Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48534 * 111.00369 * 2 1 4 4 C 1.54932 * 103.22942 * 200.28139 * 3 2 1 5 5 C 1.54601 * 102.92429 * 37.41268 * 4 3 2 6 6 H 1.09003 * 110.39334 * 96.99895 * 5 4 3 7 7 C 1.52996 * 110.30867 * 219.12652 * 5 4 3 8 8 H 1.09003 * 109.46975 * 50.20203 * 7 5 4 9 9 C 1.50700 * 109.46996 * 170.19546 * 7 5 4 10 10 H 1.08009 * 120.00104 * 240.27401 * 9 7 5 11 11 C 1.37881 * 120.00101 * 60.00063 * 9 7 5 12 12 N 1.31520 * 119.99569 * 0.02562 * 11 9 7 13 13 Si 1.86791 * 120.00155 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47265 * 60.00034 * 13 11 9 15 15 H 1.48495 * 109.47309 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47062 * 300.00011 * 13 11 9 17 17 C 1.52993 * 109.47389 * 290.19806 * 7 5 4 18 18 C 1.53782 * 113.61746 * 163.79518 * 17 7 5 19 19 C 1.53784 * 87.08022 * 220.01919 * 18 17 7 20 20 C 1.53777 * 87.08438 * 25.43072 * 19 18 17 21 21 C 1.47907 * 110.99824 * 242.60384 * 2 1 3 22 22 H 1.09002 * 109.46922 * 177.39829 * 1 2 3 23 23 H 1.08999 * 109.46845 * 297.39907 * 1 2 3 24 24 H 1.08996 * 109.46994 * 57.39583 * 1 2 3 25 25 H 1.09000 * 110.66106 * 318.71332 * 3 2 1 26 26 H 1.09001 * 110.66796 * 81.67451 * 3 2 1 27 27 H 1.08995 * 110.72341 * 279.05225 * 4 3 2 28 28 H 1.09001 * 110.72400 * 155.76918 * 4 3 2 29 29 H 0.97000 * 119.99397 * 180.02562 * 12 11 9 30 30 H 1.08999 * 112.84711 * 295.09940 * 17 7 5 31 31 H 1.09001 * 113.60944 * 334.56269 * 18 17 7 32 32 H 1.08994 * 113.61926 * 105.47055 * 18 17 7 33 33 H 1.09007 * 113.61287 * 270.88160 * 19 18 17 34 34 H 1.09000 * 113.61848 * 139.98019 * 19 18 17 35 35 H 1.09004 * 113.61886 * 220.02505 * 20 19 18 36 36 H 1.08999 * 113.69458 * 89.12682 * 20 19 18 37 37 H 1.08992 * 109.91959 * 26.48897 * 21 2 1 38 38 H 1.08999 * 110.08041 * 265.28911 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5861 7 6 4.4896 -0.8531 -1.5383 8 1 4.6438 -1.1827 -0.5108 9 6 4.2131 -2.0487 -2.4131 10 1 4.1894 -3.0390 -1.9825 11 6 3.9848 -1.8779 -3.7621 12 7 4.0088 -0.6716 -4.2855 13 14 3.6427 -3.3599 -4.8464 14 1 2.4244 -4.0572 -4.3619 15 1 3.4330 -2.9111 -6.2463 16 1 4.7995 -4.2897 -4.7933 17 6 5.7451 -0.1354 -2.0376 18 6 7.0538 -0.8515 -1.6644 19 6 7.6439 0.5408 -1.3849 20 6 6.2039 1.0120 -1.1222 21 6 1.9990 -0.6354 -1.2260 22 1 -0.3633 -1.0266 -0.0466 23 1 -0.3633 0.4729 0.9124 24 1 -0.3633 0.5537 -0.8657 25 1 1.4238 2.0204 -0.6730 26 1 2.0014 1.7987 1.0091 27 1 4.1116 0.8836 0.2787 28 1 3.8123 2.1351 -0.9717 29 1 3.8478 -0.5514 -5.2344 30 1 5.6831 0.1435 -3.0895 31 1 6.9709 -1.4771 -0.7756 32 1 7.5248 -1.3652 -2.5024 33 1 8.1025 1.0041 -2.2586 34 1 8.2825 0.5752 -0.5022 35 1 5.9887 2.0027 -1.5227 36 1 5.8875 0.8967 -0.0856 37 1 1.2758 -0.5403 -2.0359 38 1 2.2116 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = 2.111337 kcal Electronic energy + Delta-G solvation = -16491.107141 eV Core-core repulsion = 14140.085541 eV Total energy + Delta-G solvation = -2351.021601 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44958 -38.73851 -35.32466 -33.09984 -30.72259 -28.50931 -26.99177 -25.94949 -25.43155 -23.02328 -21.76987 -20.70100 -19.72904 -17.99556 -16.95496 -16.54369 -16.28532 -15.80660 -15.11396 -14.95982 -14.55021 -14.02854 -13.73133 -13.21423 -12.98856 -12.85803 -12.80975 -12.71503 -12.58450 -12.32313 -12.16422 -11.94240 -11.90181 -11.56955 -11.20015 -10.94137 -10.88928 -10.57819 -10.23457 -9.99122 -9.26314 -7.94464 -6.05434 1.40741 1.43081 1.48234 2.48532 3.27273 3.31742 4.05576 4.10425 4.15152 4.15703 4.26309 4.41119 4.52700 4.57078 4.59400 4.72779 4.82264 4.94932 4.96400 5.04159 5.08194 5.12715 5.20800 5.24442 5.31793 5.37387 5.41757 5.55234 5.58335 5.76695 5.82073 5.97639 6.05171 6.21607 6.29305 6.35874 6.56512 6.98836 7.60483 9.04135 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.014032 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.127731 B = 1994.983710 C = 3212.554859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.036 3.964 4 C -0.114 4.114 5 C -0.076 4.076 6 H 0.065 0.935 7 C 0.069 3.931 8 H 0.007 0.993 9 C -0.517 4.517 10 H 0.035 0.965 11 C 0.035 3.965 12 N -0.899 5.899 13 Si 0.926 3.074 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.090 4.090 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.134 4.134 21 C 0.065 3.935 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.020 0.980 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.255 0.745 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.009 0.991 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 4.855 6.289 7.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.262 5.262 3 C -0.091 4.091 4 C -0.152 4.152 5 C -0.096 4.096 6 H 0.084 0.916 7 C 0.050 3.950 8 H 0.025 0.975 9 C -0.555 4.555 10 H 0.053 0.947 11 C -0.164 4.164 12 N -0.538 5.538 13 Si 0.754 3.246 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.109 4.109 18 C -0.171 4.171 19 C -0.169 4.169 20 C -0.172 4.172 21 C -0.062 4.062 22 H 0.082 0.918 23 H 0.104 0.896 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.723 4.648 6.570 8.080 hybrid contribution -0.649 -0.726 -1.856 2.096 sum -1.372 3.922 4.715 6.284 Atomic orbital electron populations 1.22516 0.87682 1.01830 1.01024 1.64777 1.08551 1.15491 1.37426 1.23279 0.95532 0.89344 1.00965 1.22713 0.95654 0.98517 0.98312 1.21798 0.94628 0.95267 0.97861 0.91625 1.18636 0.91306 0.92356 0.92669 0.97491 1.21279 1.47276 0.93370 0.93567 0.94660 1.25309 0.95442 0.96974 0.98679 1.69934 1.50500 1.21250 1.12122 0.86115 0.78475 0.81519 0.78506 1.20430 1.21265 1.20382 1.22408 0.94073 0.94818 0.99627 1.22785 0.98352 0.96278 0.99648 1.22763 0.96474 0.96407 1.01217 1.23066 0.96014 0.98111 0.99960 1.22622 0.95774 0.99266 0.88549 0.91785 0.89641 0.96117 0.94452 0.88887 0.91272 0.91536 0.93529 0.90374 0.91654 0.94324 0.90824 0.90666 0.92647 0.90302 0.97294 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.40 127.69 1.20 1.74 16 2 N -0.54 -19.65 5.55 -909.16 -5.05 -24.70 16 3 C 0.04 1.18 6.56 86.65 0.57 1.75 16 4 C -0.11 -4.14 4.83 31.80 0.15 -3.99 16 5 C -0.08 -3.40 2.20 -9.91 -0.02 -3.42 16 6 H 0.07 3.37 6.38 -2.39 -0.02 3.35 16 7 C 0.07 3.31 1.33 -11.54 -0.02 3.29 16 8 H 0.01 0.33 7.92 -2.39 -0.02 0.31 16 9 C -0.52 -27.57 7.13 25.60 0.18 -27.38 16 10 H 0.04 1.93 7.81 -2.91 -0.02 1.91 16 11 C 0.04 1.88 5.14 84.65 0.44 2.31 16 12 N -0.90 -48.77 9.54 21.45 0.20 -48.56 16 13 Si 0.93 43.27 29.54 68.60 2.03 45.29 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 C -0.09 -4.02 2.78 -10.27 -0.03 -4.04 16 18 C -0.13 -5.33 7.54 31.12 0.23 -5.09 16 19 C -0.13 -4.32 8.08 31.12 0.25 -4.07 16 20 C -0.13 -4.80 5.63 31.12 0.18 -4.63 16 21 C 0.07 2.88 5.91 86.45 0.51 3.39 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.02 0.61 8.00 -2.39 -0.02 0.59 16 25 H 0.04 1.18 7.96 -2.39 -0.02 1.16 16 26 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 2.47 6.01 -2.39 -0.01 2.45 16 28 H 0.07 2.28 7.53 -2.39 -0.02 2.26 16 29 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.08 4.02 6.25 -2.39 -0.01 4.01 16 31 H 0.06 2.57 8.05 -2.39 -0.02 2.56 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.91 7.80 -2.38 -0.02 1.89 16 36 H 0.08 2.68 6.27 -2.39 -0.01 2.67 16 37 H 0.01 0.40 7.73 -2.39 -0.02 0.38 16 38 H 0.06 2.91 6.83 -2.39 -0.02 2.89 16 Total: -1.00 -55.29 284.20 1.83 -53.46 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.00 Total: 14.66 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 3.65 Total: -40.15 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -4.84 Total: -73.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -55.29 1.83 -53.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.568 kcal (2) G-P(sol) polarization free energy of solvation -55.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds