.53 -10.07 5.55 -238.71 -1.33 -11.39 16 3 C 0.03 0.57 6.56 -1.90 -0.01 0.56 16 4 C -0.12 -2.32 4.83 -24.87 -0.12 -2.44 16 5 C -0.08 -1.73 2.20 -89.26 -0.20 -1.93 16 6 H 0.10 2.43 6.38 -51.93 -0.33 2.10 16 7 C 0.07 1.60 1.33 -91.78 -0.12 1.48 16 8 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 9 C -0.50 -13.05 7.13 -34.44 -0.25 -13.29 16 10 H 0.05 1.34 7.81 -52.48 -0.41 0.93 16 11 C 0.07 1.80 5.14 -17.82 -0.09 1.70 16 12 N -0.89 -23.50 9.54 55.43 0.53 -22.97 16 13 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.08 -1.76 2.78 -89.81 -0.25 -2.01 16 18 C -0.13 -2.61 7.54 -25.92 -0.20 -2.80 16 19 C -0.15 -2.63 8.08 -25.92 -0.21 -2.84 16 20 C -0.15 -2.77 5.63 -25.92 -0.15 -2.92 16 21 C 0.06 1.22 5.91 -2.75 -0.02 1.21 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 25 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.25 6.01 -51.93 -0.31 0.94 16 28 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.11 2.78 6.25 -51.93 -0.32 2.46 16 31 H 0.06 1.29 8.05 -51.93 -0.42 0.88 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.90 7.80 -51.93 -0.41 0.49 16 36 H 0.07 1.27 6.27 -51.93 -0.33 0.95 16 37 H 0.02 0.56 7.73 -51.93 -0.40 0.16 16 38 H 0.09 2.00 6.83 -51.93 -0.35 1.64 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -25.64 284.20 -9.16 -34.80 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.59 Total: 1.96 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -1.04 Total: -22.42 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.80 Total: -34.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.64 -9.16 -34.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.723 kcal (2) G-P(sol) polarization free energy of solvation -25.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds